mRNA_A-nodosum_M_contig11896.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11896.2.1
Unique NamemRNA_A-nodosum_M_contig11896.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11896.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11896contigA-nodosum_M_contig11896:2275..2945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size141
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866602.3870325-UTR-A-nodosum_M_contig11896:2274..22891680866602.3870325-UTR-A-nodosum_M_contig11896:2274..2289Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11896 2275..2289 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866602.397971-CDS-A-nodosum_M_contig11896:2289..23521680866602.397971-CDS-A-nodosum_M_contig11896:2289..2352Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11896 2290..2352 -
1680866602.4098244-CDS-A-nodosum_M_contig11896:2867..29451680866602.4098244-CDS-A-nodosum_M_contig11896:2867..2945Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11896 2868..2945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11896.2.1prot_A-nodosum_M_contig11896.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11896 2290..2945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11896.2.1

>prot_A-nodosum_M_contig11896.2.1 ID=prot_A-nodosum_M_contig11896.2.1|Name=mRNA_A-nodosum_M_contig11896.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=47bp
YSGRFRSTSFSRRTADINDINRTKLEVGADARFGDGDIEQQREPRA*
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mRNA from alignment at A-nodosum_M_contig11896:2275..2945-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11896.2.1 ID=mRNA_A-nodosum_M_contig11896.2.1|Name=mRNA_A-nodosum_M_contig11896.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=671bp|location=Sequence derived from alignment at A-nodosum_M_contig11896:2275..2945- (Ascophyllum nodosum dioecious)
TACTCAGGGCGATTCCGTAGCACATCATTTTCCCGTCGCACAGCGGATAT
CAACGATATCAACCGAACAAAACTTGAGGTATGTAAAGGTGCCGAATACC
TTGAAATAAATGCGGATGGAGAAACAAGGCAAGGGCCTTGCATCGAAAGA
AACCCCTGGAAGACATATTTCATCTTTCTCCTTAGTCGTGCCAGTTTGTC
GGGCAGCCAGCCCAAATCCGGCGTGTTGATATCTCCTGCGGCGAAATCAC
ATTTGTGTTACCGTCTTCTCCCAGCAGTCAGGATCCGCAGTTTAGTACAG
ACAGTCAGTAGTGCACCACCATCGACGCTCGTAATCTATAGCGATAATTC
TTCGAGAGCATCTTCACAGCTCCAGTGGCGCAAGGTGTCGCATCCATTTC
TCACGGAAAAGAGAGAAAACATAGATGGCGGGATGATCGTCCGACGAGGG
GTTCGCATGGTTGGGATTTCAGCCCGCATGGTTCCACGAAGTCACAGCGA
AACAAAACATTCACCCTCCCGGTTATCCACCTTTCACTCGATTGCGTCGA
CGAGGTGTTTTCCTGTCTGGCGTGCTGCATTGTCTATTAATAGGTTGGAG
CTGACGCAAGGTTTGGCGATGGTGATATCGAGCAGCAGCGAGAGCCCAGA
GCCTAGAGGGTAACCAGCACT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11896:2275..2945-

>mRNA_A-nodosum_M_contig11896.2.1 ID=mRNA_A-nodosum_M_contig11896.2.1|Name=mRNA_A-nodosum_M_contig11896.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=141bp|location=Sequence derived from alignment at A-nodosum_M_contig11896:2275..2945- (Ascophyllum nodosum dioecious)
TACTCAGGGCGATTCCGTAGCACATCATTTTCCCGTCGCACAGCGGATAT
CAACGATATCAACCGAACAAAACTTGAGGTTGGAGCTGACGCAAGGTTTG
GCGATGGTGATATCGAGCAGCAGCGAGAGCCCAGAGCCTAG
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