mRNA_A-nodosum_M_contig1167.25.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1167.25.1
Unique NamemRNA_A-nodosum_M_contig1167.25.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1167.25.1 vs. uniprot
Match: D7G037_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G037_ECTSI)

HSP 1 Score: 716 bits (1848), Expect = 1.040e-245
Identity = 364/516 (70.54%), Postives = 426/516 (82.56%), Query Frame = 1
Query: 1084 ATRDMVWLDEDSGTVSSKLSQVDETYGRGFVAYLARFLLNYDEGCQEYFNGRLDLLVPQKDGSHVWEEFQGFVASVGLGLNRYEGSKGARLLCESLASKYATPEHEGAAEQLAVLFTLLPPDVQPVAAVKSLLSFPTARFPWSKSV-SSAEAASPDASSLMEKSPTELLPAAFRPRYDEATKAFYVPGIPQNLDGNSMELMFGAQGPYPTSKERGLTAVDFALFAACGAIGCTTTHLSVVPLDVVKTRLQTNPGSYEGLAQGVVTIAREEGWPMLLKGVGPTLMGYLWYGITVYPGYELFKRLFIDMMGPLNAALFRVPLVLAAGATATSFACIGVCPAEAVRIRQVADPSVGGVVSTTRQIVDESGWGKLYDGLPSILFRQISFGMMKFLVFDYFTEFXXXXXXXXXEKTFTQLLVSLTSGLVAGVCAAIVSQPADTVLSILNRDPGRATIPGTLKNIVEERGVRGLFLGLQSRIVWSGAIISGQFLLYDVCKTALHVSASDLRVFLDTISSAGL 2628
            A+  MVW++EDSGTVSS+LSQ DETYG+GFVAYLARFLLNYDEGC++YF G+LD  +P++DGSHVWEEF+GFVA+VGLGL+ ++GSKGAR L ESL+ KY   + +GA +QLA+LF+LLPPDVQPV  +KSLLSFPT      ++V SSA     D  S+  KSP+ LLP   RPRYDE   AF+VPG+P+       E+ FGA+GP+PTSKER LTA DFA+FAACGA+GCT+THL+V+PLDVVKTRLQT+PG Y GLA GV TIA+EEGW ML++G GPTL GYLWYGITVYPGYELFKRLF+ ++GPLNAALFRVPLVLAAGA AT  ACIGVCPAEAVRIRQVADP+VG + S  +QIV ESGWGKLY+GLPSILFRQISFGMMKFLVFD+FT+F         ++  TQL VSLTSGLVAGVCAAIVSQPADTVLS ++R P R +IP T++ IV+ERG  GLFLGL SRIVWSGAIISGQFLLYD+CKTALHVS  DLRVFLD ++SAGL
Sbjct:   94 ASERMVWVNEDSGTVSSRLSQADETYGQGFVAYLARFLLNYDEGCRDYFKGKLDCTLPKRDGSHVWEEFRGFVAAVGLGLHEFQGSKGARELLESLSRKY---DSDGAPQQLAMLFSLLPPDVQPVPDIKSLLSFPTGSASGFRAVRSSAFDKDLDFKSIFGKSPSALLPEELRPRYDEGVGAFFVPGVPRQA-----EMAFGARGPFPTSKERSLTAADFAVFAACGAVGCTSTHLTVIPLDVVKTRLQTDPGRYSGLAGGVTTIAKEEGWMMLMQGFGPTLAGYLWYGITVYPGYELFKRLFMQLVGPLNAALFRVPLVLAAGAAATCIACIGVCPAEAVRIRQVADPAVGSMPSAIKQIVAESGWGKLYEGLPSILFRQISFGMMKFLVFDFFTDFAYDLVPYLADQKSTQLAVSLTSGLVAGVCAAIVSQPADTVLSTMSRSPDRLSIPNTIRTIVDERGPGGLFLGLPSRIVWSGAIISGQFLLYDLCKTALHVSVDDLRVFLDVVASAGL 601          
BLAST of mRNA_A-nodosum_M_contig1167.25.1 vs. uniprot
Match: A0A6H5JRE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE0_9PHAE)

HSP 1 Score: 718 bits (1854), Expect = 6.610e-244
Identity = 365/516 (70.74%), Postives = 428/516 (82.95%), Query Frame = 1
Query: 1084 ATRDMVWLDEDSGTVSSKLSQVDETYGRGFVAYLARFLLNYDEGCQEYFNGRLDLLVPQKDGSHVWEEFQGFVASVGLGLNRYEGSKGARLLCESLASKYATPEHEGAAEQLAVLFTLLPPDVQPVAAVKSLLSFPTARFPWSKSVSSAEAASP-DASSLMEKSPTELLPAAFRPRYDEATKAFYVPGIPQNLDGNSMELMFGAQGPYPTSKERGLTAVDFALFAACGAIGCTTTHLSVVPLDVVKTRLQTNPGSYEGLAQGVVTIAREEGWPMLLKGVGPTLMGYLWYGITVYPGYELFKRLFIDMMGPLNAALFRVPLVLAAGATATSFACIGVCPAEAVRIRQVADPSVGGVVSTTRQIVDESGWGKLYDGLPSILFRQISFGMMKFLVFDYFTEFXXXXXXXXXEKTFTQLLVSLTSGLVAGVCAAIVSQPADTVLSILNRDPGRATIPGTLKNIVEERGVRGLFLGLQSRIVWSGAIISGQFLLYDVCKTALHVSASDLRVFLDTISSAGL 2628
            A+  MVW++EDSGTVSS+LSQ DETYG+GFVAYLARFLLNYDEGC+EYF G+LD  +P++DGSHVWEEF+GFVA+VGLGL+ ++GSKGAR L ESL+ KY +   +GA +QLA+LF+LLPPD+QPV  +KSLLSFPT      ++V S++     D  S+  KSP+ LLP   RPRYDE   AF+VPG+P+       E+ FGA+GP+PTSKER LTAVDFA+FAACGA+GCT+THLSV+PLDVVKTRLQT+PG Y GLA GV TIA+EEGW ML++G GPTL GYLWYGITVYPGYELFKRLF+ ++GPLNAALFRVPLVLAAGA ATS ACIGVCPAEAVRIRQVADP+VG + S  +QIV ESGWGKLY+GLPSILFRQISFGMMKFLVFD+FT+F         ++  TQL VSLTSGLVAGVCAAIVSQPADTVLS ++R P R +IP T++ IV+ERG  GLFLGL SRIVWSGAIISGQFLLYD+CKTALHVS  DLRVFLD ++SAGL
Sbjct:  273 ASERMVWVNEDSGTVSSRLSQTDETYGQGFVAYLARFLLNYDEGCREYFKGKLDCTLPRRDGSHVWEEFRGFVAAVGLGLHEFQGSKGARELLESLSRKYVS---DGAPQQLAMLFSLLPPDIQPVPDIKSLLSFPTEGASGFRAVRSSDFDKDLDFKSIFGKSPSALLPEELRPRYDEGVGAFFVPGVPRQA-----EMAFGARGPFPTSKERILTAVDFAVFAACGAVGCTSTHLSVIPLDVVKTRLQTDPGRYSGLAGGVTTIAKEEGWMMLMQGFGPTLAGYLWYGITVYPGYELFKRLFMQLVGPLNAALFRVPLVLAAGAAATSIACIGVCPAEAVRIRQVADPAVGSMPSAIKQIVAESGWGKLYEGLPSILFRQISFGMMKFLVFDFFTDFAYDLVPYLADQKSTQLAVSLTSGLVAGVCAAIVSQPADTVLSTMSRSPDRLSIPNTIRTIVDERGPGGLFLGLPSRIVWSGAIISGQFLLYDLCKTALHVSVDDLRVFLDVVASAGL 780          
BLAST of mRNA_A-nodosum_M_contig1167.25.1 vs. uniprot
Match: A0A0G4EWL2_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EWL2_VITBC)

HSP 1 Score: 374 bits (959), Expect = 6.680e-112
Identity = 231/544 (42.46%), Postives = 309/544 (56.80%), Query Frame = 1
Query: 1075 PSTATRDMVWLDE-DSGTVSSKLSQVDETYGRGFVAYLARFLLNYDEGCQEYFNGRLDLLVPQKDGSH----VWEEFQGFVASVGLGLNRYEGSKGARLLCESLASKYATPEHEGAAEQLAVLFTLLPPDVQPVAAVKSLLSFPTARFPWSKSVSSAEAASPDASSLMEKS------PTELLPAAFRPRYDEATKAFYVPGI---PQ-------------NLDGNSMELMFGAQGPYPTSKERGLTAVDFALFAACGAIGCTTTHLSVVPLDVVKTRLQTNPGSYE--GLAQGVVTIAREEGWPMLLKGVGPTLMGYLWYGITVYPGYELFKRLFIDMMGPLNAALFRVPLVLAAGATATSFACIGVCPAEAVRIRQVADPS-VGGVVSTTRQIVDESGWGKLYDGLPSILFRQISFGMMKFLVFDYFTEFXXXXXXXXXEKTFTQLLVSLTSGLVAGVCAAIVSQPADTVLSILNRDPGRATIPGTLKNIVEERGVRGLFLGLQSRIVWSGAIISGQFLLYDVCKTALHVSASDLRVFLDTIS 2616
            P   +  M W    DS   +  L    +TY   FV Y+ARFLLNYD+ C  ++  +        D S     + + F  F +SV  GL RY G  G   L   +  +Y   +   +  QLA+LF+LL    QP+ A+  L      R  ++ S S A   SP  +S+ E+       P  LLP    P +D   + + V G+   P+             NLD   + L FG +GP+P ++E+ L    +ALFA  GA  C+ TH +V+PLDVVKT+ QT+P  ++  GL QG +T+ +EEGW MLL+G   T++GYLWYGITVYPGYE FKRLF  + GP  A  FRVPLVL AGA AT FA +GVCP EAVRIR VADP+   G +   +++  E G  KLYDG   +L RQ+ FGMMKF VFD F EF         + T   L VS  SGLVAGV ++IVSQPADT+LS +N+  GR +    +++I ++ G +G F GL SR VW+G+II+GQF LYDV K +  V   DL +F+D +S
Sbjct:  189 PELTSEGMTWRKVFDSVKGADVLYVASDTYSPSFVTYMARFLLNYDDTCAAWWRQQRLTTQAVADPSERTRILLKSFGEFSSSVEYGLRRYRGQAGVNNLLNVMIRRYGNRQIPESRRQLALLFSLLS-QYQPINAITVLSRALPTRPTFAFSPSPAGIPSPVFASMKEEEGFFLSDPVALLPGGVNPIFDLELQRYRVSGLLADPKMLLSYQLRRDGSVNLDQPVLTL-FGPRGPFPVTREKPLDWSTYALFATAGAFACSATHAAVIPLDVVKTKRQTDPERFDSMGLMQGAITLGKEEGWRMLLQGAQATILGYLWYGITVYPGYEFFKRLFASLAGPAGAIEFRVPLVLMAGAVATVFAAVGVCPCEAVRIRMVADPNYASGFLPAVQRLTREDGLLKLYDGFWPLLIRQVVFGMMKFFVFDSFAEFLFDVFPALDDTTAMSLSVSAFSGLVAGVASSIVSQPADTILSRINQRGGRESAFEVVRDIFDKWGPQGFFFGLGSRCVWAGSIIAGQFFLYDVLKASFGVRNEDLMLFMDVLS 730          
BLAST of mRNA_A-nodosum_M_contig1167.25.1 vs. uniprot
Match: A0A6V2T953_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2T953_HETAK)

HSP 1 Score: 364 bits (934), Expect = 9.730e-110
Identity = 230/501 (45.91%), Postives = 290/501 (57.88%), Query Frame = 1
Query: 1144 QVDETYGRGFVAYLARFLLNYDEGCQEYFNGRLDLLVPQKDGSHVWEE----FQGFVASVGLGLNRYEGSKGARLLCESLASKYATPEHEGAAEQLAVLFTLLPPDVQPVAAVKSLLSFPTARFPWSKSVSSAEAASPDASSLMEKSPTELLPAAFRP---RYDEATKAFYVPGIPQNLDGNSMELMFGAQGPYPTSKERGLTAVDFALFAACGAIGCTTTHLSVVPLDVVKTRLQTNPGSYEGLAQGVVTIAREEGWPMLLKGVGPTLMGYLWYGITVYPGYELFKRLFIDMMGPLNAALFRVPLVLAAGATATSFACIGVCPAEAVRIRQVADPSVG-GVVSTTRQIVDESGWGKLYDGLPSILFRQISFGMMKFLVFDYFTEFXXXXXXXXXEKTFTQLLVSLTSGLVAGVCAAIVSQPADTVLSILNRDPGRATIPGTLKNIVEERGVRGLFLGLQSRIVWSGAIISGQFLLYDVCKTALHVSASDLRVFLDTISSA 2622
            ++D  Y   F  YL+RFLLNYD   +E++  R  +L    +      +    F  F +S+  GL  +   +G   L   LA KYAT  ++ A   L+ + + +    QP   +K LL    +  P  ++  S  + SP     ++  P  L P        RY  A  +F VPG P  L      L        P ++E  L A  +ALFAA GA GCT THL+VVPLDVVKTRLQT PG Y  LA GV TI REEG  MLL+G  PT++GYLWYG+TVYPGYE FKRL++ + GP   A +  PLVLAAGA+AT FAC+GVCPAEAVRIR VADP       +  R+IV E G G+LY G   +L RQ+ FGMMKF VFD F +          +   T L VSL SGLVAGV + +VSQPADTVLS +N+  G  +IP  +  I  ERG  G FLGL SR  WSGA+ISGQFLLYD+ K  L V+  DL + LD ++SA
Sbjct:  117 EIDLLYPPAFREYLSRFLLNYDSSFKEWWESRAAMLPEDLEAEQAARQEMNNFGAFQSSIFYGLQEFCIEEGPEKLGALLAVKYAT--NQDAIMHLSQVLSFINGANQPSGTIKDLLDRQKSAPP--RTAQSRGSTSP----FLQLLPPTLAPVLLEQEGGRY--AAPSFAVPGAPAALP---WALXXXXXXAAPPAREAALDAKVYALFAAGGAFGCTLTHLAVVPLDVVKTRLQTAPGRYANLADGVRTIYREEGGAMLLQGAAPTMVGYLWYGLTVYPGYEFFKRLYVALAGPAGDAAYHTPLVLAAGASATFFACLGVCPAEAVRIRAVADPGFAPSGAAALRRIVAEEGPGQLYAGFRPLLVRQVVFGMMKFFVFDSFADAVFAAYPELAQGAATALGVSLLSGLVAGVASCVVSQPADTVLSTINKQEG-TSIPQAVAQIWGERGPGGFFLGLGSRCAWSGAVISGQFLLYDLAKQVLGVAPPDLTLNLDALASA 603          
BLAST of mRNA_A-nodosum_M_contig1167.25.1 vs. uniprot
Match: A0A812TI72_SYMPI (McfN protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812TI72_SYMPI)

HSP 1 Score: 357 bits (916), Expect = 2.070e-108
Identity = 235/509 (46.17%), Postives = 299/509 (58.74%), Query Frame = 1
Query: 1171 FVAYLARFLLNYDEGCQEYFNGR--------LDLLVPQ-----KDGSHVWEEFQGFVASVGLGLNRYE--GSKGARLLCESLASKYATPEHEGAAEQLAVLFTLLPPDVQPVAAVKSLLSFPTARFPWSKSVSSAEAA--SPDASSLMEKSPTELLPAAFRPRYDEATKAFYVPGIPQNL-------DGNSMEL-MFGAQGPYPTSKERGLTAVDFALFAACGAIGCTTTHLSVVPLDVVKTRLQTNPGSYEG---LAQGVVTIAREEGWPMLLKGVGPTLMGYLWYGITVYPGYELFKRLFIDMMGPLNAALFRVPLVLAAGATATSFACIGVCPAEAVRIRQVADPSVGGV--VSTTRQIVDESGWGKLYDGLPSILFRQISFGMMKFLVFDYFTEFXXXXXXXXXEKTFTQLLVSLTSGLVAGVCAAIVSQPADTVLSILNRDPGRATIPGTLKNIVEERGVRGLFLGLQSRIVWSGAIISGQFLLYDVCKTALHVSASDLRVFLD 2607
            FV YLAR LLNYDE    ++           LD   P+     K  + + E F  + ASV LGL RY+  G   + LL   LA +Y + E +    QLA+ F LL  + QP   +  LLS        S  + +   A  SP     +   PT LLP    P ++     + +PG+           D   +EL +FGA+GP    KER LT  D+ LFAA GA GC+ TH  V+PLDVVKTRLQ  P  +E    L  G + I+REEG   LL G  PTL+GYLWYG+TVYPGYE FKR++++ + P+     RV L+L AGATAT FACIGVCPAEA RIR VADP + G+      ++I +E G G L+DGL ++L RQ+ FGMMKFLVFDYF +F         EKT TQLLVS  SG VAG+ ++IVSQPADTVL+ +N+  GRA    T + I  E+G++G F GL SR VW+  IISGQF LYDVCK+ L V   DLR+FL+
Sbjct:   19 FVVYLARILLNYDEASSAWWQAEVVPTVEATLDRSAPEPLRRAKRAAKLREVFADYTASVELGLRRYQDQGRSPSNLL-RRLADRYGSTEEQR--RQLALCFCLL--EDQPRELLSELLS--------SLGLETRLQAVFSPALPDYLAMDPTRLLPDTQYPVWNGGLNRWVIPGLQAAQPYTSAFDDTKGVELSIFGARGPEAVVKERPLTGWDYLLFAASGAFGCSVTHSLVIPLDVVKTRLQAEPKRFEAAGDLVSGAMLISREEGASSLLAGWEPTLLGYLWYGVTVYPGYEFFKRVYLNAV-PIED--LRVFLILLAGATATVFACIGVCPAEACRIRMVADPQLKGLGLPKVLQRISEEDGLGTLFDGLSTLLVRQVLFGMMKFLVFDYFADFVFDLAPSLAEKTETQLLVSFISGAVAGITSSIVSQPADTVLTRMNQKQGRAFFLETGQEIYSEQGIQGFFAGLGSRSVWAACIISGQFFLYDVCKSFLGVK--DLRMFLN 509          
BLAST of mRNA_A-nodosum_M_contig1167.25.1 vs. uniprot
Match: A0A7S4P916_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4P916_GUITH)

HSP 1 Score: 329 bits (843), Expect = 3.360e-94
Identity = 208/505 (41.19%), Postives = 288/505 (57.03%), Query Frame = 1
Query: 1144 QVDETYGRGFVAYLARFLLNYDEGCQEYFNGRLDLLVP----QKDGSHVWEEFQGFVASVGLGLNRYEGSKGARLLCESLASKYATPEHEGAAEQLAVLFTLLPPDVQPVAAVKSLLSFPTARFPWSKSVSSAEAASPDASSLMEKSPTELLPAAFRPRYDEATKAFYVPGIPQNLDGN-SMEL----MFGAQGPYPTSKERGLTAVDFALFAACGAIGCTTTHLSVVPLDVVKTRLQTNP--GSYEGLAQGVVTIAREEGWPMLLKGVGPTLMGYLWYGITVYPGYELFKRLFIDMMGPLNAALFRVPLVLAAGATATSFACIGVCPAEAVRIRQVADPSVG-GVVSTTRQIVDESGWGK-LYDGLPSILFRQISFGMMKFLVFDYFTEFXXXXXXXXXEKTFTQLLVSLTSGLVAGVCAAIVSQPADTVLSILNRDPGRATIPGTLKNIVEERGVRGLFLGLQSRIVWSGAIISGQFLLYDVCKTALHVSASDLRVFLDTISS 2619
            + +ETY   F+ YLARF+LNYD   QE+++ R   L P    Q+    + +E + F  SV  GL RY G +G + L   L   Y    +E    QL   F LL P +QP   +  +L+        SK V  A       S     +   ++ +  RP  +       VP +  ++  + + EL    +FG +   P  +ER L    +A  A  G   C+  H   VP+DVVKTR+Q+    G Y+GL QG+ T+ +EEG   L++G  PT++GY WYG+TVYPGYE+FKR+FI M G  N A++ VPLVLAAGA +T+ AC+GVCPAE  RIR V++PS G G ++   +I+ E G+ + LY+G   +L RQ+ FGM+KF VFD F            E+  TQLLVSL +GLVAGV ++IVSQPAD+VL+ + +D         + +I    G RG F GL SR VW+GAII+GQFLLY+VCK    ++A DL +FLD I S
Sbjct:  353 KAEETYSVSFINYLARFVLNYDSRWQEWWSIRQRALRPDFNEQQVAEQLGKELRRFSGSVEYGLGRYSGEEGVKRLFAELQLHYGDMGYE-VNRQLVSAFALLEPSLQPKEEMADVLA--------SKYVRKASEFPSSRSDEFRNNVKAVMESPLRPWGNPPLIPDDVPLLRHDVGFSLAFELPDPFLFGDKPLAPVKRERVLEPGIYAASAISGLFCCSIMHAITVPVDVVKTRMQSPSFKGKYKGLRQGLQTLKKEEGMKGLMRGAWPTVVGYSWYGLTVYPGYEMFKRMFIAMAGEANDAMYHVPLVLAAGAASTAVACLGVCPAEVTRIRMVSNPSYGSGALAVAGRIIKEEGFFRGLYEGFSFLLTRQVLFGMVKFFVFDTFASTIYSFFPVLGEQAITQLLVSLVAGLVAGVSSSIVSQPADSVLTRM-KDNSSVDAATVVLDIWRNMGPRGFFAGLGSRCVWAGAIIAGQFLLYEVCKNIFQITADDLALFLDVIGS 847          
BLAST of mRNA_A-nodosum_M_contig1167.25.1 vs. uniprot
Match: A0A7S0CU64_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CU64_9EUKA)

HSP 1 Score: 322 bits (826), Expect = 1.610e-93
Identity = 213/542 (39.30%), Postives = 297/542 (54.80%), Query Frame = 1
Query: 1099 VW--LDEDSGTVSSKLSQVDETYGRGFVAYLARFLLNYDEGCQE-YFNGR-----LDLLVPQKDGSHVWEEFQGFVASVGLGLNRYEGSKGARLLCESLASKYATPEHEGAAEQLAVLFTLLPPDVQPVAAVKSLLS-FPTARFPWSKSVSSAEAASPDASSLMEKSPTEL-LPAA--------FRPRYDEATKAFYVPG---IPQNLDGNSM---ELM-----FGAQGPY-----PTSKERGLTAVDFALFAACGAIGCTTTHLSVVPLDVVKTRLQTNPGSYEGLAQGVVTIAREEGWPMLLKGVGPTLMGYLWYGITVYPGYELFKRLFIDMMGPLNAALFRVPLVLAAGATATSFACIGVCPAEAVRIRQVADPSVG-GVVSTTRQIVDESGWGKLYDGLPSILFRQISFGMMKFLVFDYFTEFXXXXXXXXXEKTFTQLLVSLTSGLVAGVCAAIVSQPADTVLSILNRDPGRATIPGTLKNIVEERGVRGLFLGLQSRIVWSGAIISGQFLLYDVCKTALHVSASDLRVFLDTISS 2619
            VW  LDE +   S+ + + +E Y   F  YLARFL++++E     Y+  R     L+ + P +    + +    +  S+  GL+RY   KG   L   L   Y T     A +QL ++FTLL  D QP   V  +LS F   R P+     +  A + D       +   L +P A        +  R  +      +P    + Q  DG      +L+     F  Q P      P S+ER L  + + +FA  G +GC+ TH  +VP+DVVKTRLQTNP  Y  LA G   I REEG+  LL G GPT++GY WYG+TVYPGYEL KR+ I + G +N   + VPLVL AGA AT  ACIGVCPAEA RIR VA P        T R+I  E G G L++G+  +  RQ+ FGMMKF +FD F +          ++  TQL VSL +G VAG+ A++VSQPADTVLS + ++ G  + P  ++N++ E G++GLF+GL SR +W+  II+GQF LYD+ K +  V++ DL +F D +S+
Sbjct:  133 VWRRLDE-TVKYSTSVEKAEEIYNPIFTTYLARFLIHFEETRGTGYWRDRQSTIDLEKINPDEVNEVMHKALSEYTVSLQYGLSRYVDPKGPARLLRRLIRIYGTSPK--ARKQLGIMFTLLG-DYQPRVFVAEVLSEFKNLRAPYEGVPKAGVALAADGKVTNPYTLVSLDMPEADILGEDGDYEERLTKENLPLLLPHWTKVKQRPDGTFFVPADLLPTTRRFLIQAPSFKTTSPISRERSLNGIIYGMFALAGMVGCSATHSVLVPIDVVKTRLQTNPDLYANLADGAKRIFREEGFRGLLLGSGPTIVGYSWYGLTVYPGYELLKRVLISLAGEINGERYHVPLVLLAGALATVVACIGVCPAEAARIRIVAQPDYAPSFAGTVRRIAKEEGVGSLFEGIGPLAIRQVLFGMMKFFIFDSFADQIFRVFPSLADRVSTQLFVSLLAGAVAGLAASVVSQPADTVLSKMKQEEG-ISAPEAIENLIREFGLQGLFIGLPSRCLWATPIIAGQFFLYDLFKNSFQVASDDLNLFFDVLST 669          
BLAST of mRNA_A-nodosum_M_contig1167.25.1 vs. uniprot
Match: A0A8J5XS99_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XS99_DIALT)

HSP 1 Score: 316 bits (810), Expect = 1.300e-91
Identity = 212/529 (40.08%), Postives = 272/529 (51.42%), Query Frame = 1
Query: 1102 WLDEDSGTVSSKLSQVDETYGRGFVAYLARFLLNYDEGCQEYFNGRLD----LLVPQKDGSHVWEEFQGFVASVGLGLNRYEGSKGARLLCESLASKY-ATPEHEGAAEQLAVLFTLLPPDVQPVAAVKSLLS------FPTARFPWSKSVSSAEAASPDASSLMEKSPTELLPAAFRPRYDEATKAFYVPGIPQNL-------------DGNSMELMFGAQGPYPTSKERGLTAVDFALFAACGAIGCTTTHLSVVPLDVVKTRLQTNPGSYEGLAQGVVTIAREEGWPMLLKGVGPTLMGYLWYGITVYPGYELFKRLFIDMMGPLNAALFRVPLVLAAGATATSFACIGVCPAEAVRIRQVADPSVG-GVVSTTRQIVDESGWGKLYDGLPSILFRQISFGMMKFLVFDYFTEFXXXXXXXXXEKTFTQLLVSLTSGLVAGVCAAIVSQPADTVLSILNRDPGRATIPGTLKNIVEERG--VRGLFLGLQSRIVWSGAIISGQFLLYDVCKTALHVSASDLRVFLD 2607
            W+DE       + + V  T+   FV YLARFLLNYD   + +++GR+      L P+   S     F  F ASV  GL RY G+ G   L ++L   + A PE       LA+ FT L    QP   +  LL        P+ RF            SP     +   P  LLP    P +D   + + V G+                 DG+ +  +FG +  +   +ER LT  D+ALFA  GA GC  TH +V PLDVVKTR+QT+PG Y GLA G   I  +EGW ML  G+  TL+GY WYG+TVYPGYE F RLF    G   A +    +V+ +GA AT  AC+GVCP EA RIR VA P    G+ S  ++I  E G   LY G   I+ RQ+ FGM+KF  FD  T+              +QLLVS  +GL AGV +A VSQPAD +LS LNR  GR  +     ++    G      F GL SR VWSG+IISGQF +YD  K  L +S+ DL +FLD
Sbjct:  121 WVDE--SVDPQQFADVLRTFNLPFVTYLARFLLNYDPTSRAWWDGRVAEIERRLSPELVRSARLALFAEFAASVQYGLRRYAGAGGVSALFDTLVRAHGAFPERR---RHLALAFTFLEA-AQPREQIAGLLRAGDGAPLPSPRF-------GTAPFSPGLPEYLSIDPRFLLPPTQVPVWDANLRRYVVRGLDDVKQYGQYAQEGYAADDGSVLLSVFGPRAQFAVQRERALTPSDYALFALSGAAGCCATHAAVTPLDVVKTRMQTSPGRYSGLADGARAIVADEGWAMLFVGLQATLVGYAWYGMTVYPGYEFFSRLFEAAAGAAAAGV-HAQIVILSGACATVLACVGVCPMEAARIRAVAQPDYAPGLFSMLQRITAEDGVASLYKGFAPIVLRQVIFGMVKFYTFDSLTDALFAAAPALKATVGSQLLVSFLAGLAAGVASACVSQPADALLSELNRQGGRGDVRAAAASLWRAGGGTPSRFFAGLLSRCVWSGSIISGQFFIYDFVKGLLAISSDDLLLFLD 635          
BLAST of mRNA_A-nodosum_M_contig1167.25.1 vs. uniprot
Match: A0A1Q9DSD4_SYMMI (Mitochondrial substrate carrier family protein N n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DSD4_SYMMI)

HSP 1 Score: 324 bits (830), Expect = 1.450e-91
Identity = 241/585 (41.20%), Postives = 314/585 (53.68%), Query Frame = 1
Query:  991 VRALVIAGAASSAV-SMLDPPSAADAYSPPSTATRDMVWLDEDSGTVSSKLSQ---VDETYGRGFVAYLARFLLNYDEGCQEYFNGRL-------------DLLVPQKDGSHVWEEFQGFVASVGLGLNRY--EGSKGARLLCESLASKY-ATPEHEGAAEQLAVLFTLLPPDVQPVAAVKSLLSFPTARFPWSKSVSSAEAA--SPDASSLMEKSPTELLPAAFRPRYDEATKAFYVPGIP---------QNLDGNSMELMFGAQGPYPTSKERGLTAVDFALFAACGAIGCTTTHLSVVPLDVVKTRLQTNPGSY--------EGLAQGVVTIAREEGWPMLLKGVGPTLMGYLWYGITVYPGYELFKRLFIDMMGPLNAALFRVPLVLAAGATATSFACIGVCPAEAVRIRQVAD------PSVGGVVSTTRQIVDESGWGKLYDGLPSILFRQISFGMMKFLVFDYFTEFXXXXXXXXXEKTFTQLLVSLTSGLVAGVCAAIVSQPADTVLSILNRDPG-RATIPGTLKNIVEERGVRGLFLGLQSRIVWSGAIISGQFLLYDVCKTALHVSASDLRVFLD 2607
            +RAL   GA + AV   L PP AA   S        + WL  D     +++ +    D  +   F+ YLAR LLNYDE    ++   +             + L   K  + + + F  F ASV +GL RY  EG + + LL + L  +Y +TPE      QLA+ F LL  + QP+  +  LL+        S  + +   A  SP     +   P+ LLP    P +D     + +PG+            +D  +   +FG +G     KER LT  D+ LFA  GA+GC+ TH  V+PLDVVKTRLQ    +         EGL    + I R EG   LL G  PT++GYLWYG+TVYPGYE FKRL++ +  P+     +V LVL AGATAT FACIGVCPAEA RIRQV        P V  V+S      +  G G L+DG  ++L RQ+ FGMMKFLVFDYF +F          +T TQLLVSL SG VAG+ A+IVSQPADT+L+ +N+  G RA    T K I EE+G++G F GL SR VW+  IISGQF LYDVCK  L V   DLR+FL+
Sbjct:  164 LRALARRGAVTVAVLGALGPPCAARGKS--------LSWLPMDEAPQQAEIFERIEADAEWSVDFIVYLARILLNYDEASATWWKDEVVPAVEATLDRSASESLRKTKRAAKLRDVFADFTASVEVGLRRYQEEGRRKSGLL-KRLVDRYGSTPERR---RQLALAFCLL--EDQPLELLSELLA--------SLGLDTRLQAVFSPALPDYLAMDPSRLLPDTQYPVWDGGRNRWVIPGLQAAQPYRSAFDEIDRGAALSVFGVRGAEVVVKERPLTLNDYRLFALSGALGCSVTHSLVIPLDVVKTRLQAAKSAKASEASDEEEGLLSFALRIQRTEGAGALLAGWEPTVLGYLWYGVTVYPGYEFFKRLYVSLC-PIED--LKVFLVLLAGATATIFACIGVCPAEACRIRQVCGEERRSLPEVLDVISA-----EAGGLGTLFDGFQTLLIRQVLFGMMKFLVFDYFADFVFDLFPFLANQTETQLLVSLLSGAVAGLTASIVSQPADTILTRMNQTTGGRAFFFDTGKEIWEEQGLQGFFAGLGSRSVWAACIISGQFFLYDVCKAFLGVK--DLRMFLN 716          
BLAST of mRNA_A-nodosum_M_contig1167.25.1 vs. uniprot
Match: W7U2M4_9STRA (Mitochondrial phosphate carrier protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2M4_9STRA)

HSP 1 Score: 311 bits (797), Expect = 1.070e-89
Identity = 222/555 (40.00%), Postives = 296/555 (53.33%), Query Frame = 1
Query: 1078 STATRDMVW-----LDEDSGTVSSK-LSQVDE-TYGRGFVAYLARFLLNYDEGCQEYFNGRLDLLVPQK--DGSHVWEEFQ-------GFVASVGLGLNRYEGSKGARLLCESLASKYATPEHEG----------AAEQLAVLFTLLPPDVQPVAAVKSLL-SFP----TARFPWSKSVSSAEAASPDASSL--MEKSPTELLPAAFRPRYDEATK-AFYVPG------------IPQNLDGNSMELM---------FGAQGPYPTSKERGLTAVDFALFAACGAIGCTTTHLSVVPLDVVKTRLQTNPGSYEGLAQGVVTIAREEGWPMLLKGVGPTLMGYLWYGITVYPGYELFKRLFIDMMGPLNAALFRVPLVLAAGATATSFACIGVCPAEAVRIRQVADPSVGGVVST-TRQIVDESGWGKLYDGLPSILFRQISFGMMKFLVFDYFTEFXXXXXXXXXEKTFTQLLVSLTSGLVAGVCAAIVSQPADTVLSILNRDPGRATIPGTLKNIVEERGVRGLFLGLQSRIVWSGAIISGQFLLYDVCKTALH 2574
            S  +R  VW     L E+ G +S   LS   +  +   FV YLARFLLN+D     +++  +   VP     GS   + F             +GLG    +G +G    C+ L  +Y  PE E             EQLA+LF+LLPP  QP A +  LL S P    T+R    +S+ + ++      ++  M + P  LLPA     +    + A+Y  G              ++++G ++            FG     P  KER L    + LFA  GA+GC  TH  VVP+DVVKTR QT+ G    + +GV T+AREEG   L +G+ PTL+GYL+YG+TVYPGYE FKR     +GP  A  F  PLV+ AGA AT  AC+GVCPAEA+RIR VA+  V     T T  +  E G   L+DG P +L RQ+ FGMMKFLVFD              E   + L VSL SG VAGV +AIVSQPADT+LS +N +  R ++   + +I+ ERGV+GLF+GL +R +WSG+IISGQFLLYDV +  LH
Sbjct:   50 SVGSRSFVWKQPSTLKEEGGGLSGPGLSLTPQGLFPLAFVTYLARFLLNFDSSVSSWWDSEVVPAVPSSYSKGSSARQRFLMSRFGELSTTVELGLGPFASKGKEGVLTFCQRLVDRYIGPESEAYPRGTPEGRRIREQLALLFSLLPPTAQPTALINELLASLPPPSGTSRIFQVESLGAGQSKVLMDQTVRGMGQDPLMLLPARNMVPFASVLEGAYYGKGSGDXXXXXXXXXXXEHVEGANVAPFPSSAIPISPFGPIAARPIMKERSLDLNTYLLFALAGAVGCAGTHSLVVPIDVVKTRAQTSGGG-TSILEGVQTLAREEGLAGLTRGIEPTLLGYLFYGVTVYPGYEFFKRALNSAVGPAAATQFHAPLVILAGALATVIACLGVCPAEALRIRMVAN--VESFQDTLTGAVEQEGGIPSLWDGFPPLLVRQVLFGMMKFLVFDSVGIAIFTAAPFLRESVASSLAVSLFSGAVAGVASAIVSQPADTILSRMNAE-ARPSVMEAVSSILAERGVQGLFVGLGTRCLWSGSIISGQFLLYDVFRNLLH 600          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1167.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G037_ECTSI1.040e-24570.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRE0_9PHAE6.610e-24470.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4EWL2_VITBC6.680e-11242.46Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A6V2T953_HETAK9.730e-11045.91Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A812TI72_SYMPI2.070e-10846.17McfN protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A7S4P916_GUITH3.360e-9441.19Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S0CU64_9EUKA1.610e-9339.30Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A8J5XS99_DIALT1.300e-9140.08Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A1Q9DSD4_SYMMI1.450e-9141.20Mitochondrial substrate carrier family protein N n... [more]
W7U2M4_9STRA1.070e-8940.00Mitochondrial phosphate carrier protein n=1 Tax=Na... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1167contigA-nodosum_M_contig1167:219495..227461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G037
PFAMsMito_carr
Model size3228
Max annot lvl2759|Eukaryota
KEGG koko:K15102
KEGG TC2.A.29.4
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.34e-250
EggNOG OGsKOG0767@1|root,KOG0767@2759|Eukaryota
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-12_007080.1
Descriptionphosphate ion transmembrane transport
Cds size2343
COG categoryU
BRITEko00000,ko02000,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1167.25.1prot_A-nodosum_M_contig1167.25.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1167 219783..226864 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866574.5341043-UTR-A-nodosum_M_contig1167:219494..2197821680866574.5341043-UTR-A-nodosum_M_contig1167:219494..219782Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1167 219495..219782 +
1680866574.6119423-UTR-A-nodosum_M_contig1167:226864..2274611680866574.6119423-UTR-A-nodosum_M_contig1167:226864..227461Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1167 226865..227461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866574.5464587-CDS-A-nodosum_M_contig1167:219782..2207871680866574.5464587-CDS-A-nodosum_M_contig1167:219782..220787Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1167 219783..220787 +
1680866574.5547094-CDS-A-nodosum_M_contig1167:223881..2243041680866574.5547094-CDS-A-nodosum_M_contig1167:223881..224304Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1167 223882..224304 +
1680866574.5634136-CDS-A-nodosum_M_contig1167:224476..2246471680866574.5634136-CDS-A-nodosum_M_contig1167:224476..224647Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1167 224477..224647 +
1680866574.5727088-CDS-A-nodosum_M_contig1167:224896..2251091680866574.5727088-CDS-A-nodosum_M_contig1167:224896..225109Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1167 224897..225109 +
1680866574.5817595-CDS-A-nodosum_M_contig1167:225279..2254511680866574.5817595-CDS-A-nodosum_M_contig1167:225279..225451Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1167 225280..225451 +
1680866574.5912852-CDS-A-nodosum_M_contig1167:226160..2262741680866574.5912852-CDS-A-nodosum_M_contig1167:226160..226274Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1167 226161..226274 +
1680866574.602757-CDS-A-nodosum_M_contig1167:226619..2268641680866574.602757-CDS-A-nodosum_M_contig1167:226619..226864Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1167 226620..226864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1167.25.1

>prot_A-nodosum_M_contig1167.25.1 ID=prot_A-nodosum_M_contig1167.25.1|Name=mRNA_A-nodosum_M_contig1167.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=781bp
MQATVGWSLGSTICNINSGLREAGMLASCGRHRRDYRRVRQRCVISGSGR
ATTATAVMMLCSLLGFSLQGVVCATEVGADSVGAVAVAFVAQVGGSRTRS
PRICSSSSDPTATSKPRVARLFNTRRCHGHGLRGPVVNSAFTSVTSCSGR
RARRVNPSRVVTIQLAAINTADEDTSRSCRRIDTVIDATAVDAVPADDPS
QPATETDSRLLQPTPYSLIPVPSTTRLDYLKHCSVRALVIAGAASSAVSM
LDPPSAADAYSPPSTATRDMVWLDEDSGTVSSKLSQVDETYGRGFVAYLA
RFLLNYDEGCQEYFNGRLDLLVPQKDGSHVWEEFQGFVASVGLGLNRYEG
SKGARLLCESLASKYATPEHEGAAEQLAVLFTLLPPDVQPVAAVKSLLSF
PTARFPWSKSVSSAEAASPDASSLMEKSPTELLPAAFRPRYDEATKAFYV
PGIPQNLDGNSMELMFGAQGPYPTSKERGLTAVDFALFAACGAIGCTTTH
LSVVPLDVVKTRLQTNPGSYEGLAQGVVTIAREEGWPMLLKGVGPTLMGY
LWYGITVYPGYELFKRLFIDMMGPLNAALFRVPLVLAAGATATSFACIGV
CPAEAVRIRQVADPSVGGVVSTTRQIVDESGWGKLYDGLPSILFRQISFG
MMKFLVFDYFTEFAYGMMPFLSEKTFTQLLVSLTSGLVAGVCAAIVSQPA
DTVLSILNRDPGRATIPGTLKNIVEERGVRGLFLGLQSRIVWSGAIISGQ
FLLYDVCKTALHVSASDLRVFLDTISSAGL*
back to top

mRNA from alignment at A-nodosum_M_contig1167:219495..227461+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1167.25.1 ID=mRNA_A-nodosum_M_contig1167.25.1|Name=mRNA_A-nodosum_M_contig1167.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7967bp|location=Sequence derived from alignment at A-nodosum_M_contig1167:219495..227461+ (Ascophyllum nodosum dioecious)
CTGATTCGGTTTTGTATCTGGTGCGTACCCAATCTAAGAAGTAAAGATCC ATGGCAGTGGGCTGGTTTCTCCTGTTTACAGTATAGATGATGTTTGGACT GTGATTCTCTCTGAAAGTCCATGGACTGCAAATAGGTAAATCCTTTTAGA AAAGGAAGCTCATGGAGAACTGATTGGCTACATGTTACCTGGGGTAAAGG GGTAAATGACCCCGTTTTGAGTGTGATGAAGAGGTGCAACGTAAGTCAAG CCTGACCACACCCAGGACAAGGCCTACGCTTAGCGATCATGCAAGCAACT GTCGGGTGGAGTTTAGGGAGTACTATCTGTAACATCAATAGCGGCCTACG AGAGGCAGGCATGCTGGCATCTTGCGGTCGCCATCGCCGCGACTATCGCA GGGTGCGACAACGATGCGTTATAAGCGGCAGCGGGCGCGCCACGACTGCG ACGGCAGTGATGATGCTGTGCAGTTTGCTTGGTTTCAGTTTACAGGGGGT CGTGTGTGCTACCGAAGTTGGCGCAGATTCCGTGGGGGCAGTCGCGGTCG CCTTTGTCGCACAGGTGGGGGGCTCAAGGACAAGATCTCCCCGAATATGC TCATCCTCGTCAGACCCAACTGCAACATCGAAGCCTCGCGTGGCTAGGCT CTTCAATACTAGACGTTGCCACGGCCATGGACTCCGCGGACCCGTTGTAA ACAGCGCTTTTACATCGGTCACCAGCTGTAGCGGCAGGAGAGCGCGGCGT GTCAATCCCTCACGCGTTGTCACAATTCAATTGGCTGCGATCAATACCGC TGACGAAGACACGTCACGATCATGTCGCCGAATCGACACTGTAATCGATG CTACAGCAGTCGATGCTGTTCCTGCCGACGATCCCTCGCAACCGGCAACA GAGACGGATTCTCGTTTACTTCAGCCGACGCCGTACTCGCTGATACCGGT GCCTTCAACGACAAGGCTAGACTACCTAAAGCATTGCTCCGTTCGCGCAC TTGTCATCGCAGGAGCAGCGAGCTCCGCGGTATCCATGCTCGATCCTCCT TCCGCCGCAGACGCTTACTCTCCTCCTTCGACAGCAACGCGAGACATGGT TTGGTTAGACGAGGACAGCGGGACTGTATCATCGAAGCTGTCTCAGGTGG ACGAGACGTACGGACGGGGGTTCGTTGCATACTTGGCGAGGTTTCTCCTG AACTACGACGAGGGCTGCCAGGAGTACTTTAATGGGAGGCTTGACCTTCT CGTGCCCCAAAAAGACGGCAGCCATGTCTGGGAGGAGTTCCAGGTAAGAT GTATTGGGAGCGTTTCCACGATAGTTTTTATATCTGCTGAGTCTCAACTT TTACACCTTCTGCACATCCGCCCCAGGCTGGGGGGAATGGATCACTTCGA ATACTACTGTGGGTTGCAAACGTTTGGAACGACTATTGAACATTGTCTGC TAAAATCTTGTGGGACGGAAAAAACGTGTTCGAAAAACTTTTTTTCTGTT AAGAAAATTTCTGATGAGAAGAGAACATCGATGCGACGTGATTTATGGGA CAGAAAAACATGATCCAAAAATATGCCATGTCTGGGAGTTTGTTGCTCCA TTTTTTTGTGTTGGATGCTCTTTCGTATGTTTGCATGGTACGGTGCGGCC GGCCAGCTGTAATCGCGTGGCTGTGCAAGCTCCACACGATCGAAGATCGT GTCCTGTGACATGCCACGGTTTTAAGTAGCACAAATATATTCAAAGCCGA GGAATCTCGGCGTCTGCACATGGTACTCTGTGGAGAGTCTGTTCAACGTA TACACCCTCTACGGTATGTTTTAGCTAATGTTGCACCCACAACACATCGC GAAGGACTGCTGCGGGTAGGCTTGTTGCCTTGTGCACCTACTTACAGTCG TGGCGTGGTACAGCACATGATCTTCGATCATTTCGGACTTACACAACCTC ACGAATGCAGCTCGAAGGCCGCAACGTGCCATACAAACAGTACTGTGCAA GCGGCCTCCAACAACATCTACTCTGTACTGAGGACGTAACTGCTGTACGA CGCACGTTGCAAAGGCTACATATATGTTGTCGGGACACGATTACATCTTC CATGTGGAGCAAAACCCCAGAACGAGTGCCAACTGATTGATATTCTTGGT TCGCTGCTTGCGGCGTCGATATGCTGCCACCGCGGCCGTCACCGCTGCAA CGCAGTCATTCATGCCTGTCTCCAACCTACACGAGGTCTGTGTTTGAAGG CAGATTTGAACTTTTGCGCCCGTCCGTCCGGGGGACGCCTTCGTCCACAA CATTTCGCGAAGGACTGCTTGGGATAGGCTTATTGCCTTGTGCACCTATT AATACTTACAGCCGTGGCGTGGCACAGCACGTTGTCTTCGATCGTTTCGG GCTTGCACAACCACACGAATGCAGCTGGAAGGCCGCAACGTGCCTTACAA ACAGTACTGTGCAAGCGACCTCCAACAGCATCTAATGCACTGTACCGAGG ACGTAACTGCTGTACGACGCACGTTGCAAAGGCTATAGATATGCTATCGA GACACGATTGCATCTTCTGTTAATAGAGATATTATCTAGGACAGGATATC ATGTATGGTCACAAATACAGCAAGAGTATGGATCAACCGGGTAAGGTTGC CAATCATGCACGTGGGCAGTTAAACAGGGAAAATTAATACTTCCCTGTCA CCGTTCGCGCCTGGGAATTTTGGTCTCACGAGACGGTTTGGGGAGTCCCG TCCCTCGTCAGCCTGCTCATCTTCATACTCAGGCTGAATCTGGTGCTTAC TTGCGGGATTCCTCCCGAGTTCCGCGGCGGTGTCCATTTATTTATTTAAA ACCGCCATACGCCATCGGGTCAGTCCCGAGTTTATCGGGTCACGCAATTG CGTACCGATGGCGTTCACTGCCGAGAATCCGCTGGCACAGGGCCAGCAAA CCTAAAGGTAGTTCCAAACGAGTGCTGCCCTGGCAGGTCTGGCTACAAGT ACATTACAGGATGCAACCAACCGGGTAGTTATGTAGCTAGCATGGATTAA GCACTCAAGTCCCTGAAAGTTACAAACAACATTTGAGACTGCGTCGCTGT GGCGAAAACGAAGTCCTCATAGCTCTCGCAGGAGAGAAGGTATACGTAAT GTCTGTTTCGCAGGGGGGGGGGCGTTCTCTACGAAAATCATGGTTTAAAT AAAAGTTTGAACGCATCCAGATCTTCTGAGCATCCCCCAGACAGGGGGAA AAAATATCAAAACGTCTGGTTGGGATCATGGGCGGCAAAGACAACCTCTT GATGGCATTTAATCGGGTTCCCCGATGGTAATAACATAGGGTCAACAGTA TCATGTCGGGCAGAAACCCACGGTTATACTGTACACTTGCATTAATTGTC ATGCAGGGACACCAAGCAAATCAAAATACAAAGGACGCGATAATACTGGA TAGAGCTCCATTTTTTCCATTCGGTATAGGATGGTATGGGTGCCAGCACT ATTATATTACCATAATATTAGCCAACAAGCAAGGTACTACTACATATTTA CAAGGCAGGATACAAGGTTTTGCTTTCTGATAATCATCAGGTGAATCTAA CTACTATAATAGATGCTAAGGAAGAAAAGTAATAATATCTATACAATGAA TTTTATGGTTAGTACAGTAATGTAATATAGGTGTAAGTACAAGGCTACCA CAGAGTTCTCCCTGTGAAATCGAAAGAGATGAGGTATACGATGATAGGGG TAACACGCTATATCAGTTGGAAAGGGCAACAGGAGGTCTACAATTATCTT AATGGTATTTACGACCGGCTACTGGGATTGTTTAAAGAGAAATCTGAACG CATCTAAACCTTCTGAGCATGCCATCAAAGCTTTTTGGTGGGAACATATT CTGCCAAGCCAAGACCTCTTCATGGCATTTAATCGGGTTATATTCCCCGA TAGTAGAAGCATAGGGTCAAGAGTATAGTATAGTGTCGGGGAGAAACCCT TCGTTATACTGTACGCTTACATTTATTCACCATGCAGGGACACCAAAAGT AGAGACAAAAAACAATGAGTTTAGGTACAGCTCAGTTTTGTTACGTTGGG TCTAGGGTCGGATGGGTGTCAGCACTACAAGCAAGAGTGCAAACTGTCGA TTGGAGGGGGCAACATGAGTCTACCATTATATTCATGGTATTTGCAGTAT AGAGGTTTTAACAGGCAGAGGTTAGAGTCTCGAGGATAATGAGGTTAGAG GATGAGGGGACAAAGAGGACCACCACTCAAGTCTTGTACATAGTATAATC CAGAATGTACCAGAATCCGTTATTCACCCGGGAGTAGACGAATTCATGCG TTTTACCCGCCCTCCACTGCTTGCCGCCCGACCGCAGGGTTTCGTCGCGT CTGTTGGACTGGGCCTGAACAGGTATGAGGGCTCGAAGGGCGCTCGACTG CTCTGCGAGTCCCTGGCGAGCAAGTATGCCACACCTGAGCACGAAGGCGC CGCCGAGCAGCTTGCCGTCCTCTTCACTCTCCTACCGCCAGACGTCCAGC CGGTCGCGGCGGTGAAATCTTTGCTCTCCTTTCCGACGGCGCGCTTCCCT TGGTCTAAGAGCGTCAGTTCTGCCGAGGCTGCGAGCCCGGACGCGTCGTC TTTGATGGAGAAGAGCCCTACCGAGCTACTGCCAGCGGCTTTCCGACCGC GGTACGACGAAGCCACCAAAGCGTTTTACGTCCCCGGGATTCCCCAGAAT TTGGATGGGAACAGCATGGAGCTCATGTTTGGGGCTCAAGGACCATACCC TACTAGCAAGGCAAGGAAACCCGTGCAGTCTTCACATGAACGCCACGGGC TCGCGCGGGGCTATGTCTTGGAATAGAACATACGTACCACTGCCGTCGTT TCCCCTTGCCCCCCCCCCGCGCCCGCGACTTTTGATAAATAAGCGTGTTT ACTGTATCGTGCTCCCACTGTGTCTTGAGCAGGAGCGCGGGCTGACCGCG GTCGACTTCGCACTTTTTGCGGCTTGTGGCGCCATCGGATGCACGACGAC GCATCTATCGGTGGTCCCACTCGATGTCGTGAAGACCCGCCTACAGACGA ACCCCGGGAGCTACGAGGGCCTGGCGCAGGGAGTGGTCACCATCGCAAGA GAGGTGATCGAACGCGAAATCGACAGCCTCGCTAGCCTCGCTTGAGTGCT TTGGGCCGCGAGCGCGAGTCTCACGCGCGACGTTGATCTCCACCGAAAAA AAAAAGGTCCTGAATCTTTTAACGCCGCAGAATATGGAACGAGGGCACGT GGGCACTTGAGGGTAGTTATGTACTAGTTGGGTGATGCCGTAGATGAAAA TGCTCGCGACGTTGCGGTTTTCCAAACATGGCAATTGTGGCGTTTTACAC AGGAGGGGTGGCCGATGCTGCTTAAGGGGGTGGGGCCAACCCTGATGGGG TACCTGTGGTACGGTATCACCGTGTACCCAGGGTACGAGCTTTTCAAGCG CCTTTTCATCGACATGATGGGACCGCTCAACGCGGCGCTTTTCCGGGTTC CCTTGGTCCTCGCGGCTGGCGCGACCGCCACGTCTTTTGCGTGCATAGGG GTCTGCCCCGCAGAGGTGAGCGCGGTGGACGGACGAGGGGCGGCCGGAGT CGTTGTCATCCGGAGTATCTACGTAGGCTAGCCCCTCGCCAGGACATGGG GTAGCGTCTTGGCCTAACTAGAAATGCTCGCCACGAATCAAGGCTCATTT TGTACTTCCGTCACATCGTGCTTTCTCCGTGCCAGGCGGTGCGTATTCGA CAGGTGGCTGATCCGTCGGTCGGGGGCGTGGTTTCCACCACACGGCAGAT TGTCGACGAGAGCGGCTGGGGGAAGCTGTACGATGGGTTGCCATCTATTC TGTTCCGGCAGATCAGCTTCGGAATGATGAAGTTCCTCGTGTTCGATTAC TTCACGGGTGCGTGCATCTATTGCCTATCTCTCTATATATATCTGTGTGT CAACATTACCCGTCCGTTTCGAGTTCCTGTTGCAATCGTCATCTTCGGCA CGTACACAAATGGTCCAAGGCAAGCGGTCGAGGGAAACGTTTGAAGTGAG GGCGGTACCGGGGTACAGTACCTGGTACTGCCCAATGTACATTGCTCAAT AATGATTTGGGACAATAATTTTTCTGGGACGCATTTGCTTTTGCGCCATT CGCGCTCCCGTAAACGGCACTATTGATGTGACTACTAATATGACTATTAA TATGACTTTCGATATAGCTCGACCTATTCGCTCCAGGCTTGTCATGCTAT TCATGCTTGAGTTTACTTCATTTTTGACCTAAATCTCTGTGTGCTGCTTT AGCTCCAGCGCTTGGAGGCGATCGCTTAATTTCTTGCTTCTCTTCCTTCA TGTGTTCTTCAAGTCGCTGAAACCTCTTGTCCATCCCCCTAATCGACTCC TGGATTTCTTTAAGCATCTTTAGTTGCTCTGTAAGGAACGGATTCACTGC GGCTTATTGTTGGTCTGGTACCTGGCCCTCGGAAGCGGCTCCTTTCTTCG CTCGCGCTAGAACCTACTCCCCCTTGTAATGTTATTCGTGCTCGAGTTGA TTTCATTTTTAACCAAAATCTCCGTGTGATCATTTTTGGCCGGTTCCTCA ACCACAATCGCTTCAGAGTTTGCATACGGAATGATGCCTTTCCTTTCTGA GAAGACATTCACCCAGCTCTTGGTGTCTCTCACGAGCGGATTGGTCGCCG GCGTGTGCGCTGCCATCGTGTCCCAGCCAGGTGCGATCATACGCCAGGGA AAAATGGCGCCGAGCAAGCGTGCGCGAGGCAATACACTGCGGTCGATGCA TGCTCCACTTTTTCCGTGCCCACGAAATGTCTTAAATGTCCACCATGGTC TTAAAAAAGTAAAGAAGCTGTCGCGAATGGATCGAACGTGCGCGGATTTG TGTGTGGGAATGTTTGCCTGTGCAAACTCTCTTTCTTGCCTGTACTCCAA AGTGTAGAGCTAACTCAACCCTCTTAGCCTTTAGTCTAAAGTGCAACCCT CTTGCTTTTTGCCCATCCCTCTTTTTGATGTTTAACGTCTTGCGTGTCGA TCGGATGTCGTTCCCACTCCCACAGCCGACACGGTGCTCAGTATCTTGAA CCGCGATCCCGGGCGCGCGACCATCCCGGGTACTCTCAAGAATATTGTCG AAGAACGGGGTGTTAGGGGACTGTTCCTGGGGCTGCAAAGCCGAATCGTG TGGTCAGGGGCGATTATCTCGGGACAATTTTTGCTGTATGACGTGTGCAA GACGGCTCTCCACGTGAGCGCGAGTGACCTCAGGGTTTTCCTCGACACGA TCTCCAGTGCAGGATTGTAGCAGTTTTAAGTTTTTCCATCGCAGAGTTTG TACCGTTGCGTGTATACTGTACGTAGAGCAGGTTTAACCTCGGATTGTTT TCTCGACCCGTGTGGACTGGGACATGGCAAGTGTAACATAACCGTTCGTG CTCGTTCCAGACGCCCTCCCTGGAGACGGTTTTCTTTTTGAGAGGATCGG CTCGGGAATTTTGTCGGCGAAGGGTGTTGCGGTGACATTGAATAGCAGAG AGGAAGGTGTTGGTCAACCATGGATTTAAGAAGTTTCGTAGCGCCACGTT CACCGTTCACCAGCATCGCATTGAAACGTAATGCCGCTTTAGAGGTTTAG AGGGAGGGCGGCGAAGGAAACGTATTCAAGAATCGAACAGTTCGGGTGCG CGATGATGTTTCGGAACGTGTTGGCGTTATATATTCGTAGCATCAGCACT GTTAAGTATTGATATGATAGCGTTTTGGGGCTTGGACGTTGACCGACGGG ACGACGAAACGTTTTTTACCTAACCTCGTTTTTTTTTAATGTTTTTACTG TATTAATAGATGGACCAGATAGATCACGCGCACGGAGAAAAAAATGGAGA AAGAAATCGAGGTCGTG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1167:219495..227461+

>mRNA_A-nodosum_M_contig1167.25.1 ID=mRNA_A-nodosum_M_contig1167.25.1|Name=mRNA_A-nodosum_M_contig1167.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2343bp|location=Sequence derived from alignment at A-nodosum_M_contig1167:219495..227461+ (Ascophyllum nodosum dioecious)
ATGCAAGCAACTGTCGGGTGGAGTTTAGGGAGTACTATCTGTAACATCAA
TAGCGGCCTACGAGAGGCAGGCATGCTGGCATCTTGCGGTCGCCATCGCC
GCGACTATCGCAGGGTGCGACAACGATGCGTTATAAGCGGCAGCGGGCGC
GCCACGACTGCGACGGCAGTGATGATGCTGTGCAGTTTGCTTGGTTTCAG
TTTACAGGGGGTCGTGTGTGCTACCGAAGTTGGCGCAGATTCCGTGGGGG
CAGTCGCGGTCGCCTTTGTCGCACAGGTGGGGGGCTCAAGGACAAGATCT
CCCCGAATATGCTCATCCTCGTCAGACCCAACTGCAACATCGAAGCCTCG
CGTGGCTAGGCTCTTCAATACTAGACGTTGCCACGGCCATGGACTCCGCG
GACCCGTTGTAAACAGCGCTTTTACATCGGTCACCAGCTGTAGCGGCAGG
AGAGCGCGGCGTGTCAATCCCTCACGCGTTGTCACAATTCAATTGGCTGC
GATCAATACCGCTGACGAAGACACGTCACGATCATGTCGCCGAATCGACA
CTGTAATCGATGCTACAGCAGTCGATGCTGTTCCTGCCGACGATCCCTCG
CAACCGGCAACAGAGACGGATTCTCGTTTACTTCAGCCGACGCCGTACTC
GCTGATACCGGTGCCTTCAACGACAAGGCTAGACTACCTAAAGCATTGCT
CCGTTCGCGCACTTGTCATCGCAGGAGCAGCGAGCTCCGCGGTATCCATG
CTCGATCCTCCTTCCGCCGCAGACGCTTACTCTCCTCCTTCGACAGCAAC
GCGAGACATGGTTTGGTTAGACGAGGACAGCGGGACTGTATCATCGAAGC
TGTCTCAGGTGGACGAGACGTACGGACGGGGGTTCGTTGCATACTTGGCG
AGGTTTCTCCTGAACTACGACGAGGGCTGCCAGGAGTACTTTAATGGGAG
GCTTGACCTTCTCGTGCCCCAAAAAGACGGCAGCCATGTCTGGGAGGAGT
TCCAGGGTTTCGTCGCGTCTGTTGGACTGGGCCTGAACAGGTATGAGGGC
TCGAAGGGCGCTCGACTGCTCTGCGAGTCCCTGGCGAGCAAGTATGCCAC
ACCTGAGCACGAAGGCGCCGCCGAGCAGCTTGCCGTCCTCTTCACTCTCC
TACCGCCAGACGTCCAGCCGGTCGCGGCGGTGAAATCTTTGCTCTCCTTT
CCGACGGCGCGCTTCCCTTGGTCTAAGAGCGTCAGTTCTGCCGAGGCTGC
GAGCCCGGACGCGTCGTCTTTGATGGAGAAGAGCCCTACCGAGCTACTGC
CAGCGGCTTTCCGACCGCGGTACGACGAAGCCACCAAAGCGTTTTACGTC
CCCGGGATTCCCCAGAATTTGGATGGGAACAGCATGGAGCTCATGTTTGG
GGCTCAAGGACCATACCCTACTAGCAAGGAGCGCGGGCTGACCGCGGTCG
ACTTCGCACTTTTTGCGGCTTGTGGCGCCATCGGATGCACGACGACGCAT
CTATCGGTGGTCCCACTCGATGTCGTGAAGACCCGCCTACAGACGAACCC
CGGGAGCTACGAGGGCCTGGCGCAGGGAGTGGTCACCATCGCAAGAGAGG
AGGGGTGGCCGATGCTGCTTAAGGGGGTGGGGCCAACCCTGATGGGGTAC
CTGTGGTACGGTATCACCGTGTACCCAGGGTACGAGCTTTTCAAGCGCCT
TTTCATCGACATGATGGGACCGCTCAACGCGGCGCTTTTCCGGGTTCCCT
TGGTCCTCGCGGCTGGCGCGACCGCCACGTCTTTTGCGTGCATAGGGGTC
TGCCCCGCAGAGGCGGTGCGTATTCGACAGGTGGCTGATCCGTCGGTCGG
GGGCGTGGTTTCCACCACACGGCAGATTGTCGACGAGAGCGGCTGGGGGA
AGCTGTACGATGGGTTGCCATCTATTCTGTTCCGGCAGATCAGCTTCGGA
ATGATGAAGTTCCTCGTGTTCGATTACTTCACGGAGTTTGCATACGGAAT
GATGCCTTTCCTTTCTGAGAAGACATTCACCCAGCTCTTGGTGTCTCTCA
CGAGCGGATTGGTCGCCGGCGTGTGCGCTGCCATCGTGTCCCAGCCAGCC
GACACGGTGCTCAGTATCTTGAACCGCGATCCCGGGCGCGCGACCATCCC
GGGTACTCTCAAGAATATTGTCGAAGAACGGGGTGTTAGGGGACTGTTCC
TGGGGCTGCAAAGCCGAATCGTGTGGTCAGGGGCGATTATCTCGGGACAA
TTTTTGCTGTATGACGTGTGCAAGACGGCTCTCCACGTGAGCGCGAGTGA
CCTCAGGGTTTTCCTCGACACGATCTCCAGTGCAGGATTGTAG
back to top