mRNA_A-nodosum_M_contig1175.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE) HSP 1 Score: 201 bits (511), Expect = 1.650e-56 Identity = 99/181 (54.70%), Postives = 128/181 (70.72%), Query Frame = 1
Query: 1 MTRQVTEWTAENEMSVGKQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 543
M ++ W AENEMS G KCG+M + L + P RW++AG+ +PIV YTYLGL F LDV M+ ++A G++LV +TP+L R IPVP+KVAVVRGV +PRLLFGAEV+GM +IT +QV +N+ +RMV GM+ TVS+VA+WRE+ PPICA AAARRAR +QK KL T
Sbjct: 772 MDDHISVWMAENEMSAGIHKCGVMAIGHGRRRLRERPDRWKLAGETLPIVESYTYLGLEFNRRLDVEVMMGNKLAAGEKLVTLMTPYLLCRQIPVPLKVAVVRGVILPRLLFGAEVFGMRTSITNRLQVYVNRAYRMVAGMSPKATVSSVALWRELEIPPICASAAARRARTMQKASKLKT 952
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM) HSP 1 Score: 104 bits (259), Expect = 1.260e-22 Identity = 63/179 (35.20%), Postives = 95/179 (53.07%), Query Frame = 1
Query: 13 VTEWTAENEMSVGKQKCGIMVVNKPLSMLHQTPA-RWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLL-NQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 543
+T W + EM G KC IM ++ P+S L +W + GQ VP+V EY YLG LD+ + RV + K+ + +++PFL R IP+ ++ V + P L+GAE++G+ + T P+ L N + R+ G T + RE+ PP+ A+AAARR RA K L T
Sbjct: 971 ITHWADKWEMQFGVSKCAIMGIDMPISHLSSLREDQWTLQGQPVPLVEEYVYLGTLLHNSLDMKESIRYRVGRAKKALQSVSPFLSCRSIPLHIRSRVFMSMVCPVALYGAELWGLREDRTRPIHSLFANAIQRIAG-------TYTGTLARELRIPPVAALAAARRTRAFFKFPSLKT 1142
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A0F9ZBM3_9MICR (Endonuclease-reverse transcriptase n=2 Tax=Nosema ceranae TaxID=40302 RepID=A0A0F9ZBM3_9MICR) HSP 1 Score: 100 bits (249), Expect = 2.620e-21 Identity = 62/187 (33.16%), Postives = 101/187 (54.01%), Query Frame = 1
Query: 13 VTEWTAENEMSVGKQKCGIMVV----------------NKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQK 525
+T W+ ++EMSV KCGIM + NK + Q P ++I G +VP VSEY YLG+RFT DL + SM+ +KG++ + + L + +PV +K+ ++ L +GAEV+GM+ + +Q ++N+ R+V G RN + + E+G + +AA +RARA+ K
Sbjct: 518 LTSWSEKHEMSVNASKCGIMKIRATEDVIAGGPNFLQPNKKARVEQQEPEPFEIMGNVVPEVSEYIYLGIRFTPDLCLNSMMQHVESKGRKAIGAMYYLLSKKDMPVYVKILSIKVKLQSILTYGAEVWGMSTLRCKGIQRIMNEACRLVVGGGRNAAMDRIR--SELGIQSVANIAAVKRARAVAK 702
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A0R0LX01_9MICR (RNA-directed DNA polymerase, Non LTR Retrotransposon n=1 Tax=Pseudoloma neurophilia TaxID=146866 RepID=A0A0R0LX01_9MICR) HSP 1 Score: 93.2 bits (230), Expect = 8.090e-19 Identity = 53/172 (30.81%), Postives = 93/172 (54.07%), Query Frame = 1
Query: 10 QVTEWTAENEMSVGKQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQK 525
++ EW +MS+ KCG++V + + ++G + ++S+YTYLGL TADLD+ +++++R K +L PFL R +P ++ +VR V +P +G E+YGM+ A P+Q ++++ R + G + N A + E+ P + A RARA+ K
Sbjct: 192 RIDEWCGRWKMSLNVSKCGVVVFGP------EDGVQLSVSGSEIAMLSQYTYLGLPMTADLDLEAIVADRKEKATSAYHSLRPFLLRRHVPAVIRAQIVRAVLVPIATYGCELYGMSSARLHPLQRVIDRAIRDILGCSSN--YCRKAAYEELRIPSMALRGAKLRARAITK 355
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A1J5WU32_9MICR (Reverse transcriptase domain-containing protein n=2 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WU32_9MICR) HSP 1 Score: 88.2 bits (217), Expect = 4.620e-17 Identity = 59/178 (33.15%), Postives = 86/178 (48.31%), Query Frame = 1
Query: 10 QVTEWTAENEMSVGKQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 543
Q+ W EM + +KCG+MV R G +P YTYLG+ +L +M R KG + L LR+ + + K +V+G+ +P +L+GAEVYG T QV++N+ RMV G T A+WR++G P+ A AA+R+ RA K L T
Sbjct: 228 QIELWAGRWEMEINPKKCGVMVFGGDQGEKVGVTTR----GGTIPEPDSYTYLGVELDRNLSRKTMSERRRKKGLECLFMLEKNLRSPSLSIGHKTLLVKGILMPTMLYGAEVYGSIGKTTSGAQVVVNKALRMVAGNGGALT----AVWRDLGVIPVQAAAASRQRRAWLKFPTLRT 397
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A1J5X0W1_9MICR (Uncharacterized protein (Fragment) n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5X0W1_9MICR) HSP 1 Score: 82.8 bits (203), Expect = 1.520e-16 Identity = 57/180 (31.67%), Postives = 89/180 (49.44%), Query Frame = 1
Query: 10 QVTEWTAENEMSVGKQKCGIMVVNKPLSMLHQTPARWQIAGQLVPI--VSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 543
QV W ++ EM + KCG+ LS + I Q PI + YTYLG+ T L +M R KG + L LR+ +P+ K ++RG+ +P + +GAE++G +T+ Q ++N +MV G N + A+ R++G P+ A+AA R+ RA K L T
Sbjct: 9 QVELWASKWEMEINPAKCGV------LSFGTSAEVKVGIVTQQGPIPDLESYTYLGVEITKTLSRMAMAERRRKKGLECLFMLEKKLRSPSLPIGHKTLLIRGIVMPTVTYGAEIFGSTGVVTKGSQGVINLAMKMVAGRN----CALTAVRRDLGILPVQAIAAERQKRAWGKFPYLKT 178
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A7S3PFX4_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFX4_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 3.310e-16 Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 205 MLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 543
M S + KG++ + PFL IP+ ++ ++ V + RLL+GAE+YGMNK++T Q LL++ +++ G++ VS + +W E G PPI A+AA+RRAR QK + L T
Sbjct: 1 MASACLKKGRQTQAAIRPFLGCLDIPLCIRRQILCSVMLSRLLYGAEIYGMNKSLTRHFQQLLDESLKIMLGVSPKMPVSKLVLWEEFGIPPIAALAASRRARVFQKAQNLRT 113
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A1J5WUS4_9MICR (Reverse transcriptase domain-containing protein n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WUS4_9MICR) HSP 1 Score: 84.7 bits (208), Expect = 8.130e-16 Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 1
Query: 10 QVTEWTAENEMSVGKQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 543
QV W EM + +KCG++ + I +P V YTYLG+ +L +++ +R KG+ V L LR+ + + K +V+G+ IP +L+GAEVYG T MQ ++N+ +MV G + A+ R++G PI A AA R+ RA K L T
Sbjct: 658 QVEMWARRWEMEINPKKCGVITFYGS----EEERVGIHIGEGPIPEVKSYTYLGVELDQNLTRKAVVEKRRKKGEECVFMLEKQLRSPSLTIGHKTLLVKGIVIPTMLYGAEVYGSTGEATRGMQTVVNKALKMVAGN----CCALTAVRRDLGMMPIQAAAAGRQERAWAKFPNLRT 827
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A1J5WVJ6_9MICR (Reverse transcriptase domain-containing protein n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WVJ6_9MICR) HSP 1 Score: 80.9 bits (198), Expect = 1.360e-14 Identity = 56/178 (31.46%), Postives = 85/178 (47.75%), Query Frame = 1
Query: 10 QVTEWTAENEMSVGKQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 543
Q+ W EM + +KCG+MV R G +P YTYLG+ +L +M R KG + L LR+ + + K +V+G+ +P +L+GAEVYG T QV++N+ RM+ G T A+ R++G P+ A AA+R+ RA K + T
Sbjct: 228 QIELWAGRWEMEINPKKCGVMVFGDDQGEKVGVTTR----GGTIPEPDSYTYLGVELDRNLSRKTMSERRRKKGLECLFMLEKNLRSPSLSIGHKTLLVKGILMPTVLYGAEVYGSIGKTTSGAQVVVNKAVRMIAGNGGALT----AVRRDLGVIPVQAAAASRQRRAWLKFPTVRT 397
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A1J5WSE6_9MICR (Uncharacterized protein (Fragment) n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WSE6_9MICR) HSP 1 Score: 70.9 bits (172), Expect = 9.080e-12 Identity = 51/170 (30.00%), Postives = 82/170 (48.24%), Query Frame = 1
Query: 40 MSVGKQKCGIMVVNKPLSMLHQTPARWQIAGQLVPI--VSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 543
M + KCG+ LS + + Q PI + YTYLG+ T L +M R KG + L LR+ +P+ K ++RG+ +P + +GAE++G +T+ Q ++N +MV G N + A+ R++ P+ A+AA R+ RA K L T
Sbjct: 1 MEINPAKCGV------LSFGSSAEVKVGVVTQQGPIPDLESYTYLGVEMTKTLSRMAMAERRRKKGLECLLMLEKKLRSPSLPIGHKTLLIRGIVMPTVTYGAEIFGSTGVVTKGSQGVINLAMKMVAGGN----CALTAVRRDLVILPVQAIAAERQKRAWGKFPYLKT 160 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1175.1.1 >prot_A-nodosum_M_contig1175.1.1 ID=prot_A-nodosum_M_contig1175.1.1|Name=mRNA_A-nodosum_M_contig1175.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=181bp MTRQVTEWTAENEMSVGKQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVback to top mRNA from alignment at A-nodosum_M_contig1175:14600..15142+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1175.1.1 ID=mRNA_A-nodosum_M_contig1175.1.1|Name=mRNA_A-nodosum_M_contig1175.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at A-nodosum_M_contig1175:14600..15142+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1175:14600..15142+ >mRNA_A-nodosum_M_contig1175.1.1 ID=mRNA_A-nodosum_M_contig1175.1.1|Name=mRNA_A-nodosum_M_contig1175.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=543bp|location=Sequence derived from alignment at A-nodosum_M_contig1175:14600..15142+ (Ascophyllum nodosum dioecious)back to top |