mRNA_A-nodosum_M_contig1178.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1178.8.1
Unique NamemRNA_A-nodosum_M_contig1178.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1178.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1178contigA-nodosum_M_contig1178:157275..159182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size471
Hectar predicted targeting categoryother localisation
Exons2
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866591.711349-UTR-A-nodosum_M_contig1178:157274..1573171680866591.711349-UTR-A-nodosum_M_contig1178:157274..157317Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1178 157275..157317 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866591.7249832-CDS-A-nodosum_M_contig1178:157317..1576761680866591.7249832-CDS-A-nodosum_M_contig1178:157317..157676Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1178 157318..157676 +
1680866591.733006-CDS-A-nodosum_M_contig1178:159115..1591821680866591.733006-CDS-A-nodosum_M_contig1178:159115..159182Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1178 159116..159182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1178.8.1prot_A-nodosum_M_contig1178.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1178 157318..159182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1178.8.1

>prot_A-nodosum_M_contig1178.8.1 ID=prot_A-nodosum_M_contig1178.8.1|Name=mRNA_A-nodosum_M_contig1178.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=142bp
MPSLTNVYYERSKSKHRPPPSPAAAQSRRHTGGAGGGWSRVRALSSFPTG
LTRSPSSSDIESGHGGPSKSSSQGGGGSLTVSKIGGGGGKGPGGGGGGVD
GDGGDDEGKNGGRYGYALKSYERVNKPRPYREVAAEVVAKGA
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mRNA from alignment at A-nodosum_M_contig1178:157275..159182+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1178.8.1 ID=mRNA_A-nodosum_M_contig1178.8.1|Name=mRNA_A-nodosum_M_contig1178.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1908bp|location=Sequence derived from alignment at A-nodosum_M_contig1178:157275..159182+ (Ascophyllum nodosum dioecious)
AGTTGAACGTCGTGGCCCAGGGGCAAGCCAGTTGTAGGAGAGCATGCCAA
GCCTAACCAATGTCTACTACGAACGGTCTAAATCGAAGCACCGACCCCCT
CCATCACCGGCAGCCGCGCAGTCTAGACGGCATACGGGTGGAGCAGGAGG
AGGATGGAGTCGTGTTCGGGCGCTGAGCTCTTTCCCGACCGGATTAACGC
GCAGTCCTAGCAGCAGTGACATCGAAAGCGGCCATGGCGGTCCCAGCAAA
AGTTCCTCGCAGGGAGGGGGTGGATCGTTGACCGTGAGCAAAATTGGAGG
CGGTGGCGGTAAAGGCCCTGGTGGAGGAGGAGGTGGTGTTGATGGTGATG
GAGGCGACGACGAAGGGAAAAACGGTGGGCGGTACGGCTATGCGTTGAAG
AGGTGAGGATAGGCAACGGGTGTTCGACACTCCCCCTAATATTTACTACG
AAACAAAGAAGATATTTTGGCGTTTTCAATCTCGGCGGAGACTCCGGTTG
CGACGCCCATCCGCTCCACCGCTCACAGCTGGCTAATACCCGTGCCATTC
GGTTGCAACAAGAAAAGAAAGAACTCATGCTATCCCTATTCCCCCGCCTA
GGCTTACCTAGGTCCGCCCGTGACCGACGGGGCTTTGAGCGCTGTTGACA
TTGTGTTGTAAAAACCCAGACAAATGGTTAGGGGTTGCTTGCTTGATGCA
TGGATCACCTGTGCGAACCACCCCAAACCGTTCGCCATATAGACTAAACA
CGTCTACAGAGTTTTCCCTTCCGTACAACTAACAAAGTATAATACCAGTA
TACTATAATATAATATAATATAATATAATATAATAGTGTGATACTCTATG
tCCCAAGCCTCTACATCTCGGAGTCATGATTTCGAAATGGTGTGTTGTAT
TTGGCTTATGCACCTGTGGCGCTGCACCTTGGCGTCCCTTGCGGATCGCA
TGGTGTCTGCGAATTCTAATTACCTTGGTAAGAAATTTGCAGCAGCCGTT
CGATGTGTTACAAGTATTAATTATTGCATTATAGTTCAAACCCGGGAATG
CATCGAAGCCCACCCCACAGATGCAACCCCATGTATTGTCACACATATAG
CAAGAGTATGGATCAACCGGGTAAGGTTGCCAATCTTGCTCGTGGTGAGT
TGAACAGGGAAAAATAATATTTCCCTGTCCCCGTTTGCGCCTGAGAATTT
GGTCTTCCGAAACGGGTTCGGCAGTCCCGTCCCGCGTCAGCCTGCCATTC
CATACTCAGGCTGAATTTGGTGCTTACTGACGGCACTCCTCCTGAGTTCC
GCGGCGGCGTCCATTTATTTATTTAAACCGCCATACGCCATCGGGTCAGC
TCCGAGTTTATCAGGTCACGCAATTGCGTACCAATGGCGTTCACTGCCGA
AAGTCCACCGGCACAGGGCCAGTAAAACCTCAAGGTAGTTCCAGACGGGT
TCTGCCTTGGGAGGTCACCATGGACCAATTAATATTCGCCTCTCTTTCCC
ACACCCACAATAAACTGGTATGAAATGGGCATATGTTGAAAGTCCCGGCG
ATCTGTAGGGTGTTGACTACGTCCGCTGGGAACAAGCGGGTCGGAGTCGG
CTTTCCACTCCTGCTCCGACCGCTGCCTCGACGAGATTTGTGCCGTCCAA
CCCGGACGCGTGTCGCCGAACGCTCATGACAATGGTAGCAGCAGATGGCG
CCAAGCGGACGAATAGCCCAGAGTCTGACTTACAAAGATACAATACCATG
CCGCGTTCGAGCTTCTTTCTTCGGTAGCACATGATCACATCACATCCTTC
CAACGCTACCGTCCCGCCATGCCTTCGTGTCGCACGAACAGCTACGAACG
GGTGAACAAGCCTCGGCCGTACCGGGAAGTGGCCGCAGAAGTGGTCGCAA
AGGGAGCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1178:157275..159182+

>mRNA_A-nodosum_M_contig1178.8.1 ID=mRNA_A-nodosum_M_contig1178.8.1|Name=mRNA_A-nodosum_M_contig1178.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at A-nodosum_M_contig1178:157275..159182+ (Ascophyllum nodosum dioecious)
ATGCCAAGCCTAACCAATGTCTACTACGAACGGTCTAAATCGAAGCACCG
ACCCCCTCCATCACCGGCAGCCGCGCAGTCTAGACGGCATACGGGTGGAG
CAGGAGGAGGATGGAGTCGTGTTCGGGCGCTGAGCTCTTTCCCGACCGGA
TTAACGCGCAGTCCTAGCAGCAGTGACATCGAAAGCGGCCATGGCGGTCC
CAGCAAAAGTTCCTCGCAGGGAGGGGGTGGATCGTTGACCGTGAGCAAAA
TTGGAGGCGGTGGCGGTAAAGGCCCTGGTGGAGGAGGAGGTGGTGTTGAT
GGTGATGGAGGCGACGACGAAGGGAAAAACGGTGGGCGGTACGGCTATGC
GTTGAAGAGCTACGAACGGGTGAACAAGCCTCGGCCGTACCGGGAAGTGG
CCGCAGAAGTGGTCGCAAAGGGAGCG
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