mRNA_A-nodosum_M_contig11985.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11985.2.1
Unique NamemRNA_A-nodosum_M_contig11985.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11985.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11985contigA-nodosum_M_contig11985:2858..3329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size182
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866616.2928994-CDS-A-nodosum_M_contig11985:2857..29601680866616.2928994-CDS-A-nodosum_M_contig11985:2857..2960Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11985 2858..2960 +
1680866616.302798-CDS-A-nodosum_M_contig11985:3251..32831680866616.302798-CDS-A-nodosum_M_contig11985:3251..3283Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11985 3252..3283 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866616.311-UTR-A-nodosum_M_contig11985:3283..33291680866616.311-UTR-A-nodosum_M_contig11985:3283..3329Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11985 3284..3329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11985.2.1prot_A-nodosum_M_contig11985.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11985 2858..3283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11985.2.1

>prot_A-nodosum_M_contig11985.2.1 ID=prot_A-nodosum_M_contig11985.2.1|Name=mRNA_A-nodosum_M_contig11985.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=45bp
RQERLNEERGQTSWSEREIGPVESELERYFSAKASQKTIMAERR*
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mRNA from alignment at A-nodosum_M_contig11985:2858..3329+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11985.2.1 ID=mRNA_A-nodosum_M_contig11985.2.1|Name=mRNA_A-nodosum_M_contig11985.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=472bp|location=Sequence derived from alignment at A-nodosum_M_contig11985:2858..3329+ (Ascophyllum nodosum dioecious)
CGTCAGGAGAGGCTTAACGAGGAGCGAGGCCAAACCTCATGGAGCGAGAG
AGAGATAGGCCCCGTCGAGAGCGAACTTGAACGGTACTTCTCTGCGAAAG
CAAGTTGAGCAGCACAGCAGCATAAGCCCTTACAGCGCCCTGGTTGCGCC
CGAGGACGTTTTTTTTTCCTATGCTGACAGAATATTATACAGTACCACCC
ACAGACAAGATATTTCTCTTCTTTTTGGGTCAAGATATCGTTTGCGATAC
AGTATAATCTTTCTTTTACCTCTGTAATGCCAAAATATTTGGATTTTTTT
GCtTTTTTGCCCTCCTCGGCCCAGCGAACGCAGCGAACGACTGTTATTAA
TAATAATAATAGGCAATGACTGCCCCCTTGCGTTGTGGTTTCAGGTCAGA
AAACAATCATGGCAGAACGGAGATAAAGGAAGGAAAACAATCGGGGTGCT
TCGACTTTTGCCACTCGTATAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11985:2858..3329+

>mRNA_A-nodosum_M_contig11985.2.1 ID=mRNA_A-nodosum_M_contig11985.2.1|Name=mRNA_A-nodosum_M_contig11985.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=135bp|location=Sequence derived from alignment at A-nodosum_M_contig11985:2858..3329+ (Ascophyllum nodosum dioecious)
CGTCAGGAGAGGCTTAACGAGGAGCGAGGCCAAACCTCATGGAGCGAGAG
AGAGATAGGCCCCGTCGAGAGCGAACTTGAACGGTACTTCTCTGCGAAAG
CAAGTCAGAAAACAATCATGGCAGAACGGAGATAA
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