mRNA_A-nodosum_M_contig1008.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1008.4.1
Unique NamemRNA_A-nodosum_M_contig1008.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 497 bits (1279), Expect = 4.200e-171
Identity = 244/390 (62.56%), Postives = 292/390 (74.87%), Query Frame = 1
Query:    4 LDENDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEYESDETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAP-DVSLDGRPGENMFFDNTISNTETGVKIKEADNTVITDNTFVETSLLEFSDATGTQWLSNT 1170
            LD++ + + +P  ++ KWLLT+EL +  G++FYCRG+SIGGDCDELRIQSTGPTDFHEVR HGGS+YFE+T+VTSWDTPNK PQ  Y  GRSFLNCVSE  + E C GQ +N+ GECRMDII+SE+GYLG+FD+ESYGLTWKVRGFC D SNP+VFDTTNVYG++  SDIHH YYG YSYGHQGGVW NN+MHDNHQYGFDPHDDSDYLT                                GG  AAGIFLHRSSD   V+DNVV+DMQDAG+A+LES +ADI++N F++VK+GIR+SLG   N V++N+F+  S  GL+TY+GSD P D   DGRP +N+F +N I N   GVKIKE D+TVITDN F  TS LEF DA  T+W  NT
Sbjct:  111 LDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLTSIIASKRCNNVQIYNNEVYD------------GGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTSELEFFDAQNTRWKGNT 488          
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 489 bits (1259), Expect = 2.970e-163
Identity = 234/389 (60.15%), Postives = 278/389 (71.47%), Query Frame = 1
Query:    1 ILDENDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEYESDETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAPDVSLDGRPGENMFFDNTISNTETGVKIKEADNTVITDNTFVETSLLEFSDATGTQWLSN 1167
            +LD++   +  P+ +T  WLL +EL++  G +FYC+GTS GGDC++LRIQSTG  DFHEVRGHGGSLYFE+T+VTSWDTPNK PQE Y++GRSFLNCVSE  + + CEG  KN+ GECRMDII+SE+ YLG+FD+ESYG+TWKVRGFC D SNPEVF+ TNVYGD+  SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLTIA                              GGA AAGIFLHRSSD   V+DN + +MQDAG+A+LESFDA I+ N     KYGIR+SLG GNN VY N F   S+YGL+TY GSD PDVS DGRP  N+   N + +   GVKIKE D+     NTF+     EF ++T T W  N
Sbjct:  473 MLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVS-DGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPESTNTMWSGN 860          
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 472 bits (1214), Expect = 4.220e-162
Identity = 235/398 (59.05%), Postives = 280/398 (70.35%), Query Frame = 1
Query:    1 ILDENDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEYESDETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVR---------GFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAPDVSLDGRPGENMFFDNTISNTETGVKIKEADNTVITDNTFVETSLLEFSDATGTQWLSN 1167
            +LD +   + +PTSVT KWLL +EL+V  G+IFYC G+  GGDCDELRIQSTGP D++EVRGHGGS+YF +T+VTSWDTPNK PQE Y+ GRSFLNCVSE  + ETC+G  KND GECRMDII+SEMGY+G+FD+ESYGLTWKVR         GFC D SNP+VF+TTNVYGDIKNSDIHHMYYG YSYGHQGGVWTNN+MHDNHQY            +A                              GG  A GIFLHRSSD+ EVY N +++M DAG+A+LESF+ADIHDN    V++GIR+SLG G N VYDN F+ CS +GL+TY GSD PDVS +GRP  N F +N ++N+  GVK K +DN V+T+N F  T  LEF DA  T W  N
Sbjct:   46 MLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVS-NGRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTEELEFYDAQATTWSGN 430          
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 452 bits (1163), Expect = 1.240e-154
Identity = 225/390 (57.69%), Postives = 271/390 (69.49%), Query Frame = 1
Query:    1 ILDENDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEY-ESDETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAPDVSLDGRPGENMFFDNTISNTETGVKIKEADNTVITDNTFVETSLLEFSDATGTQWLSN 1167
            +LD ND +  + T+ TGKWLLT++LFV  G+  YCRG  +GG+C ELRI+ST  +DF E+RGHGG+LYFE+T+VTSWD   + PQE YKDGRSF+ CVSE    ++TC     N+ GECRMDIIDSEMGYLG+  +E+YG+TWKVRGFC D SNP+VFD  NVYGD+K SDIHHMYYGMYS+GHQGGVWTNN MHDNHQYGFDPHDDSDYL IA                              GGA AAGIFLHRS D  EVY N + +M DAG+A+LE+   DIHDN     ++GIR+ LG  NN V+DNVF      G+FTY GSD P V   GRP +N F++NTI  TETGVKIKE+DN  IT+N F  T+ +EF++A    W  N
Sbjct:   35 VLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVG-GGRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTTEIEFNNAIDIVWSGN 420          
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 416 bits (1070), Expect = 1.050e-141
Identity = 231/389 (59.38%), Postives = 263/389 (67.61%), Query Frame = 1
Query:    1 ILDENDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEYESDETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAPDVSLDGRPGENMFFDNTISNTETGVKIKEADNTVITDNTFVETSLLEFSDATGTQWLSN 1167
            +LD++ + + SPTSVT KWLL SEL+V  G+IFYC G+  GGDCDELRIQSTGP D++EVRGHGGS+YF +T+VTSWDTPNK PQE Y+ GRSFLNCVSE  + ETC+G+ KND GECRMDII+SEMGY+G+FDAESYGLTWKVRGFC D SNP+VF+TTNVYGDIKNS+IHHMYYGMYSYGHQGGVWTNN+MHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXX                 GG +A GIFLHRSSD+ EVY                                                        G       DAPDVS +GRP  N F +N I+NT  GVKIK +DN VI++N F  T  LEF DA  T W  N
Sbjct:    1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHRSSDNAEVYG-------------------------------------------------------GXXXXXXXDAPDVS-NGRPNGNTFNNNKITNTAGGVKIKNSDNIVISNNDFTGTEELEFFDAQATTWSDN 333          
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 411 bits (1057), Expect = 6.520e-140
Identity = 198/326 (60.74%), Postives = 234/326 (71.78%), Query Frame = 1
Query:    1 ILDENDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEYESDETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWK--------VRGFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSK 954
            +LD++   +  P+ +T  WLL +EL++  G +FYC+GTS GGDC++LRIQSTG  DFHEVRGHGGSLYFE+T+VTSWDTPNK PQE Y+ GRSFLNCVSE  + + CEG  KN+ GECRMDII+SE+ YLG+FD+ESYG+TWK        VRGFC D SNPEVFD TNVYGD+  SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLT                                GGA A GIFLHRSSD   V+DN + +MQDAG+A+LE+FDA I+ NT    KYGIR+SLG GNN+VY N F   S+
Sbjct:   22 MLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTRIIASKRCNNVKIFENEVRD------------GGAAAVGIFLHRSSDDAAVFDNTITNMQDAGIALLEAFDAQIYGNTINGAKYGIRMSLGSGNNVVYQNSFTDISQ 335          
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 394 bits (1011), Expect = 4.030e-129
Identity = 208/401 (51.87%), Postives = 265/401 (66.08%), Query Frame = 1
Query:    1 ILDENDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEYESDET--CEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFC-VDKS-----NPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAPDV-SLDGRPGENMFFDNTISNT--ETGVKIKEADNTVITDNTFVETSLLEFSDATGTQWLSNT 1170
            +LDEN+D++    + TG WLL   L V+ GS     GT+  GD D LR+ ST   DF EVRG+GG+L+F++T VTSWDT N   +E   DGRSF+NCV++++      C+G+   ++GECRMDII S MG +GWFDAESYGLTWKVRG C +D       N E+F+  NVYGDI NS+I+ MYYG YSYGHQGGVW +N M DN QYGFDPHDDSD LTI+                              GG  A GIFLHRSSD  EV+DNVVY+MQDAG+A++ES+DA+I+DN+FTN +YGIR+SLG G N++ +N+F   ++YGL+TY GSD PDV + +GRP +N+F  NTI       GV IKE D+ V  DN F   S  EF D++ T W+ NT
Sbjct:  216 VLDENNDVVGG--TPTGYWLLDRNLRVVDGSTLLVHGTAASGDADVLRLLSTSD-DFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWDGDGRSFINCVTQFDDSAIWDCDGRSNQEWGECRMDIISSTMGNMGWFDAESYGLTWKVRGACEIDPDTGVPYNHEIFEDHNVYGDILNSEIYGMYYGHYSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFEDSSDTTWVDNT 613          
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 389 bits (999), Expect = 7.550e-125
Identity = 206/396 (52.02%), Postives = 254/396 (64.14%), Query Frame = 1
Query:    1 ILDENDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEYESD--ETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAPDVSLD--GRPGENMFFDNTISNTETGVKIKEADNTVITDNTFVETSLLE---FSDATGTQWLSN 1167
            +LD ND+++    S TG WLL  ++ V  GS+    G   GGD   LRIQSTG  D++E+RGHGGSL F +T VTSWDT  K    +YK  RSF+ CVSE  +D  +TC+G   N  GECRMDII SEMG +G+  AESYG++WKVRG+C +  NPEVF+ T V GDI +SDI+ MYYG YS+GH GG+WT NKMHDN QYGFDPHDDSD L IA                              GG  A GIFLHRSSD CEV+ N VYDM+DAG+AI+ES  A IHDNTFTNVKYGIR+S+G   N+V +N F +C +YG++TY+G+D P+ S D  G   +N F  NT+   E GVKI++A+  V TDN F E S  E   F D     W +N
Sbjct:  428 VLDSNDNVVGG--SPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNN 818          
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 365 bits (937), Expect = 1.540e-119
Identity = 194/381 (50.92%), Postives = 236/381 (61.94%), Query Frame = 1
Query:   46 TGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEY--ESDETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAPDVSLDGRPGENMFFDNTISNTETGVKIKEADNTVITDNTF----VETSLLEFSDATGTQWLSNT 1170
            TG WLLT EL+V  G      GT  GGD DELR+ ST  T +  +R HGGSL F  T V SWDT    P ED  DGRS+++ VSE   + DETCEG  KN  GE RMDI +SE+GYLG+ D+ESYGLTWKVRGFC DKSNPE+FD  NVYG++ +SDIHH+ +G+Y+YGHQ G W  NKMHDN  YGFDPHDDSD+LTI                               G   +AGIFLHRSSD   V  N V+D  DAGLA+LESF+AD+ +NTF N KYG+R+S+G  +N+  +N+    SKY  +TY GSD PDV   GR   N+F  N+ S  E  +KIKEAD T   DN F     +  ++ F DA  +    NT
Sbjct:  104 TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSET-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNT 483          
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 1.920e-119
Identity = 192/373 (51.47%), Postives = 232/373 (62.20%), Query Frame = 1
Query:   37 TSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEY--ESDETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAPDVSLDGRPGENMFFDNTISNTETGVKIKEADNTVITDNTFVETSLLEFSDATG 1149
            TS TG WLLT EL+V  G      G+  GGD DELR+ ST  T F  +R HGGSL F +T V SWDT    P ED  DGRS+++ +SE   + DETCEG  KN  GE RMDI  SE+GYLG++D+ESYGLTWKVRGFC DKSNPEVFD  NVYG++ +SDIHHM +G+Y+YGHQ G W  NKMHDN  YGFDPHDDSD+LTI                               G   +AGIFLHRSSD   V  N V+D  DAGLA+LESF+AD+ +NTF N KYG+R S+G  +N+  +N     ++Y  ++Y G+D PDV   GR   N+F  N+ S  E  +KIKEAD T   DN F      E  DA G
Sbjct:   97 TSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVF------EVGDADG 462          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM4_ECTSI4.200e-17162.56Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D8LC73_ECTSI2.970e-16360.15Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5JGU8_9PHAE4.220e-16259.05MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FRR8_ECTSI1.240e-15457.69Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FIU4_ECTSI1.050e-14159.38Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KWQ2_9PHAE6.520e-14060.74MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G8D9_ECTSI4.030e-12951.87Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5JNF5_9PHAE7.550e-12552.02MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FXE4_ECTSI1.540e-11950.92Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI1.920e-11951.47Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1008contigA-nodosum_M_contig1008:144810..146961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LC73
PFAMsWSC
Model size1170
Max annot lvl2759|Eukaryota
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.43e-163
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Descriptionprotein xylosyltransferase activity
Cds size1146
COG categoryU
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1008.4.1prot_A-nodosum_M_contig1008.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1008 144810..146937 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866365.08716-CDS-A-nodosum_M_contig1008:144809..1448801680866365.08716-CDS-A-nodosum_M_contig1008:144809..144880Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1008 144810..144880 -
1680866365.0975475-CDS-A-nodosum_M_contig1008:145300..1454441680866365.0975475-CDS-A-nodosum_M_contig1008:145300..145444Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1008 145301..145444 -
1680866365.1105103-CDS-A-nodosum_M_contig1008:145649..1458141680866365.1105103-CDS-A-nodosum_M_contig1008:145649..145814Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1008 145650..145814 -
1680866365.120349-CDS-A-nodosum_M_contig1008:146042..1462801680866365.120349-CDS-A-nodosum_M_contig1008:146042..146280Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1008 146043..146280 -
1680866365.1323476-CDS-A-nodosum_M_contig1008:146409..1469371680866365.1323476-CDS-A-nodosum_M_contig1008:146409..146937Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1008 146410..146937 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866365.1425362-UTR-A-nodosum_M_contig1008:146937..1469611680866365.1425362-UTR-A-nodosum_M_contig1008:146937..146961Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1008 146938..146961 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1008.4.1

>prot_A-nodosum_M_contig1008.4.1 ID=prot_A-nodosum_M_contig1008.4.1|Name=mRNA_A-nodosum_M_contig1008.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=382bp
MYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFH
EVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEYESDETCE
GQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFCVDKSNPEVFD
TTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSD
YLTIANNEVYNNENHGIIASKRCNNVQIYENEIYNGGAQAAGIFLHRSSD
SCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMV
YDNVFDQCSKYGLFTYRGSDAPDVSLDGRPGENMFFDNTISNTETGVKIK
EADNTVITDNTFVETSLLEFSDATGTQWLSNT
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mRNA from alignment at A-nodosum_M_contig1008:144810..146961-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1008.4.1 ID=mRNA_A-nodosum_M_contig1008.4.1|Name=mRNA_A-nodosum_M_contig1008.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2152bp|location=Sequence derived from alignment at A-nodosum_M_contig1008:144810..146961- (Ascophyllum nodosum dioecious)
ATCCTCGACGAGAACGACGACATCATGTACAGCCCCACTAGCGTGACAGG CAAGTGGCTCCTCACGTCCGAGCTGTTCGTCCTCAGAGGATCCATCTTCT ACTGCCGCGGCACGAGCATAGGCGGCGACTGTGATGAGCTTCGAATCCAA TCAACCGGCCCCACGGACTTCCACGAGGTGCGCGGTCACGGTGGCAGCCT GTACTTCGAGAACACCCTCGTCACCTCGTGGGACACCCCGAACAAAGGCC CACAGGAAGATTACAAGGATGGTCGCTCGTTCCTTAACTGCGTGTCCGAG TATGAATCGGACGAGACGTGTGAGGGTCAGCCCAAGAATGATTTCGGGGA GTGCCGTATGGATATCATCGACTCTGAGATGGGCTACCTGGGATGGTTCG ACGCGGAGTCCTACGGTCTAACTTGGAAGGTCCGCGGGTTTTGCGTCGAC AAGAGCAACCCAGAGGTGTTCGATACAACGAACGTCTACGGTGATATCAA GAACTCCGACATTCACCACATGTACTACGGCATGTACTCCTACGGCCACC AGGTAAATATTGGAAGCTTCTTGGGCTTAGCGAGTGAGGCTATCGCGCTG ATATCACGTCAGTGTACGATGTCTCATGTTTGCCTGTGACGCCGCAATAT CGCGTTATCTTTCGCTTCTCGGGCGTGACAGGGCGGTGTGTGGACGAACA ACAAGATGCACGACAACCACCAGTACGGTTTCGACCCCCACGATGACTCG GACTACCTCACCATCGCCAACAACGAGGTCTACAACAACGAAAACCACGG CATCATTGCCTCCAAGCGCTGCAACAACGTCCAGATCTACGAAAATGAGA TCTACAACGGCGGTGCGCAGGCTGCGGGCATCTTCCTCCACCGCAGCTCC GACAGCTGCGAGGTCTATGGTGAGTGGGTCCAGAAGCTTGTTCCTCAACC TTCCGTTTCTCTCGCACAGGACCGCACTAGCAGTTATGTGCACCCCGATG GAGCCCCCACCATCTCACAATAGTCATGAATCAGATTACCAATGTTTGCA AGAATTTTCTTACGAATAAAAGTGTCGTTGACCTTCTCTTCTTTCCCAAA AAATTACCCCCATCCCCATCCCGATCAAAACATGCTTCGCCGGGCAGACA ACGTGGTCTACGATATGCAGGACGCAGGTCTGGCCATCCTAGAGTCTTTT GACGCTGACATCCACGACAACACCTTCACGAACGTCAAGTACGGGATCCG CATCAGCCTTGGAGGGGGGAACAACATGGTGTACGATAACGTGTTCGACC AGTGTTCAAAGTGTGAGTGAAGGCTACACGAAATTCGTGGTAGATCATTG CACTCTTTTGACTCTTGCCCTGTAGAACCGGCCGGGTCGGGCGGCAACGA AAAGTGTGAAAACGAGGGCCTTCACTCCTCAAACATGCAAAATATGCGCA AGTCCTGCCTGATGTCACGTTCCTTGCCGCTTTTTCCACATCTCGCGACG CTCGACACTCCCTGTAGACGGTCTGTTCACCTACCGGGGCTCCGACGCCC CCGATGTTTCTCTTGACGGCCGACCCGGCGAGAACATGTTCTTCGACAAC ACAATTTCTAACACTGAGACGGGCGTCAAGATCAAAGAAGCGGACAACAC CGTCATTACCGGTGAGACGATATCTATCTGGCGATCTGACGAGAAACGCG GAACAACATAAATCAGTGCCTGCCACGAATTTCGCTCTGCTCGTGAGCCT GTGCTTATACACCTTGTACTTGTACTGCGGGGTATGTCGAACATTTCGTT GTAGAAAGCGCGCGTCGCGAACGGACGTACGGAGGCGTTGGACGAGATTA GAGGCTTACGGCCGGATTCCTGGCTCGCGTGCGTGCTTTGTGCGGGTATC ACGTGCGTATATGACAAGAATCTGCATTCGCATTTGTTGACGATTAAGAG AAGCGCAACGATGATTTGAGTGTACACAGCTCCTTGGCACTGCGGTAAAC ATCCTCATCACATCCACTGTTTCCATCGCTGTGCCCTGAACGTGGATTTG GTGCTGCTTATGTCTCGCCCTGTCCGTGCAGATAACACGTTCGTGGAGAC CTCTCTTCTCGAGTTCAGCGACGCGACAGGCACGCAGTGGTTGAGCAACA CC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1008:144810..146961-

>mRNA_A-nodosum_M_contig1008.4.1 ID=mRNA_A-nodosum_M_contig1008.4.1|Name=mRNA_A-nodosum_M_contig1008.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at A-nodosum_M_contig1008:144810..146961- (Ascophyllum nodosum dioecious)
ATGTACAGCCCCACTAGCGTGACAGGCAAGTGGCTCCTCACGTCCGAGCT
GTTCGTCCTCAGAGGATCCATCTTCTACTGCCGCGGCACGAGCATAGGCG
GCGACTGTGATGAGCTTCGAATCCAATCAACCGGCCCCACGGACTTCCAC
GAGGTGCGCGGTCACGGTGGCAGCCTGTACTTCGAGAACACCCTCGTCAC
CTCGTGGGACACCCCGAACAAAGGCCCACAGGAAGATTACAAGGATGGTC
GCTCGTTCCTTAACTGCGTGTCCGAGTATGAATCGGACGAGACGTGTGAG
GGTCAGCCCAAGAATGATTTCGGGGAGTGCCGTATGGATATCATCGACTC
TGAGATGGGCTACCTGGGATGGTTCGACGCGGAGTCCTACGGTCTAACTT
GGAAGGTCCGCGGGTTTTGCGTCGACAAGAGCAACCCAGAGGTGTTCGAT
ACAACGAACGTCTACGGTGATATCAAGAACTCCGACATTCACCACATGTA
CTACGGCATGTACTCCTACGGCCACCAGGGCGGTGTGTGGACGAACAACA
AGATGCACGACAACCACCAGTACGGTTTCGACCCCCACGATGACTCGGAC
TACCTCACCATCGCCAACAACGAGGTCTACAACAACGAAAACCACGGCAT
CATTGCCTCCAAGCGCTGCAACAACGTCCAGATCTACGAAAATGAGATCT
ACAACGGCGGTGCGCAGGCTGCGGGCATCTTCCTCCACCGCAGCTCCGAC
AGCTGCGAGGTCTATGACAACGTGGTCTACGATATGCAGGACGCAGGTCT
GGCCATCCTAGAGTCTTTTGACGCTGACATCCACGACAACACCTTCACGA
ACGTCAAGTACGGGATCCGCATCAGCCTTGGAGGGGGGAACAACATGGTG
TACGATAACGTGTTCGACCAGTGTTCAAAGTACGGTCTGTTCACCTACCG
GGGCTCCGACGCCCCCGATGTTTCTCTTGACGGCCGACCCGGCGAGAACA
TGTTCTTCGACAACACAATTTCTAACACTGAGACGGGCGTCAAGATCAAA
GAAGCGGACAACACCGTCATTACCGATAACACGTTCGTGGAGACCTCTCT
TCTCGAGTTCAGCGACGCGACAGGCACGCAGTGGTTGAGCAACACC
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