mRNA_A-nodosum_M_contig1181.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1181.18.1
Unique NamemRNA_A-nodosum_M_contig1181.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1181.18.1 vs. uniprot
Match: D7FNM0_ECTSI (Tetrahydrofolate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM0_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 9.540e-42
Identity = 75/125 (60.00%), Postives = 89/125 (71.20%), Query Frame = 1
Query:   10 AGC-KLEMVDALPTHDPAGIPYDIGLAGEHQLVNAGLALRLCAAWMEERQQRQSRSMVGSQG--------MKVFLRSAEVHKGLSECSWPGRCQVFRPPDFPPLTVYLDGAHTEQSMHACLQWFI 357
            AGC +LE+V  LPT DP G  Y+IGLAG+HQ VNA LALRLCA W+E  +Q+Q +   G Q          + F  SA+VH+GLS C WPGRCQVFRPP FP +T+YLDGAHTEQSM ACL WF+
Sbjct:  287 AGCGELEVVKPLPTRDPCGRAYEIGLAGDHQRVNAALALRLCAVWIEAHRQQQQQQHAGDQAPPAEKIHDTETFWASADVHRGLSCCVWPGRCQVFRPPAFPSVTIYLDGAHTEQSMRACLGWFV 411          
BLAST of mRNA_A-nodosum_M_contig1181.18.1 vs. uniprot
Match: A0A6H5L5N3_9PHAE (Tetrahydrofolate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N3_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 2.700e-39
Identity = 72/125 (57.60%), Postives = 85/125 (68.00%), Query Frame = 1
Query:   10 AGC-KLEMVDALPTHDPAGIPYDIGLAGEHQLVNAGLALRLCAAWMEERQQRQSRSMVGSQG--------MKVFLRSAEVHKGLSECSWPGRCQVFRPPDFPPLTVYLDGAHTEQSMHACLQWFI 357
            AGC +LE+V  LP  DP G  Y+IGLAG+HQ VNA LALRLC  W+E  +Q+      G Q          + F  SAEVH+GLS C WPGRCQVFRPP FP +T++LDGAHTEQSM ACL WF+
Sbjct:  207 AGCSELEVVKPLPARDPCGRAYEIGLAGDHQRVNAALALRLCDVWIEAHRQQXXXXXAGDQAPPPEKIRETEAFWASAEVHRGLSCCVWPGRCQVFRPPAFPSVTIHLDGAHTEQSMRACLGWFV 331          
BLAST of mRNA_A-nodosum_M_contig1181.18.1 vs. uniprot
Match: A0A8C6TD94_9GOBI (Folylpolyglutamate synthase n=6 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6TD94_9GOBI)

HSP 1 Score: 91.3 bits (225), Expect = 4.720e-19
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 SQEAGCKLEMVDALPTHDPAGIPYDIGLAGEHQLVNAGLALRLCAAWMEERQQRQSRSM-VGSQGMKVFLRSAEVHKGLSECSWPGRCQVFRPPDFPPLTVYLDGAHTEQSMHACLQWF 354
            ++E GC L++  +L  +D   +P  +GLAG+HQL NA LAL+L  AW++ +     +S+ V    MK+F+       GL++  WPGR Q  +  D   +T YLDGAHT +SM AC+QWF
Sbjct:  242 AKEIGCSLQVCPSLVDYDSDCVPVTLGLAGQHQLPNASLALQLSHAWLKRKCLLGEKSVNVVQLSMKLFI-CVCCDLGLADTEWPGRNQTLKHGD---ITYYLDGAHTMRSMLACVQWF 356          
BLAST of mRNA_A-nodosum_M_contig1181.18.1 vs. uniprot
Match: H3BC11_LATCH (Folylpolyglutamate synthase n=3 Tax=Latimeria chalumnae TaxID=7897 RepID=H3BC11_LATCH)

HSP 1 Score: 89.0 bits (219), Expect = 3.190e-18
Identity = 47/130 (36.15%), Postives = 70/130 (53.85%), Query Frame = 1
Query:    1 SQEAGCKLEMVDALPTHDPAGIPYDIGLAGEHQLVNAGLALRLCAAWMEERQQRQ-----SRSMVGSQGMKV-------FLRSAEVHKGLSECSWPGRCQVFRPPDFPPLTVYLDGAHTEQSMHACLQWF 354
            ++E GC L +   L  ++  G+ + +GLAGEHQ VNA LAL+LC  W+  ++  +       S   + G+ +       F   +   KGL +  WPGR Q+ +     PLT YLDGAHT  S++ C +WF
Sbjct:  272 AREIGCPLYVCPGLEEYERDGVKFQLGLAGEHQRVNAALALQLCRTWLHRQRYPELDAETDSSPADTLGLSIHPPTALPFRLCSPTVKGLRDAEWPGRTQILK---HGPLTYYLDGAHTIGSVNVCTRWF 398          
BLAST of mRNA_A-nodosum_M_contig1181.18.1 vs. uniprot
Match: UPI001CFC1D65 (folylpolyglutamate synthase, mitochondrial isoform X1 n=3 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFC1D65)

HSP 1 Score: 86.7 bits (213), Expect = 2.070e-17
Identity = 46/132 (34.85%), Postives = 68/132 (51.52%), Query Frame = 1
Query:    1 SQEAGCKLEMVDALPTHDPAGIPYDIGLAGEHQLVNAGLALRLCAAWMEERQQRQSRSMVGSQGMKV--------------FLRSAEVHKGLSECSWPGRCQVFRPPDFPPLTVYLDGAHTEQSMHACLQWF 354
            ++E GC L +   L   +  G+ +++G  G+HQ +NA LAL+LC  W+++RQ +     V    + V              F  S  + +GL    WPGR  V       PLT Y+DGAHT+ SM AC++WF
Sbjct:  278 AREIGCSLHLCPDLDDFELEGVKFELGPEGDHQRLNAALALQLCRTWLQQRQYQDF--FVAQDAVHVPELSTSGRPPLTSTFRPSLAMLEGLRNTEWPGRTHVL---SHGPLTYYIDGAHTKSSMQACIKWF 404          
BLAST of mRNA_A-nodosum_M_contig1181.18.1 vs. uniprot
Match: UPI001176D850 (folylpolyglutamate synthase, mitochondrial-like n=1 Tax=Salarias fasciatus TaxID=181472 RepID=UPI001176D850)

HSP 1 Score: 86.3 bits (212), Expect = 2.760e-17
Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    1 SQEAGCKLEMVDALPTHDPAGIPYDIGLAGEHQLVNAGLALRLCAAWMEERQ-QRQSRSMVGSQGMKV-FLRSAEVHKGLSECSWPGRCQVFRPPDFPPLTVYLDGAHTEQSMHACLQWF 354
            ++E  C L +   L  ++ A  P  +GLAG HQ +NA LAL+L ++W++  + QR + ++ G       F  S  + +GL E  WPGR Q        P+T YLDGAHT +SM AC+ WF
Sbjct:  280 AEEIQCPLVVSPELHQYEAAVGPVRLGLAGSHQRLNASLALQLSSSWLQRHKAQRAAHTLNGLNSQNASFQPSMAMLRGLQETEWPGRSQTL---SCGPVTYYLDGAHTAESMQACVSWF 396          
BLAST of mRNA_A-nodosum_M_contig1181.18.1 vs. uniprot
Match: UPI0003F05E01 (uncharacterized protein LOC102800632 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F05E01)

HSP 1 Score: 85.9 bits (211), Expect = 3.870e-17
Identity = 48/130 (36.92%), Postives = 65/130 (50.00%), Query Frame = 1
Query:    1 SQEAGCKLEMVDALPTHDPAGIPYDIGLAGEHQLVNAGLALRLCAAWMEERQQRQSRSMVGS------------QGMKVFLRSAEVHKGLSECSWPGRCQVFRPPDFPPLTVYLDGAHTEQSMHACLQWF 354
            + E    +++V  L  +D  G P  +GLAGEHQ +NA LA++LC  W+EE     S    G             Q    F   A    GL +C  PGR Q+ +  +   +T YLDGAHT  SM AC++WF
Sbjct:  200 ANEIHAPIQIVPDLDDYDWQGKPMKLGLAGEHQRINASLAIQLCRTWIEEHNLHHSDKRAGFGHTNTYSMDGNIQTASAFKLPATFISGLRDCCLPGRTQIIKHDN---VTYYLDGAHTPMSMKACVKWF 326          
BLAST of mRNA_A-nodosum_M_contig1181.18.1 vs. uniprot
Match: UPI001B887F3B (folylpolyglutamate synthase, mitochondrial-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B887F3B)

HSP 1 Score: 85.5 bits (210), Expect = 5.210e-17
Identity = 51/128 (39.84%), Postives = 68/128 (53.12%), Query Frame = 1
Query:    1 SQEAGCKLEMVDALPTHDPAGIPYDIGLAGEHQLVNAGLALRLCAAWMEERQQRQSR--------SMVGSQGMKVFLRSAEVHKGLSECSWPGRCQ-VFRPPDFPPLTVYLDGAHTEQSMHACLQWFI 357
            SQE G  L  V  L     AG    +G+ G  Q VNAGLAL+LC  ++    +            S+     + V+  S E  KGL+ CSWPGR Q ++RP     LT YLDGAHT++SM  C++WF+
Sbjct:  238 SQEIGASLYRVPTLHEFCAAGQQIRLGIEGNIQFVNAGLALQLCRVFLHRTNKENQYVYDVLSVPSVKDIPMLPVYQLSPEETKGLALCSWPGRAQTIYRP----RLTYYLDGAHTKESMQQCVEWFL 361          
BLAST of mRNA_A-nodosum_M_contig1181.18.1 vs. uniprot
Match: UPI0001CBB6FF (folylpolyglutamate synthase, mitochondrial-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBB6FF)

HSP 1 Score: 85.1 bits (209), Expect = 7.150e-17
Identity = 47/131 (35.88%), Postives = 74/131 (56.49%), Query Frame = 1
Query:    1 SQEAGCKLEMVDALPTHDPAGIPYDIGLAGEHQLVNAGLALRLCAAWMEERQ-----QRQSRSMVGSQGMKVFLRSAE--------VHKGLSECSWPGRCQVFRPPDFPPLTVYLDGAHTEQSMHACLQWF 354
            + E    +++V  L T+D  G P  +G+AGEHQ +NA LA++LCA WMEE       Q+ +   + ++ +   + +A         +H GL  C WPGR Q  +  +   +T YLD AHT++S+ AC++WF
Sbjct:  307 ANEKHTPIQLVPNLDTYDWQGKPIKLGIAGEHQHMNASLAIQLCATWMEENNESIGDQKTNFESIYNENLNGSIPTAPAFTLPDTFIH-GLQNCYWPGRTQTIKREN---VTYYLDSAHTKKSIVACVKWF 433          
BLAST of mRNA_A-nodosum_M_contig1181.18.1 vs. uniprot
Match: A0A2T7NKS8_POMCA (Tetrahydrofolate synthase n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NKS8_POMCA)

HSP 1 Score: 85.1 bits (209), Expect = 7.220e-17
Identity = 46/126 (36.51%), Postives = 63/126 (50.00%), Query Frame = 1
Query:   16 CKLEMVDALPTHDPAGIPYDIGLAGEHQLVNAGLALRLCAAWMEERQ------------QRQSRSMVGSQGMKVFLRSAEVHKGLSECSWPGRCQVFRPPDFPPLTVYLDGAHTEQSMHACLQWFI 357
            C L + + L   D       +G+AG+ Q+ NAGLA+ LC  W+  R             Q Q  S+     +     + E+  GLS+CSWPGR Q  R P    +T YLDGAHT  SM  C++WF+
Sbjct:  336 CPLYVAEPLTAEDLMAYKLTLGIAGDRQVYNAGLAVHLCQVWLNSRNPGLGGQIYHLKNQPQVTSISSIPRLNKHQLTREMITGLSQCSWPGRNQTVRKPG---VTYYLDGAHTTDSMQQCVRWFL 458          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1181.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNM0_ECTSI9.540e-4260.00Tetrahydrofolate synthase n=1 Tax=Ectocarpus silic... [more]
A0A6H5L5N3_9PHAE2.700e-3957.60Tetrahydrofolate synthase n=1 Tax=Ectocarpus sp. C... [more]
A0A8C6TD94_9GOBI4.720e-1942.02Folylpolyglutamate synthase n=6 Tax=Neogobius mela... [more]
H3BC11_LATCH3.190e-1836.15Folylpolyglutamate synthase n=3 Tax=Latimeria chal... [more]
UPI001CFC1D652.070e-1734.85folylpolyglutamate synthase, mitochondrial isoform... [more]
UPI001176D8502.760e-1739.17folylpolyglutamate synthase, mitochondrial-like n=... [more]
UPI0003F05E013.870e-1736.92uncharacterized protein LOC102800632 n=1 Tax=Sacco... [more]
UPI001B887F3B5.210e-1739.84folylpolyglutamate synthase, mitochondrial-like n=... [more]
UPI0001CBB6FF7.150e-1735.88folylpolyglutamate synthase, mitochondrial-like n=... [more]
A0A2T7NKS8_POMCA7.220e-1736.51Tetrahydrofolate synthase n=2 Tax=Pomacea canalicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1181contigA-nodosum_M_contig1181:186738..187537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FNM0
Preferred nameFPGS
PFAMsMtN3_slv,Mur_ligase_M
Model size357
Max annot lvl2759|Eukaryota
KEGG rclassRC00064,RC00090,RC00162
KEGG koko:K01930
KEGG ReactionR00942,R02237,R04241
KEGG Pathwayko00790,ko01100,ko01523,map00790,map01100,map01523
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004326,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0046900,GO:0046901,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons3
Evalue2.47e-40
EggNOG OGsCOG0285@1|root,KOG2525@2759|Eukaryota
EC6.3.2.17
Descriptiontetrahydrofolylpolyglutamate synthase activity
Cds size330
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866598.6448731-CDS-A-nodosum_M_contig1181:186737..1868301680866598.6448731-CDS-A-nodosum_M_contig1181:186737..186830Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1181 186738..186830 -
1680866598.65621-CDS-A-nodosum_M_contig1181:187165..1872491680866598.65621-CDS-A-nodosum_M_contig1181:187165..187249Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1181 187166..187249 -
1680866598.667549-CDS-A-nodosum_M_contig1181:187357..1875101680866598.667549-CDS-A-nodosum_M_contig1181:187357..187510Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1181 187358..187510 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866598.6753385-UTR-A-nodosum_M_contig1181:187510..1875371680866598.6753385-UTR-A-nodosum_M_contig1181:187510..187537Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1181 187511..187537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1181.18.1prot_A-nodosum_M_contig1181.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1181 186738..187510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1181.18.1

>prot_A-nodosum_M_contig1181.18.1 ID=prot_A-nodosum_M_contig1181.18.1|Name=mRNA_A-nodosum_M_contig1181.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=110bp
MVDALPTHDPAGIPYDIGLAGEHQLVNAGLALRLCAAWMEERQQRQSRSM
VGSQGMKVFLRSAEVHKGLSECSWPGRCQVFRPPDFPPLTVYLDGAHTEQ
SMHACLQWFI
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mRNA from alignment at A-nodosum_M_contig1181:186738..187537-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1181.18.1 ID=mRNA_A-nodosum_M_contig1181.18.1|Name=mRNA_A-nodosum_M_contig1181.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=800bp|location=Sequence derived from alignment at A-nodosum_M_contig1181:186738..187537- (Ascophyllum nodosum dioecious)
TCGCAAGAAGCGGGCTGTAAACTAGAGATGGTGGACGCACTTCCCACTCA CGATCCGGCCGGCATCCCCTATGACATAGGCCTGGCCGGCGAACATCAGC TAGTCAACGCCGGTTTGGCCTTGCGCTTGTGCGCCGCGTGGATGGAGGAA CGTCAGCAGCGCCAAAGCCGGTCGATGGTTGTCATTCGGTCGACACCAGG CGCGGGGGGTACAACGACGTCCTATTACAGTGAAAGCGGGGGCGCCGGCG TTGTGGGTGGACGTGCAGAGTCTTCTTTGTGTTTCCAGGGTAGCCAAGGC ATGAAAGTGTTCTTGAGGTCGGCAGAGGTGCACAAAGGACTGTCCGAGTG TTCCTGGCCGGGGCGTTGTCAGGTGAGGGGTGGGGGCGGGGCGGAGGGAT TGATGTAAAGCAGCTATCTTTCATCTCAGGGTATGCGCGCGTTACCGCAC GTAAATATTGCGCGCGGTCGCTACTCAAATGTATCCCGGGAGCGATACAC GTCAGGCAACACGGTCGCTCATAATTCCCCCGTCGCCGCGTGCATGGGCG ACAGCAGTTTTGGGCGCACAGAAGAGAAGTAATATGTCCCTGTCCGTGGG TGTTGACCGCCTGTGAGAGCACGTGCAGCGCGAGGCGATGCTATGTAATG CGTCTTCTTTATATGCTGTCATTCTTTCTGACCGGATTGTGCGTAATATT CTCGTAGGTTTTCCGACCTCCGGATTTTCCTCCTTTGACGGTCTACCTCG ACGGGGCGCACACAGAGCAGAGCATGCACGCGTGCCTCCAGTGGTTCATC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1181:186738..187537-

>mRNA_A-nodosum_M_contig1181.18.1 ID=mRNA_A-nodosum_M_contig1181.18.1|Name=mRNA_A-nodosum_M_contig1181.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at A-nodosum_M_contig1181:186738..187537- (Ascophyllum nodosum dioecious)
ATGGTGGACGCACTTCCCACTCACGATCCGGCCGGCATCCCCTATGACAT
AGGCCTGGCCGGCGAACATCAGCTAGTCAACGCCGGTTTGGCCTTGCGCT
TGTGCGCCGCGTGGATGGAGGAACGTCAGCAGCGCCAAAGCCGGTCGATG
GTTGGTAGCCAAGGCATGAAAGTGTTCTTGAGGTCGGCAGAGGTGCACAA
AGGACTGTCCGAGTGTTCCTGGCCGGGGCGTTGTCAGGTTTTCCGACCTC
CGGATTTTCCTCCTTTGACGGTCTACCTCGACGGGGCGCACACAGAGCAG
AGCATGCACGCGTGCCTCCAGTGGTTCATC
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