mRNA_A-nodosum_M_contig12.29.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig12.29.1 vs. uniprot
Match: D8LC94_ECTSI (SET domain and mariner transposase fusion n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC94_ECTSI) HSP 1 Score: 263 bits (673), Expect = 1.100e-77 Identity = 152/281 (54.09%), Postives = 182/281 (64.77%), Query Frame = 1
Query: 1 LLSFLRWSDCVSLASASSRTFFPHVKRWVEHLSRDMSRGISPEPIPCQSL------LPRSCSAGLRLESIRIPADLSIGGPVPPSFRYLNEAICPSGRAPDRG-DLLAGCSCKVVCGGDKDEERPTCPCARLNASVQSGYAPLFECHAACSCDLKCPLRATQPGGGRSIPRM-KLGFISQKGWGAFSVDAIPRGTFVAEYTGEALTLEEARKRVCAYDRDGLNYVLITQEFFQGGKQVWRTVVDATTSGNVSRFFNHSCEPTLSVFA--IRR---GSMTPR 804
LLSFL W D V+ A S+ F VK ++ D+S G SP PIPC S + ++ G S S+GGPVPPSF YLNEAI D G D L GC+C CG D CPC +LN +VQSG APLFECH +C+C + C LRATQ G +P M +L ++ +KGWGA+SV AI GT+VA+YTGE L + EAR+RV AYDRDGLNYVL TQEFFQGGKQV++T+VDATT GNVSRFFNHSCEPTLSVF +RR G+ PR
Sbjct: 18 LLSFLGWEDAVAFAITST-LLFVQVKAIIQKQCDDISCGSSPYPIPCDSAHRPLHGVQQATPGGSSHSSQSFK--WSLGGPVPPSFMYLNEAIHAFD---DSGADELEGCACFGGCGVDDT----LCPCVQLNVAVQSGPAPLFECHTSCTCGIACRLRATQRGAASKVPPMLRLRYMGKKGWGAYSVGAIAGGTYVADYTGEVLPVPEARRRVHAYDRDGLNYVLTTQEFFQGGKQVFQTIVDATTCGNVSRFFNHSCEPTLSVFVAVVRRLHVGAFDPR 288
BLAST of mRNA_A-nodosum_M_contig12.29.1 vs. uniprot
Match: L8GPN6_ACACA (SET domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPN6_ACACA) HSP 1 Score: 147 bits (371), Expect = 4.240e-38 Identity = 87/240 (36.25%), Postives = 117/240 (48.75%), Query Frame = 1
Query: 403 PLFECHAACSCDLKCPLRATQPGGGRSIPRMKLGFISQKGWGAFSVDAIPRGTFVAEYTGEALTLEEARKRVC-AYDRDGLNYVLITQEFFQGGKQVWRTVVDATTSGNVSRFFNHSCEPTLSVFAIRRGSMTPRLAFFTLEDVVAGSELTYDYEAAGSAGGNSNCGERFSQPALKVPRRMAPLESTLERPYKRSSINESVPVCLAKGGGSSSPGGFRDADETLRRRCLCGSQRCRGLLP 1119
PLFECH+ C C C R Q G ++P +++ + KGW + + +G FV+EY GE ++ EEA++R YDR GLNY+L+ +EF RT +D T GNVSRFFNHSC+P + +F +R GS+ PRLAFF DV AG ELTYDY G GS+ + AD R+C CG++ CRG+LP
Sbjct: 65 PLFECHSRCGCSADCASRVVQKG--ITLP-LEVFMSATKGWSVRVLSPVRKGQFVSEYAGEVVSTEEAQRRWRDEYDRAGLNYLLVVREFIPARGATLRTNIDGTRLGNVSRFFNHSCDPNMLLFLVRVGSLIPRLAFFVCRDVAAGEELTYDY-----------------------------------------------------GHGST-----QAADAPATRQCHCGARHCRGVLP 243
BLAST of mRNA_A-nodosum_M_contig12.29.1 vs. uniprot
Match: A0A7K9Y7P1_9GALL (SETMR methyltransferase (Fragment) n=1 Tax=Odontophorus gujanensis TaxID=886794 RepID=A0A7K9Y7P1_9GALL) HSP 1 Score: 145 bits (366), Expect = 1.880e-37 Identity = 98/272 (36.03%), Postives = 122/272 (44.85%), Query Frame = 1
Query: 304 GCSCKVVCGGDKDEERPTCPCARLNASVQSGYAPLFECHAACSCDLKCPLRATQPGGGRSIPRMKLGFISQKGWGAFSVDAIPRGTFVAEYTGEALTLEEARKRVCAYDRDGLNYVLITQEFFQGGKQVWRTVVDATTSGNVSRFFNHSCEPTLSVFAIRRGSMTPRLAFFTLEDVVAGSELTYDYEAAGSAGGNSNCGERFSQPALKVPRRMAPLESTLERPYKRSSINESVPVCLAKGGGSSSPGGFRDADETLRRRCLCGSQRCRGLLP 1119
GC C+ + +CPCAR G APLFEC+A C C C R Q G R+++ +KGWG ++ I GTFV EY GE L L+EAR+RV A NY++ +E GG QV T VD T GNV RF NHSCEP L + +R SM P+LA F D+ AG EL YDY RF R + P E ++ + E D LR+ C CGS C LP
Sbjct: 23 GCPCRA-----RSCSPHSCPCARR------GAAPLFECNAMCRCSDGCGKRVVQRG---LRVRLQVFLTDKKGWGVRALQPIAEGTFVCEYAGEVLGLDEARRRVRAQTAQDNNYIIAVREHVHGG-QVLETFVDPTYVGNVGRFLNHSCEPNLVMVPVRVDSMVPKLALFAAADISAGEELCYDYSG------------RF--------RNLPPNEG------EQKAAEE---------------------DNVLRKPCFCGSPTCAAFLP 232
BLAST of mRNA_A-nodosum_M_contig12.29.1 vs. uniprot
Match: UPI001A9863EB (histone-lysine N-methyltransferase SETMAR n=1 Tax=Gasterosteus aculeatus aculeatus TaxID=481459 RepID=UPI001A9863EB) HSP 1 Score: 142 bits (357), Expect = 1.320e-35 Identity = 107/318 (33.65%), Postives = 139/318 (43.71%), Query Frame = 1
Query: 232 PSFRYLNEAICPSGRAPDRGDL-LAGCSCKVV-CGGDKDEERPTCPCARLNA-------------SVQSGY-APLFECHAACSCDLKCPLRATQPGGGRSIPRMKLGFISQKGWGAFSVDAIPRGTFVAEYTGEALTLEEARKRVCAYDRDGLNYVLITQEFFQGGKQVWRTVVDATTSGNVSRFFNHSCEPTLSVFAIRRGSMTPRLAFFTLEDVVAGSELTYDYEAAGSAGGNSNCGERFSQPALKVPRRMAPLESTLERPYKRSSINESVPVCLAKGGGSSSPGGFRDADETLRRRCLCGSQRCRGLLPCNRTII 1137
P F+Y + + G D ++ L GCSC+ C D TCPC R + SGY +P+FEC+A C+C C R Q GG + R+++ KGWG ++ AIPRGTFV EY GE + LEEAR+R A NY++ +E G V T VD GN RF NHSC P L + +R S+ PRLA F +V A ELT+DY GG N R L PR GG+ D R+ C CG+ C LP + +II
Sbjct: 24 PQFQYSPDNVQGPGCTTDPSEVTLPGCSCRSASCCSD------TCPCLRTCGRAYDGAGALLALGAAGSGYCSPVFECNALCACSDACSSRVVQ--GGLRL-RLEVYATENKGWGVRTLQAIPRGTFVCEYAGEVIGLEEARRRQLAQRPGDNNYIIAVREH-AGEGSVTETFVDPAAVGNAGRFLNHSCRPNLFMQPVRVHSLVPRLALFAGRNVAAREELTFDY-----TGGYGN---RLPAERLATPR----------------------------DGGT---------DGLQRKECHCGANNCGRFLPLDLSII 286
BLAST of mRNA_A-nodosum_M_contig12.29.1 vs. uniprot
Match: A0A6P3WB48_CLUHA (histone-lysine N-methyltransferase SETMAR n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3WB48_CLUHA) HSP 1 Score: 140 bits (353), Expect = 8.380e-35 Identity = 100/335 (29.85%), Postives = 150/335 (44.78%), Query Frame = 1
Query: 181 LESIRIPADLS-IGGPVPPSFRYLNEAICPSGRAPDRGDL-LAGCSCKVVCGGDKDEERPTCPCARLNASVQSGY--------------APLFECHAACSCDLKCPLRATQPGGGRSIPRMKLGFISQKGWGAFSVDAIPRGTFVAEYTGEALTLEEARKRVCAYDRDGLNYVLITQEFFQGGKQVWRTVVDATTSGNVSRFFNHSCEPTLSVFAIRRGSMTPRLAFFTLEDVVAGSELTYDYEAAGSAGGNSNCGERFSQPALKVPRRMAPLESTLERPYKRSSINESVPVCLAKGGGSSSPGGFRDADETLRRRCLCGSQRCRGLLPCNRTII 1137
LE++ + D S +G P+F+Y E + G + D ++ L GC C + + + C C + G P+FEC+A C C C R Q G R+ + +GWG +++AIPRG+FV EY GE + LEEAR R + + +NY++ +E+ G+ T VD GNV RF NHSC+P L + +R SM PRL+ F ++D+V ELT+DY R++ K+ L S ++S ES GS R+ C CG+ C G LP + T++
Sbjct: 21 LENVVVVIDSSDVGKGEFPNFQYTPENVPGPGCSSDPSEITLPGCQCHL-----QSCQSEQCQCLQRYGPAYDGQHRLLGRRDEESHYSRPVFECNALCDCSEDCSNRVVQKGVSL---RLCVYRTKDRGWGVRTMEAIPRGSFVCEYAGEVIGLEEARLRQLSQGPEDMNYIIAVREYAGEGESR-ETFVDPLARGNVGRFINHSCQPNLFMVPVRVHSMVPRLSLFAVQDIVPDEELTFDYSG------------RYNNHTAKI------LTSEQSHMSEQSDQGEST--------GS-----------LQRKHCHCGALNCTGYLPLDITVL 309
BLAST of mRNA_A-nodosum_M_contig12.29.1 vs. uniprot
Match: UPI0012EDE427 (histone-lysine N-methyltransferase SETMAR n=1 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012EDE427) HSP 1 Score: 139 bits (349), Expect = 2.440e-34 Identity = 107/337 (31.75%), Postives = 147/337 (43.62%), Query Frame = 1
Query: 181 LESIRIPADLSIGGPVPPSFRYLNEAICPSGRAPDRGDL-LAGCSCKV-VCGGDKDEERPTCPCARLNASV-------------QSGY-APLFECHAACSCDLKCPLRATQPGGGRSIPRMKLGFISQKGWGAFSVDAIPRGTFVAEYTGEALTLEEARKRVCAYDRDGLNYVLITQEFFQGGKQVWRTVVDATTSGNVSRFFNHSCEPTLSVFAIRRGSMTPRLAFFTLEDVVAGSELTYDYEAAGSAGGNSNCGERFSQPALKVPRRMAPLESTLERPYKRSSINESVPVCLAKGGGSSSPGGFRDADETLRRRCLCGSQRCRGLLPCNRTII*R 1143
LE++ + + S P F+Y + I G D ++ L GCSC+ C + C C R SGY AP+FEC+A C+C C R Q GG + R+++ KGWG ++ AIPRGTFV EY GE + LEEAR+R A + NY++ +E G V T VD GNV RF NHSC+P L + +R S+ PRLA F ++ A ELT+DY GG SN P + S + ++ D R+ C CG+ C LP + +II R
Sbjct: 13 LENVPVFIERSSADMTFPEFQYSTDNIQGPGCTADPTEVALPGCSCRSRSCCAEN------CTCLRTRGRAYDSAGALLTLGPTDSGYCAPVFECNALCACSDACSNRVVQ--GGMRL-RLEVYGTENKGWGVRTLGAIPRGTFVCEYAGEVIGLEEARRRQLAQSSEENNYIIAVREH-AGTGAVAETFVDPAAVGNVGRFLNHSCQPNLFMQPVRVHSLVPRLALFAGRNIDAQEELTFDY-----TGGYSN-----------------------HLPVELLSTQRDADIWASR------------TDGLQRKECHCGANNCVHFLPLDLSIINR 299
BLAST of mRNA_A-nodosum_M_contig12.29.1 vs. uniprot
Match: UPI001C70E26D (uncharacterized protein LOC122257601 n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C70E26D) HSP 1 Score: 145 bits (366), Expect = 4.460e-34 Identity = 103/315 (32.70%), Postives = 146/315 (46.35%), Query Frame = 1
Query: 292 DLLAGCSCKVVCGGDKDEERPTCPC----------ARLNASVQSGYAPLFECHAACSCDLKCPLRATQPGGGRSIPRMKLGFISQKGWGAFSVDAIPRGTFVAEYTGEALTLEEARKRVCAYDRDGLNYVLITQEFFQG---GKQVWRTVVDATTSGNVSRFFNHSCEPTLSVFAIRRGSMTPRLAFFTLEDVVAGSELTYDYEAAGSAGGNSNCGERFSQPALKVPRRMAPLESTLERPYK--------RSSIN--ESVPVC--------------LAKGGGSSSPGGFRDADETLRRRCLCGSQRCRGLLPCN 1125
D + GC C VC D C C +L+AS G P+FEC+ C CD CP R Q G + +++ ++KG+G ++ IP+ TFV EY GE ++++EA+ R + NY+L+ +E F G G Q+ T++D T GN+ R+ NHSC P L V +R SM P A F + D+ AG EL YDY+++ GG S AL+ R E E P SS + E+V C +A G G PG + + CLCGS+ C+ LP N
Sbjct: 1105 DQIEGCKCIGVCSED-------CTCIVQFGQPYRDGKLDAS--HGINPIFECNDECGCDECCPNRLVQKG---PLIGLEITLYAEKGFGVRTIHFIPKYTFVCEYAGELISIQEAQNRFAKQKENESNYILVMREHFWGEKTGPQI--TIIDPTVIGNLGRYLNHSCNPNLIVVPVRIDSMVPVAALFAIRDIHAGEELCYDYDSSNDIGGTPQLSASTS--ALQKQRSYIVREELCEDPQNYVTSVAVGASSGDDIENVAQCRYEQQGKVMKKMLNIAHGSGHK-PG--------IPKPCLCGSENCKVFLPVN 1394
BLAST of mRNA_A-nodosum_M_contig12.29.1 vs. uniprot
Match: UPI0018A7DB5A (uncharacterized protein LOC119585994 n=2 Tax=Penaeus TaxID=133894 RepID=UPI0018A7DB5A) HSP 1 Score: 143 bits (361), Expect = 2.040e-33 Identity = 94/309 (30.42%), Postives = 144/309 (46.60%), Query Frame = 1
Query: 292 DLLAGCSCKVVCGGDKDEERPTCPCA------RLNASVQSGYA--PLFECHAACSCDLKCPLRATQPGGGRSIPRMKLGFISQKGWGAFSVDAIPRGTFVAEYTGEALTLEEARKRVCAYDRDGLNYVLITQEFFQG---GKQVWRTVVDATTSGNVSRFFNHSCEPTLSVFAIRRGSMTPRLAFFTLEDVVAGSELTYDYEAAGSAGGNSNCGERFSQPALKVPRRMAPLESTLERPYKRSSINESVPVCLAKGGGSS--SPGGFRDADETLR---------------RRCLCGSQRCRGLLPCNRTI 1134
D + GC C C D C C + + +GY P+FEC+ C CD CP R Q G + +++ S+KG+G + IP+ +FV EY GE ++++EA+ R + NY+L+ +E F G G Q+ TVVD T GN+ R+ NHSC P L V +R SM P A F + D+ G EL YDY+++ + G S S + R + L L ++S+ S V + G S G++ ++ ++ + CLCGS+ C+ LP N +
Sbjct: 1179 DQIEGCKCAGTCSKD-------CTCIVQFGQPYKDGKLDAGYGINPIFECNDECGCDECCPNRLVQKG---PLNGLEITLYSEKGFGVRTTYFIPQNSFVCEYAGELISIQEAKIRFEKQKENESNYILVMREHFGGEKTGPQI--TVVDPTVIGNLGRYINHSCSPNLIVVPVRIDSMVPVAALFAIRDIQPGEELCYDYDSSNNISGASQLAMNMSS----LQRGRSSLFRDLSFEDAQNSVTSSA-VATSSGENQENYSQSGYKQQEQVMKMLNVAHESGSKPVISKPCLCGSENCKVFLPVNNML 1470
BLAST of mRNA_A-nodosum_M_contig12.29.1 vs. uniprot
Match: A0A1Y1ZE84_9FUNG (Histone-lysine N-methyltransferase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1ZE84_9FUNG) HSP 1 Score: 136 bits (342), Expect = 2.210e-33 Identity = 94/265 (35.47%), Postives = 132/265 (49.81%), Query Frame = 1
Query: 106 MSRGISPEPIPCQSLLPRSCSAGLRLESIRIPADLSIGGPVPPSFRYLNEAICPSGRAPDRGDLLAGCSCKVVCGGDKDEERPTC-------PCARLNASVQSGYAPLFECHAACSCDLKCPLRATQPGGGRSIPRMKLGFISQKGWGAFSVDAIPRGTFVAEYTGEALTLEEARKRVCAYDRDGLNYVLITQEFFQGGKQVWRTVVDATTSGNVSRFFNHSCEPTLSVFAI---RRGSMTPRLAFFTLEDVVAGSELTYDYEAA 870
M + P + Q LL ++ ++ I + ++ GP P +F+++NE I G D L GC C C K + TC P R +Q G A ++EC++ C C C R Q G R+I +++ KGWG +++ IP+GTFV EY GE +T EEA KR AYD GL Y L +F G + +DA GNVS FFNHSC+P L V+ + RLAFF +D+ +ELT+DY A
Sbjct: 1 MKQPPKPNVLAFQELLDKA-----KVPKISVVNEIDDMGP-PANFQFINENIYTKGVPKMSTDFLVGCECTDGCS-PKTAKNCTCIANMDSLPYRRGKLQLQPGQA-IYECNSLCKCGPDCSNRVVQKG--RTI-ELQIVKTQHKGWGVRTMEPIPKGTFVEEYAGEIITNEEAEKRGQAYDACGLTY-LFDLDFECGAESDCDFTIDAYRYGNVSHFFNHSCDPNLRVYPVFVDHWNLKMHRLAFFATKDIPRFTELTFDYAGA 253
BLAST of mRNA_A-nodosum_M_contig12.29.1 vs. uniprot
Match: A0A2G5BAS7_COERN (Histone-lysine N-methyltransferase n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BAS7_COERN) HSP 1 Score: 134 bits (337), Expect = 3.150e-32 Identity = 80/231 (34.63%), Postives = 113/231 (48.92%), Query Frame = 1
Query: 229 PPSFRYLNEAICPSGRAPDRGDLLAGCSCKVVCGGDKDEERPTCPCARLN-------ASVQSGYAPLFECHAACSCDLKCPLRATQPGGGRSIPRMKLGFISQKGWGAFSVDAIPRGTFVAEYTGEALTLEEARKRVCAYDRDGLNYVLITQEFFQGGKQVWRTVVDATTSGNVSRFFNHSCEPTLSVFAIRRGSMTPRL---AFFTLEDVVAGSELTYDYEAAGSAGGNS 891
P +F Y+N+++C S P + C CK C D CPC R V++G A L EC C C + C R Q G G + ++ KGWG + A+ RGTF+ EY GE ++ EEA +R A GL Y+ GG ++ +DA GN++ FFNHSC+P + ++ + PRL AFF D++AG EL +DY A S GG +
Sbjct: 107 PENFVYINKSVC-SDEVPRPCSPMFPCECKDKCVAD-------CPCVRERYYDKNGRVQVEAGTA-LMECGPKCGCGVNCSTRVVQRGSG---VKFEIQRYEHKGWGVVTRTALARGTFIGEYVGELISFEEAEERGLADTAMGLTYLFDVDMACTGG-EIADFSIDAKMQGNITHFFNHSCQPNMEIYPVYVEHRDPRLHRMAFFAARDILAGEELAFDYSPAASDGGGA 324 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig12.29.1 >prot_A-nodosum_M_contig12.29.1 ID=prot_A-nodosum_M_contig12.29.1|Name=mRNA_A-nodosum_M_contig12.29.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=345bp MSRGISPEPIPCQSLLPRSCSAGLRLESIRIPADLSIGGPVPPSFRYLNEback to top mRNA from alignment at A-nodosum_M_contig12:354783..358949+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig12.29.1 ID=mRNA_A-nodosum_M_contig12.29.1|Name=mRNA_A-nodosum_M_contig12.29.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4167bp|location=Sequence derived from alignment at A-nodosum_M_contig12:354783..358949+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig12:354783..358949+ >mRNA_A-nodosum_M_contig12.29.1 ID=mRNA_A-nodosum_M_contig12.29.1|Name=mRNA_A-nodosum_M_contig12.29.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1035bp|location=Sequence derived from alignment at A-nodosum_M_contig12:354783..358949+ (Ascophyllum nodosum dioecious)back to top |