mRNA_A-nodosum_M_contig1201.13.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1201.13.1
Unique NamemRNA_A-nodosum_M_contig1201.13.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1201.13.1 vs. uniprot
Match: A0A8D1A7H5_PIG (40S ribosomal protein S7 n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1A7H5_PIG)

HSP 1 Score: 356 bits (913), Expect = 4.190e-122
Identity = 184/191 (96.34%), Postives = 187/191 (97.91%), Query Frame = 1 
Query:    1 MFTGATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGNKKAIIIFVPYRLLRSYHKIQQRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGVRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCRIDGSKILKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPV 573
            MFTGA KIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGG KKAIIIFVPYRLLRSYHKIQ RLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQG RPRSRTLTAVQDAMLEDLVFPTEIVGKRTRC++DGSKILKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFP+
Sbjct:    1 MFTGAIKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGTRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKVDGSKILKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPL 191
[Close]
BLAST of mRNA_A-nodosum_M_contig1201.13.1 vs. uniprot
Match: D7G463_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G463_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 2.080e-117
Identity = 186/194 (95.88%), Postives = 191/194 (98.45%), Query Frame = 1 
Query:    1 MFTGATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGNKKAIIIFVPYRLLRSYHKIQQRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGVRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCRIDGSKILKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQEP 582
            MFTGATKIVKPEGQEADEFEQ VAQELFNLEMSAADIK++IRDLYITGAKQVDVGG KKAIIIFVPYRLLRSYHKIQ RLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQG+RPRSRTLTAVQDAMLEDLVFPTEIVGKRTRC+IDGSK+LKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQEP
Sbjct:  519 MFTGATKIVKPEGQEADEFEQQVAQELFNLEMSAADIKADIRDLYITGAKQVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGIRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKIDGSKLLKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQEP 712
[Close]
BLAST of mRNA_A-nodosum_M_contig1201.13.1 vs. uniprot
Match: A0A836C8B1_9STRA (40S ribosomal protein S7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8B1_9STRA)

HSP 1 Score: 305 bits (780), Expect = 7.100e-102
Identity = 152/186 (81.72%), Postives = 176/186 (94.62%), Query Frame = 1 
Query:   22 IVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGNKKAIIIFVPYRLLRSYHKIQQRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGVRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCRIDGSKILKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 579
            IVKPEGQ ADEFEQTVAQEL+NL+MSAA+IK++++DLYIT AKQV++ G KKAII+FVPYRLLR++HKIQ RLV ELEKKFSGRHVVIIA RTILGK++AR++KT+G RPRSRTLTAVQDA+LEDLV+PTEIVGKRTRCR+DG+K+LKV LDPKDQVNVETKLDTFS VYKK+TNK+VVFEFPVQE
Sbjct:    6 IVKPEGQAADEFEQTVAQELYNLQMSAAEIKADLKDLYITSAKQVELAGGKKAIILFVPYRLLRAFHKIQARLVPELEKKFSGRHVVIIAQRTILGKNFARNSKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCRVDGTKLLKVHLDPKDQVNVETKLDTFSYVYKKLTNKEVVFEFPVQE 191
[Close]
BLAST of mRNA_A-nodosum_M_contig1201.13.1 vs. uniprot
Match: A0A7S2XZE0_9STRA (40S ribosomal protein S7 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZE0_9STRA)

HSP 1 Score: 305 bits (780), Expect = 1.740e-101
Identity = 153/192 (79.69%), Postives = 176/192 (91.67%), Query Frame = 1 
Query:    4 FTGATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGNKKAIIIFVPYRLLRSYHKIQQRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGVRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCRIDGSKILKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 579
            FTGA KIVKP GQE D+FE++VAQEL+NLEMSAA++K+E+RDLYIT AK+V+VGG KKAIII VPY  LR++HKIQ RLVRELEKKFSGRHVV+IA RTILGKSY RSTKT+G RPRSRTLT VQ+ +LEDLV+PTEIVGKRT+C++DGSKILKV LDPKDQVNVETKLDTFS VYKK+TNKDVVF+FP+QE
Sbjct:   25 FTGAKKIVKPAGQEIDDFEKSVAQELYNLEMSAAELKAELRDLYITAAKEVEVGGGKKAIIIVVPYVKLRAFHKIQLRLVRELEKKFSGRHVVVIAQRTILGKSYTRSTKTKGPRPRSRTLTHVQEQILEDLVYPTEIVGKRTKCKLDGSKILKVLLDPKDQVNVETKLDTFSFVYKKLTNKDVVFQFPIQE 216
[Close]
BLAST of mRNA_A-nodosum_M_contig1201.13.1 vs. uniprot
Match: A0A6T5NXM7_HETAK (40S ribosomal protein S7 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NXM7_HETAK)

HSP 1 Score: 298 bits (762), Expect = 1.010e-98
Identity = 151/193 (78.24%), Postives = 172/193 (89.12%), Query Frame = 1 
Query:    1 MFTGATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGNKKAIIIFVPYRLLRSYHKIQQRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGVRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCRIDGSKILKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 579
            M  G+ KIVKP GQE DEFE  VAQELFNLEMSA +IK+++RDLYIT AK+VDVG  KKAII+ VPY+LLR +++IQ RLVRELEKKFSGRHVVIIA RTILGKSYARSTKT+G+RPRSRTLTAVQD++LEDLV+PTEIVGKRTRC + G K+LKV LDPKDQVNVETKLDTF+ VYKK+TNKDV F+FPVQE
Sbjct:   26 MSLGSKKIVKPPGQEPDEFEAQVAQELFNLEMSAVEIKADLRDLYITAAKEVDVGPGKKAIIVVVPYKLLRKFNRIQIRLVRELEKKFSGRHVVIIAQRTILGKSYARSTKTKGLRPRSRTLTAVQDSILEDLVYPTEIVGKRTRCAVSGEKLLKVYLDPKDQVNVETKLDTFAYVYKKLTNKDVSFQFPVQE 218
[Close]
BLAST of mRNA_A-nodosum_M_contig1201.13.1 vs. uniprot
Match: A0A2D4C6D5_PYTIN (40S ribosomal protein S7 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6D5_PYTIN)

HSP 1 Score: 292 bits (748), Expect = 5.730e-97
Identity = 146/193 (75.65%), Postives = 170/193 (88.08%), Query Frame = 1 
Query:    1 MFTGATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGNKKAIIIFVPYRLLRSYHKIQQRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGVRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCRIDGSKILKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 579
            MFTGA KI KPEGQ ADEFEQ VAQELFNLE SAA++K+E++DLYIT AKQVDV   +KAI+IFVPYRL ++++KIQ RL RELEKKFSGRHVV I  RTILGK +AR+ K  G RPRSRTLTAVQ+A+L+D+V+PTEIVGKRTR R+DGSK+LKV LDPKDQVNVETKLDTF++VYKK+TNKDVVFEFPV +
Sbjct:    1 MFTGAAKIKKPEGQTADEFEQQVAQELFNLEASAAELKNELKDLYITAAKQVDVASGRKAIVIFVPYRLHKAFNKIQARLTRELEKKFSGRHVVFITQRTILGKGFARANKATGPRPRSRTLTAVQEAILDDIVYPTEIVGKRTRVRLDGSKLLKVYLDPKDQVNVETKLDTFATVYKKLTNKDVVFEFPVHQ 193
[Close]
BLAST of mRNA_A-nodosum_M_contig1201.13.1 vs. uniprot
Match: A0A662XBL9_9STRA (40S ribosomal protein S7 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBL9_9STRA)

HSP 1 Score: 292 bits (748), Expect = 5.730e-97
Identity = 146/193 (75.65%), Postives = 172/193 (89.12%), Query Frame = 1 
Query:    1 MFTGATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGNKKAIIIFVPYRLLRSYHKIQQRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGVRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCRIDGSKILKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 579
            MFTG +KIVKPEGQ  DEFEQ VAQEL+NLE+SAA+IK++++DLYIT AKQVD+   +KAI+IFVP+RL  S+ KIQ RLVRELEKKFSGRHV+IIA RTILGK +AR+ KT G RPRSRTLTAVQ+A+L+DLV+PTEIVGKRTR R+D SK+LKV LDPKDQVNVETKLDTF++VYKK+TNKDVVFEFPV +
Sbjct:    1 MFTGRSKIVKPEGQTPDEFEQQVAQELYNLELSAAEIKNDLKDLYITAAKQVDISSGRKAIVIFVPFRLHASFKKIQARLVRELEKKFSGRHVIIIAQRTILGKGFARANKTSGPRPRSRTLTAVQEAILDDLVYPTEIVGKRTRVRLDSSKLLKVFLDPKDQVNVETKLDTFATVYKKLTNKDVVFEFPVHQ 193
[Close]
BLAST of mRNA_A-nodosum_M_contig1201.13.1 vs. uniprot
Match: H3G9W8_PHYRM (40S ribosomal protein S7 n=21 Tax=Peronosporaceae TaxID=4777 RepID=H3G9W8_PHYRM)

HSP 1 Score: 287 bits (735), Expect = 4.710e-95
Identity = 146/189 (77.25%), Postives = 167/189 (88.36%), Query Frame = 1 
Query:   13 ATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGNKKAIIIFVPYRLLRSYHKIQQRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGVRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCRIDGSKILKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 579
            A+KIVKPEGQ ADEFE  VAQELFNLE SAA+IK++++DLYIT AKQVD+   +KAI+IFVP+RL  S+ KIQ RLVRELEKKFSGRHVVIIA RTILGK Y+R+    G RPRSRTLT VQ+ +L+DLVFPTEIVGKRTRCR+DGSK+LKV LDPKDQVNVETKLDTF++VYKK+TNKDVVFEFPVQE
Sbjct:    2 ASKIVKPEGQTADEFELQVAQELFNLEQSAAEIKTDLKDLYITAAKQVDISSGRKAIVIFVPFRLHASFKKIQARLVRELEKKFSGRHVVIIAQRTILGKGYSRANHGAGPRPRSRTLTHVQEQILDDLVFPTEIVGKRTRCRLDGSKLLKVHLDPKDQVNVETKLDTFATVYKKLTNKDVVFEFPVQE 190
[Close]
BLAST of mRNA_A-nodosum_M_contig1201.13.1 vs. uniprot
Match: A0A7S2C777_9STRA (40S ribosomal protein S7 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C777_9STRA)

HSP 1 Score: 286 bits (731), Expect = 2.510e-94
Identity = 147/196 (75.00%), Postives = 171/196 (87.24%), Query Frame = 1 
Query:    1 MFTGATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVG---GNKKAIIIFVPYRLLRSYHKIQQRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGVRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCRIDGSKILKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 579
            MFTG  KIVKPEGQE+ EFE TVAQELFNLEMSAA+IKSE+RDLYIT AK+V+VG     K+AIIIFVP++LL+ +HKIQ RLVRELEKKFSG+HV I+A RTILGKSY+RSTKT+G RPRSRTLTAVQDA+LEDLVFPTEIVGKRTRC++DG+K L V LD KD VNVETKL+TF+ VYK +TNK+V F FP ++
Sbjct:    1 MFTGFKKIVKPEGQESTEFENTVAQELFNLEMSAAEIKSELRDLYITAAKEVNVGPASAGKQAIIIFVPFKLLKQFHKIQARLVRELEKKFSGKHVTIVAQRTILGKSYSRSTKTKGPRPRSRTLTAVQDAILEDLVFPTEIVGKRTRCKLDGTKQLNVFLDAKDIVNVETKLETFADVYKHLTNKEVEFAFPTEQ 196
[Close]
BLAST of mRNA_A-nodosum_M_contig1201.13.1 vs. uniprot
Match: K3XAM7_GLOUD (40S ribosomal protein S7 n=3 Tax=Pythiaceae TaxID=4782 RepID=K3XAM7_GLOUD)

HSP 1 Score: 284 bits (726), Expect = 1.140e-93
Identity = 145/189 (76.72%), Postives = 167/189 (88.36%), Query Frame = 1 
Query:   13 ATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGNKKAIIIFVPYRLLRSYHKIQQRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGVRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCRIDGSKILKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 579
            + KIVKPEGQ ADEFE  VAQEL NL+ SAA+IK++++DLYIT AKQVDV   +KAI+IFVPYRL  ++ KIQ RLVRELEKKFSGRHVVIIA RTILGK Y+RS KT G RPRSRTL AVQ+A+L+DLV+PTEIVGKRTR R+DGSK+LKV LDPKDQVNVETKLDTF++VYKK+TNKDVVFEFPVQ+
Sbjct:    2 SAKIVKPEGQTADEFELQVAQELANLQQSAAEIKNDLKDLYITAAKQVDVASGRKAIVIFVPYRLHSAFKKIQARLVRELEKKFSGRHVVIIAQRTILGKGYSRSNKTNGPRPRSRTLVAVQEAILDDLVYPTEIVGKRTRVRLDGSKLLKVFLDPKDQVNVETKLDTFATVYKKLTNKDVVFEFPVQQ 190
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1201.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8D1A7H5_PIG4.190e-12296.3440S ribosomal protein S7 n=1 Tax=Sus scrofa TaxID=... [more]
D7G463_ECTSI2.080e-11795.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C8B1_9STRA7.100e-10281.7240S ribosomal protein S7 n=1 Tax=Tribonema minus T... [more]
A0A7S2XZE0_9STRA1.740e-10179.6940S ribosomal protein S7 n=1 Tax=Fibrocapsa japoni... [more]
A0A6T5NXM7_HETAK1.010e-9878.2440S ribosomal protein S7 n=1 Tax=Heterosigma akash... [more]
A0A2D4C6D5_PYTIN5.730e-9775.6540S ribosomal protein S7 n=1 Tax=Pythium insidiosu... [more]
A0A662XBL9_9STRA5.730e-9775.6540S ribosomal protein S7 n=2 Tax=Nothophytophthora... [more]
H3G9W8_PHYRM4.710e-9577.2540S ribosomal protein S7 n=21 Tax=Peronosporaceae ... [more]
A0A7S2C777_9STRA2.510e-9475.0040S ribosomal protein S7 n=1 Tax=Dictyocha speculu... [more]
K3XAM7_GLOUD1.140e-9376.7240S ribosomal protein S7 n=3 Tax=Pythiaceae TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1201contigA-nodosum_M_contig1201:61941..68489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G463
Preferred nameRPS7
PFAMsRibosomal_S7e
Model size884
Max annot lvl2759|Eukaryota
KEGG koko:K02993,ko:K11592
KEGG Pathwayko03010,ko05206,map03010,map05206
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0002181,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0014020,GO:0015031,GO:0015833,GO:0015935,GO:0016070,GO:0016071,GO:0016072,GO:0016331,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0021915,GO:0022613,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030097,GO:0030154,GO:0030162,GO:0030234,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031647,GO:0031974,GO:0031981,GO:0032040,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035148,GO:0035239,GO:0035295,GO:0042176,GO:0042177,GO:0042254,GO:0042274,GO:0042886,GO:0042981,GO:0043009,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045861,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0051726,GO:0055105,GO:0055106,GO:0060255,GO:0060429,GO:0060562,GO:0060606,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072175,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1902253,GO:1902255,GO:1902531,GO:1902533,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1904666,GO:1904667,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Exons6
Evalue6.98e-120
EggNOG OGsKOG3320@1|root,KOG3320@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_001435.1
Descriptionstructural constituent of ribosome
Cds size585
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1201.13.1prot_A-nodosum_M_contig1201.13.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1201 61941..68190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866627.636318-CDS-A-nodosum_M_contig1201:61940..620331680866627.636318-CDS-A-nodosum_M_contig1201:61940..62033Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1201 61941..62033 +
1680866627.649112-CDS-A-nodosum_M_contig1201:65761..658211680866627.649112-CDS-A-nodosum_M_contig1201:65761..65821Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1201 65762..65821 +
1680866627.6615708-CDS-A-nodosum_M_contig1201:66476..665891680866627.6615708-CDS-A-nodosum_M_contig1201:66476..66589Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1201 66477..66589 +
1680866627.673337-CDS-A-nodosum_M_contig1201:67360..674871680866627.673337-CDS-A-nodosum_M_contig1201:67360..67487Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1201 67361..67487 +
1680866627.6828365-CDS-A-nodosum_M_contig1201:67806..679021680866627.6828365-CDS-A-nodosum_M_contig1201:67806..67902Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1201 67807..67902 +
1680866627.6917408-CDS-A-nodosum_M_contig1201:68094..681901680866627.6917408-CDS-A-nodosum_M_contig1201:68094..68190Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1201 68095..68190 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866627.7728078-UTR-A-nodosum_M_contig1201:68190..684891680866627.7728078-UTR-A-nodosum_M_contig1201:68190..68489Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1201 68191..68489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1201.13.1

>prot_A-nodosum_M_contig1201.13.1 ID=prot_A-nodosum_M_contig1201.13.1|Name=mRNA_A-nodosum_M_contig1201.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=195bp
MFTGATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAK
QVDVGGNKKAIIIFVPYRLLRSYHKIQQRLVRELEKKFSGRHVVIIATRT
ILGKSYARSTKTQGVRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCRIDG
SKILKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQEP*
back to top

mRNA from alignment at A-nodosum_M_contig1201:61941..68489+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1201.13.1 ID=mRNA_A-nodosum_M_contig1201.13.1|Name=mRNA_A-nodosum_M_contig1201.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6549bp|location=Sequence derived from alignment at A-nodosum_M_contig1201:61941..68489+ (Ascophyllum nodosum dioecious)
ATGTTCACGGGAGCGACGAAGATCGTCAAGCCCGAGGGCCAGGAGGCCGA
TGAATTCGAGCAAACAGTGGCCCAGGAGCTTTTCAACCTTGAGGTGCGTG
CCCGACATATAATGACGGTGACAACAGGTGGTGGTTACTCCGCAATTGGA
CGTACATTCGCGTAGCCGTAAGCCAATGCATCAACGTGGTGGGGTGATGG
CAGCCCGTGGATCGATTGTCGAGTTTAGAGCTTCAATTTCCACCCACACA
TTTTAAAAGCTTGGACACCTACAGTACAGTTTGTACAGAGTACTGCTATA
CACTTATTTCCTTATACAACAGTACTGTTTGTACAAGTTGGCTGTCCACA
GCAGCAGGACACGAGGTTCCAGCCTTTTGTGTAGTCTTTATTTTTTTTTG
TGACAACGTTAATCAGCACCGCAGGTTTGAGGTGAAAATCATATGTTCGC
ACGGACTACCCCTTATAACTTGTCTACAAATCAGTTGTTTCCGTCCGTCT
ACCTTGTGTTTAGTCTGACTACTGTACGAGTGTAGTTTGTATATTCCCTA
TACAGCGGCCGAGTCTTTATTTTTTCTCCTCCAATTTTGGCACGAACTAC
CCCTTTTAACTTGTGTCTATTAATAGTCTAAATCAGCGGTTTCCGTCTGT
CTACCCGGTGTTCAGTCTAACATAACTACTGTGTGTGTGTGTGTGTTTTC
TTCCCATCCATTCTGGACATCAATGGACGTACCAGCCGGGGTCACACAGG
AGGAAGGTCACACAGGATTTTTTTAATCCACCTTCCTTCTGCGGTGCGTG
CCTTGATTTTTGTCGCGAGAAGGATTCAGCCATTCCTTTCCCTCGTCGAC
CGTGAAGTCGAATTTTGTGTACTAACGAATTAATCGCTCTCCACCCGTTG
GGCATTTTTTTTTTTTTATTTTTTTATTTTTTTTAGTGAGAAAAATCCCG
TTTGCCGGGATCGAACTCACGTCCCAACGTGTCAGAAGGTTACGAGGTGC
CAACTGAGCTACCGGGGTCGACCGGCCGTTCTGTACGAGTGTAATTTGTA
TATTACCTGCACAGCAGCCGGTACTTTCAACATGCCTACGTCATACCAAT
AGTGGGTTTGGGAAGAGAGCCGCATATTAATTGGTCCATGGTGACCTGCC
GAAGCAGCAACCGTTTGGAACTACCTTGAGGCTTACTGGCCCTGTGCCGG
CGAGTCTCGGCAGTGAACGCCATCGGTACGCAATTGCCCGACCCGATAAA
CTCGAGATTGACCCGAAGGCGTATGGTGGTTTAAATACATAAACGGACGC
CGCTGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACAAGATTCGGTCAG
AGTATGGAGTATGAGCAGGCTGGCGCAGAACGGGACGGCCGAACCCGTCT
CGCGAGACCAACTTCTCAGGCACGAACGGGGACAGAGCTTACACGAGCAG
AATTGGCAACCTTACCCGGTTGATCCTTGCCCTTGCTATTTGTGATGACT
ATACTTGAAGCACTTGTACTTTTAGCTTTACTTTAGACTAATAGTACTGT
GTACTTTAAACTTTTAATACTGGTAGATATGTATTACATTAGTATTAATC
GGACTACAGTAGGATTACTAGTATTTTTCACTCATTGTTTCTGCACCTTT
GAGGAATCGAGAGCACCTAACGCACCTTTTACAACTATGAAAAAGTTTAT
ATAGAGCTATCATAGATAGTAAGCATGCCATGAGTAGGATTGCATGGAGC
CCGATTTAGACCCCGTCGAAACGGATTTTATAGTTTCCAAGTTGTTTTTG
AAATGCTCCAAAGTTTGGGGGAAAGGTAACTTATCGTACCCTAGTTTGTA
GTCGTTTTCCAACATATTTGCACCTTGAAGATTAAAAACGGCTGTTTCAG
GAACAGTTTACGCCGCCACGATGAGCTACAGAAGCTGTTTTAGACTCTTC
TACATACAAGCTCTTGTCCGACGGTCTACTCCCGTCCAACATGGGCTCCA
CCATTTTTCAGCCCGCGACATGGACTGACTGTTGTGGCTGGGATGTGTCG
ATCCACTTATGGAGGACTGCCCCAAGAAGTTGAGGAAATGGAACTTTCGT
GGTTGTGCCACTCGACCTCCAGCTACGCTTCTGCGGATACATAGACTGTG
ACTTGGTATTGAGGTTGCCTTGATGCCAAATTTCCATCGCGATGGACACA
GGCAAAAAGAAAGACAACAAGCGAGTTTTGGTCAGCAATATAACGTGTGG
CCACCGTTGTAGTGATCCGCTTCAGGTTGTACAGAAATCAGAGAGGATGT
ACAAACCTTACCCGAGGAGCCTTATTTTGAAGACTTTTTCGGCAGTGTTG
ATAAACATTCTAAAACATTGGAAGTGGACAAAACGGAAAATTTTGGGAAA
TTCCGTCCCAGAGTTTGTAAATTTTGGCGGTTATCTTCTAGATAAAGACA
TTTCTCGCCTACAGATATTCCCATTCACCAATGGCCTCTAAAGTCAACGT
ATTTCGTGGCTTTGTACGGCGATACCTCTTAATCCCCCTCCTAAATACTA
ACACTGTACATCTACTAGGCTATAGGTAGTATTTTTCtAGTCCACGTAGC
CTTGGAGTCCTCAAAAAAGACTATTTTATTTTATACTCAGCATTACGCGA
TTTTATCACGCATATCCATCACGTCTGAATTTCTCCTGAATATTGGCGCA
TGTGGAATATAGGCCACTGACCGTCCCGATCGAGGCAATCATCTCTTGAA
AACGCTTTGCTCGTTGGAGAGAGATAGATTACATCTAGATGTAGTCATTT
AGTGTTGCTTTATGCAAGATTTGTTGAACTCTCCCAAACCAAATTTTGAG
TTTTCCCATGTACCAAAACCCTTTTTTTTTCACTATTACACCATACACTG
AAAAATATTAGACTATAAGTTGGGGAAAAACAATTCTTTAAAAAAAACAG
TACATCACGACTACAGCAGCAGTGCTACTATTTATAATGATAATTTCAGT
AGTATTACTTGGTACTTGCTGTACTACTGTGGTGATGTTAATTATGGTCT
ACCACGGAAAATCCCGAATTTATGCTCTACTATCAATAGTACAGTGTAAT
ACTTTTTATCAAAAGTGACATATATGATGATACTGTATCTAGACTACAGA
CTAAGTCGGGGGTGGAAAAAATAGTTCCTTAGGACCCAGCGCGTGTCGTC
TACAACTGAGTTTAAAAAATTCATTACAGCCAAACCTGTCTGAATCAGGC
GCGAACGGGGCAAGGAAAAATTTCCCTGTTCAGCTGACCAGGATTAGACC
TTTTGAGCACTCCCGCCTGTTCCCCAGCTATGGTTCGGTGGGTGTGTAAC
TCACGCGACTCCTTGCTCTGTGCCAGGTCTGGGAAAAATCTGAACGCAAT
TGTCTTACAAGGAAAAATCAAAACGTTCTAGGTGGGATCACGTAAAAATA
TTAATAGAACTGCAAATACAAAAGCTCTTCATGGCATTTAAACGGGTTCC
CCTGTAAGACCTCCACGGATGCGGGTCCATTTTACTGCCCAGTGACAATC
ACCAACACATCATTACCATCACCATCACGAGGTGTGGCAATCACAACCGA
GGGTGTAGGTGTGGAAAACATTCATTCCTCTTGACTCTGAAGGTTGGACA
AAATAATACCTGACGAACTTCATTCACTAAATTCTATACTAATATACTGT
GAGTAATGCCAAGGGCGAAACAACACGCCTACTGTAGGGCATCAGCAAGT
TTTTGTAATATCATAGTAAGTACGGTACTAATATCATATTTGTCTTTTTG
TCCTCATTGGCGATGATCAAGATGTCTGCCGCGGACATTAAGTCGGAAAT
CCGCGACCTGTACATCACCGGGGCGAAGCAGGTGCGCGAGCGTAGTGTGC
CTTGGTAGCTTTTTCTCTCCGGCCGGGTTGCGAACGGGTTTTTGCAAGTC
GTTTCCATGAAATCCCATCCAACTATTGATATTATTTTGTATATACCTGG
TACTGTATTATAGTGTAGTGTACTGTATCAGCCACTAACAATAACTGCGC
AGCTCCATGACCACCTTTTAACGAGGTTTCTGGCTGAAATCGGTTCACAG
CAAGTAACCTTATGAAGTATACAGTATCACGTGCGCTGTACTTGGAAGTA
GATCATTTTTAGCCAAATACCACCAAACAGGGTTGCCAACGATGAGTCCC
TTGCCTTTCTTATCCATAGATAGAGAGAATTTAAGTACCCCTGTCCTCTC
CTCTACCTTGTGTCGGGAATCCTCACTCACAAATTTCTAATCGTTTTAGC
ACGTAGTGTTGGCCTGTCGACTGCGTAGGTAAAATGGTTTTGCATGTAAC
ACTTACGTCAGTTTTCACCACATTTGCACATCCCTTGCGTTTTCATCACC
ATGAACATGACTAAACTAAACCGTTGTTGACGTAATAGTAGGTATGACGA
ATTATAAAAGTGGTGATGTAATGATGTGGCAAACGACGTACTAATATTAA
TAGGTGTGACTATGACGTGACATGTTATGATGGCAGGTGGATGTCGGTGG
GAACAAGAAGGCTATCATCATCTTTGTACCCTACCGCCTACTGAGGTCTT
ACCACAAGATCCAGCAGCGTTTGGTGCGAGAGTTGGAAAAGAAGTTCAGG
TGGGAAAAAGTGTGGTCCTTTGTGTTGTGTACTCGATCCTCGATGATTAC
GGTGTTGTAGTGCACGCTGGTTGTGATGTCCCCTGTGATCTTACCGCTGC
GTTTTGCAGGTCTTTAAAGCACGACTGGTAGTTGTTTGGTGTTGCCGGGT
GTGGTATTGACCAGTCACTCTTCACGTGCCGTTGTAGCGTGTCCGTCACT
GTCATGGTCACGGTAATGGTATTAATAAGAGTTTCCGGGAGAGATAGAGA
AAGAGAGAGAGAGCGAATGCCCCCCTCTCTCTCTCCCCCTGTGTAATGGA
AATGATCAAATCAAATCATCCAATCGAAGTGAAGTTTTTGACAGGTTTAC
TTTGGATATTAGTACAGGCTTTTTGGGGGGGGGAATGAGGGTACGGTATA
AGGCAAATCCCATCCCATCCGAACTTCCTTCTCCTCTCGGGCATTCCAAT
ATACTATACTATACTAAACTGTACTGTACTGTACTGTACCAGGTACTCTC
CTAGTGCCGGTTCGCTTGGGCGTAGAGCGCTATTGTCCAATTCATGTTAA
AGTTGCTGGTTTCTCGTCGGGTTGGTGAGAATTACACGCATTTGCGAAGC
ACCTTTCTAAAAAAGGCACACGAGGGAAGAATTAACGTTTTAATCGAAAG
GTTACGAACGCCGGTCTTGACGTTTCTACCAAGTGACGCTTGTTCTCAAG
TCTCTGGCGAAATATCATTTAATATACTTCAGTCGAATTAAAACTCGCCT
TCTTTTGCAAACCTATCCAGTGGACGCCACGTGGTGATCATTGCTACCCG
AACGATCCTCGGCAAGAGCTATGCTCGCTCAACCAAGACCCAAGGAGTCC
GCCCACGTTCGCGCACCCTCACCGCTGTCCAAGACGCCATGCTCGAGGTG
AAGAAAGATTGCGATTGCGTCGACTCCACGTGGAGAGATTTCTCTCGGTG
CATTGTTTTTCAATTGGATTGGCTGGTTCACTTGTGCCCTGTCATATCGT
GTTATTAATACGATGATGCAGCTGACGATGGAGCACGTCGTGCAACAGTC
GAGGCATGTTTGGATCGGTTATCCGAGGCACGGTCCTTCTCTCTCCCCAC
CGACGTTAGATTGTTGATATTAATAGGAGGATTCTAAAATCCACCAGAGC
TCTATTGATTGTAAGTAAAGTGTTATATTGCTGCCTATTCACTCGCGTTT
TGCTGCTTCCTTGCAGGATCTCGTTTTCCCCACGGAGATAGTTGGCAAGC
GCACGAGGTGCCGGATCGATGGCTCCAAGATCCTCAAGGTCCAGCTTGAC
CCCAAGGACCAGGTGCGTGTTTTTCAGGAAAGTCGCGATACATGATTGGC
TGTAAGTACGTGTGTGCCCAAGGATAAAAAAATCGTTTCAACATGCCCCG
CTGAAAGCTCGCCCCTCCAAAGTGCGGGAAGTTCACTTTTTCCCGGAATG
TGGATTTAAAAATATGTCATTGGACGTGGATGCGACTTGTTTTCTTTTTT
TCAGGTGAACGTGGAAACGAAGCTCGACACCTTCTCATCTGTGTACAAGA
AGATCACCAACAAGGACGTTGTTTTCGAGTTCCCTGTGCAGGAGCCGTAG
GTCTGAATGTTTAATGATCCTCGAGCTATGAACATTTAATGATCAGCCAG
CGCGGCGCTCCGGCGCGCGTATAATCAATCTCATTAGCACATTTGGAAGC
GTCAGCACAAACCGCGCGGAAGCTGTCAGCTTGTACAGGCGCGCCCAGCG
ACGGTGCTTCTTGAAAAATGAAACCGCCAAACGAAGGACGAACAAATAAT
GAGCACTACCTCGCCTCCACCTGTCGGTCACGCGTTAGATACAGATTCAA
ACGATTTAAGAGGGCACAGTACACCTCCATCGCGAGTAAACAATACAAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1201:61941..68489+

>mRNA_A-nodosum_M_contig1201.13.1 ID=mRNA_A-nodosum_M_contig1201.13.1|Name=mRNA_A-nodosum_M_contig1201.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=585bp|location=Sequence derived from alignment at A-nodosum_M_contig1201:61941..68489+ (Ascophyllum nodosum dioecious)
ATGTTCACGGGAGCGACGAAGATCGTCAAGCCCGAGGGCCAGGAGGCCGA
TGAATTCGAGCAAACAGTGGCCCAGGAGCTTTTCAACCTTGAGATGTCTG
CCGCGGACATTAAGTCGGAAATCCGCGACCTGTACATCACCGGGGCGAAG
CAGGTGGATGTCGGTGGGAACAAGAAGGCTATCATCATCTTTGTACCCTA
CCGCCTACTGAGGTCTTACCACAAGATCCAGCAGCGTTTGGTGCGAGAGT
TGGAAAAGAAGTTCAGTGGACGCCACGTGGTGATCATTGCTACCCGAACG
ATCCTCGGCAAGAGCTATGCTCGCTCAACCAAGACCCAAGGAGTCCGCCC
ACGTTCGCGCACCCTCACCGCTGTCCAAGACGCCATGCTCGAGGATCTCG
TTTTCCCCACGGAGATAGTTGGCAAGCGCACGAGGTGCCGGATCGATGGC
TCCAAGATCCTCAAGGTCCAGCTTGACCCCAAGGACCAGGTGAACGTGGA
AACGAAGCTCGACACCTTCTCATCTGTGTACAAGAAGATCACCAACAAGG
ACGTTGTTTTCGAGTTCCCTGTGCAGGAGCCGTAG
back to top