prot_A-nodosum_M_contig1209.11.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig1209.11.1
Unique Name	prot_A-nodosum_M_contig1209.11.1
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	101

Homology

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BLAST of mRNA_A-nodosum_M_contig1209.11.1 vs. uniprot
Match: D8LE80_ECTSI (60S ribosomal protein L41 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE80_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 3.720e-42
Identity = 85/100 (85.00%), Postives = 92/100 (92.00%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPSTSVSNVKDAVEALEYFPASLMRLNHGGVQLNSGCLADAGIEEADTLTLLFNVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQIFVKTLGGASLPLEVSP+TS++ VK AVEA E+ PA+LMRLNHG  QL+SGCLADAGIEEADTLTLL +V GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 100

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BLAST of mRNA_A-nodosum_M_contig1209.11.1 vs. uniprot
Match: A0A836CFJ6_9STRA (60S ribosomal protein L41 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFJ6_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.480e-24
Identity = 69/101 (68.32%), Postives = 79/101 (78.22%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPSTSVSNVKDAVEALEYFPASLMRLNHGGVQLNSGC-LADAGIEEADTLTLLFNVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQIFVKTL   SL L+V+P+++V +V   VE  E+ PA+L RL+ G  QL S   L  AGIEEADTLTLL +VNGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQIFVKTLARDSLVLDVAPTSTVGDVMAMVEDREFLPAALQRLSCGSTQLASTTTLEAAGIEEADTLTLLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101

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BLAST of mRNA_A-nodosum_M_contig1209.11.1 vs. uniprot
Match: A0A0H5RDB8_9EUKA (60S ribosomal protein L41 (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RDB8_9EUKA)

HSP 1 Score: 90.5 bits (223), Expect = 2.390e-21
Identity = 66/100 (66.00%), Postives = 73/100 (73.00%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPSTSVSNVKDAVEALEYFPASLMRLNHGGVQLNSGCLADAGIEEADTLTLLFNVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQIFV+TL GA L L V+   SV++VK  VE  E+   S  RL   G QL SG LAD G+ EADTL +L  VNGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:   25 MQIFVETLSGAPLKLSVASDASVASVKQMVEDYEFI--SGFRLVCAGKQLESGSLADYGVAEADTLKMLLFVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 122

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BLAST of mRNA_A-nodosum_M_contig1209.11.1 vs. uniprot
Match: V9EKG6_PHYPR (60S ribosomal protein L41 n=3 Tax=Phytophthora TaxID=4783 RepID=V9EKG6_PHYPR)

HSP 1 Score: 89.0 bits (219), Expect = 5.010e-21
Identity = 63/100 (63.00%), Postives = 73/100 (73.00%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPSTSVSNVKDAVEALEYFPASLMRLNHGGVQLNSGCLADAGIEEADTLTLLFNVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQ+FV+TL G+ L L V+   SV++VK AVE +EY      RL   G QL SG LAD  + E DTL +L +VNGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQN--FRLVCAGKQLTSGSLADYAVGECDTLKMLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 98

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BLAST of mRNA_A-nodosum_M_contig1209.11.1 vs. uniprot
Match: D0NRK6_PHYIT (60S ribosomal protein L41 n=7 Tax=Peronosporaceae TaxID=4777 RepID=D0NRK6_PHYIT)

HSP 1 Score: 89.0 bits (219), Expect = 6.420e-21
Identity = 63/100 (63.00%), Postives = 73/100 (73.00%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPSTSVSNVKDAVEALEYFPASLMRLNHGGVQLNSGCLADAGIEEADTLTLLFNVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQ+FV+TL G+ L L V+   SV++VK AVE +EY      RL   G QL SG LAD  + E DTL +L +VNGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:   10 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQN--FRLVCAGKQLTSGSLADYAVGECDTLKMLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 107

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BLAST of mRNA_A-nodosum_M_contig1209.11.1 vs. uniprot
Match: A0A8K1CA19_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA19_PYTOL)

HSP 1 Score: 88.6 bits (218), Expect = 7.110e-21
Identity = 62/100 (62.00%), Postives = 75/100 (75.00%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPSTSVSNVKDAVEALEYFPASLMRLNHGGVQLNSGCLADAGIEEADTLTLLFNVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQ+FV+TL GA L L V+   SV++VK  +E  E+   S  RL   G QL +G LAD G+EEA TL +L+++NGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQLFVETLSGAPLTLSVAADASVASVKQMIENHEFM--SGFRLVCAGKQLETGSLADYGVEEAGTLKMLYSLNGGMRAKWRKKRXXXXXXXXXXXRQRAR 98

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BLAST of mRNA_A-nodosum_M_contig1209.11.1 vs. uniprot
Match: A0A833WDI0_PHYIN (60S ribosomal protein L41 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WDI0_PHYIN)

HSP 1 Score: 89.7 bits (221), Expect = 8.820e-21
Identity = 63/100 (63.00%), Postives = 73/100 (73.00%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPSTSVSNVKDAVEALEYFPASLMRLNHGGVQLNSGCLADAGIEEADTLTLLFNVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQ+FV+TL G+ L L V+   SV++VK AVE +EY      RL   G QL SG LAD  + E DTL +L +VNGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:   48 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQN--FRLVSAGKQLTSGSLADYAVGECDTLKMLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 145

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BLAST of mRNA_A-nodosum_M_contig1209.11.1 vs. uniprot
Match: W2KP00_PHYPR (60S ribosomal protein L41 (Fragment) n=5 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KP00_PHYPR)

HSP 1 Score: 89.0 bits (219), Expect = 2.460e-20
Identity = 63/100 (63.00%), Postives = 73/100 (73.00%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPSTSVSNVKDAVEALEYFPASLMRLNHGGVQLNSGCLADAGIEEADTLTLLFNVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQ+FV+TL G+ L L V+   SV++VK AVE +EY      RL   G QL SG LAD  + E DTL +L +VNGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:   61 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQN--FRLVCAGKQLTSGSLADYAVGECDTLKMLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 158

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BLAST of mRNA_A-nodosum_M_contig1209.11.1 vs. uniprot
Match: A0A6A4FFT9_9STRA (60S ribosomal protein L41 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FFT9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.410e-19
Identity = 64/100 (64.00%), Postives = 74/100 (74.00%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPSTSVSNVKDAVEALEYFPASLMRLNHGGVQLNSGCLADAGIEEADTLTLLFNVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQ+FV+TL G+ L L V+   SV++VK AVE +EY P    RL   G QL SG LAD  + E DTL +L +VNGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:  831 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIPN--FRLVCAGKQLTSGSLADYAVGECDTLKMLLDVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 928

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BLAST of mRNA_A-nodosum_M_contig1209.11.1 vs. uniprot
Match: A0A6G0NVC9_9STRA (60S ribosomal protein L41 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NVC9_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.550e-19
Identity = 64/100 (64.00%), Postives = 74/100 (74.00%), Query Frame = 0

Query:    1 MQIFVKTLGGASLPLEVSPSTSVSNVKDAVEALEYFPASLMRLNHGGVQLNSGCLADAGIEEADTLTLLFNVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
            MQ+FV+TL G+ L L V+   SV++VK AVE +EY P    RL   G QL SG LAD  + E DTL +L +VNGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:  710 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIPN--FRLVCAGKQLTSGSLADYVVGECDTLKMLLDVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 807

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig1209.11.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig1209.11.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LE80_ECTSI	3.720e-42	85.00	60S ribosomal protein L41 n=2 Tax=Ectocarpus TaxID...	[more]
A0A836CFJ6_9STRA	2.480e-24	68.32	60S ribosomal protein L41 n=1 Tax=Tribonema minus ...	[more]
A0A0H5RDB8_9EUKA	2.390e-21	66.00	60S ribosomal protein L41 (Fragment) n=1 Tax=Spong...	[more]
V9EKG6_PHYPR	5.010e-21	63.00	60S ribosomal protein L41 n=3 Tax=Phytophthora Tax...	[more]
D0NRK6_PHYIT	6.420e-21	63.00	60S ribosomal protein L41 n=7 Tax=Peronosporaceae ...	[more]
A0A8K1CA19_PYTOL	7.110e-21	62.00	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A833WDI0_PHYIN	8.820e-21	63.00	60S ribosomal protein L41 n=2 Tax=Phytophthora inf...	[more]
W2KP00_PHYPR	2.460e-20	63.00	60S ribosomal protein L41 (Fragment) n=5 Tax=Phyto...	[more]
A0A6A4FFT9_9STRA	1.410e-19	64.00	60S ribosomal protein L41 n=9 Tax=Phytophthora Tax...	[more]
A0A6G0NVC9_9STRA	3.550e-19	64.00	60S ribosomal protein L41 n=1 Tax=Phytophthora fra...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 1..71 e-value: 1.1E-9 score: 48.1
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 3..71 e-value: 7.1E-12 score: 44.9
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..75 score: 16.058567
IPR007836	Ribosomal protein L41	PFAM	PF05162	Ribosomal_L41	coord: 76..98 e-value: 7.3E-8 score: 32.3
None	No IPR available	GENE3D	3.10.20.90		coord: 1..100 e-value: 1.1E-18 score: 68.8
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..75

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig1209	contig	A-nodosum_M_contig1209:135267..135569 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig1209.11.1	mRNA_A-nodosum_M_contig1209.11.1	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig1209 135240..136339 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig1209.11.1 ID=prot_A-nodosum_M_contig1209.11.1|Name=mRNA_A-nodosum_M_contig1209.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=101bp
MQIFVKTLGGASLPLEVSPSTSVSNVKDAVEALEYFPASLMRLNHGGVQL
NSGCLADAGIEEADTLTLLFNVNGGMRAKWRKKRMRRLRRKRRKMRQRAR
*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin-like_dom
IPR007836	Ribosomal_L41
IPR029071	Ubiquitin-like_domsf