mRNA_A-nodosum_M_contig116.33.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig116.33.2 vs. uniprot
Match: D7FJZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ5_ECTSI) HSP 1 Score: 265 bits (677), Expect = 4.960e-71 Identity = 150/262 (57.25%), Postives = 199/262 (75.95%), Query Frame = 3
Query: 390 SKKGFDAARAAMCLLKEEDHVWTIETCMETINVLRAGNNSLKAQLLEVDTNFKDHVEARQRRIDELEKATRSLEHEKSEIEVTLETERGERRCRERDLVCQKEEITNALESTISNLKEEVESLQAFAGTRDRVNAQIAALKAENEDLKDKQELSLQSLRQELAHERASREAEVERSLLAARKYLRQQVEESLEGDYERLVKENAKMRKRLLHLDKERQVMFSELEDERAVAKDLQTELDIARALDQRSAGKMKYYMRMLKRN 1175
S FDAARAAMCLLKEEDHVWTIETCMETIN+LRA NN+LK QLL+VDTNF DHV+ARQR+I EL A S K ++E T+E+ERG+RR +ERD Q+E A + TI L EVESLQ ++G RDRVNAQ+AAL+A N +L+D+QE+ LQSLR++L+ A++E EV R +L A++ +R +VE + G +ERL++EN +++ +L LD + Q++ SELE E A L+TEL+IARA++ +SAGK+KYYMRMLKR+
Sbjct: 32 SPTSFDAARAAMCLLKEEDHVWTIETCMETINLLRARNNALKEQLLDVDTNFTDHVQARQRKIQELTLAVESASAIKEQLEATVESERGDRRRQERDQQRQREAEAAAYQETIKALTSEVESLQGYSGERDRVNAQLAALEAANAELQDQQEIKLQSLRKKLSEVEAAKEDEVARLVLEAKENMRDEVEIAFGGAHERLLQENQELKDKLKQLDSKLQIILSELEHETAAKAGLKTELEIARAMESKSAGKIKYYMRMLKRS 293
BLAST of mRNA_A-nodosum_M_contig116.33.2 vs. uniprot
Match: A0A6H5JUJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ9_9PHAE) HSP 1 Score: 174 bits (440), Expect = 1.310e-40 Identity = 121/293 (41.30%), Postives = 170/293 (58.02%), Query Frame = 3
Query: 471 METINVLRAGNNSLKAQLLEVDTNFKDHVEARQRRIDELEKATRSLEHEKSEIEVTLETERGERRCRERDLVCQKEEITNALESTISNLKEEVESLQAFAGTRDRVNAQIAALKAENEDLKDKQELS----------------------------------------------LQSLRQELAHERASREAEVERSLLAARKYLRQQVEESLEGDYERLVKENAKMRKRLLHLDKERQ------------VMFSELEDERAVAKDLQTELDIARALDQRSAGKMKYYMRMLKRN 1175
METIN+LRA NN+LK QLL+VDTNF DHV+ARQR+I EL A S K+++E T+E+ERG+RR +ER E A + TI L EVESLQ ++G RDRVNAQ+AAL+ N +L+D+QE+ LQSLR++L+ A+++ EV R +L A++ +R +VE + G +ERL+KEN +++ +L LD + Q ++ SEL E A L+TEL+I RA++ +SAGK+KYYMRMLKR+
Sbjct: 1 METINLLRARNNALKEQLLDVDTNFTDHVQARQRKIQELTLAVESASAIKAQLEATVESERGDRRRQERXXXXXXEAEAAAYQETIKALTSEVESLQGYSGERDRVNAQLAALEVANAELQDQQEIKVGSFARWFDMETFSWSSTTMIDSPPCNAGWFAAMPLIAGCDEVAAGLQSLRKKLSEVEAAKKDEVARLVLEAKENMRDEVEIAFGGAHERLLKENQELKDKLKQLDSKLQASLACQPFSPTLIVLSELAHETAEKAGLKTELEIVRAMESKSAGKIKYYMRMLKRS 293 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig116.33.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig116.33.2 >prot_A-nodosum_M_contig116.33.2 ID=prot_A-nodosum_M_contig116.33.2|Name=mRNA_A-nodosum_M_contig116.33.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=788bp MPAYAAQRRGSKARRIKRRESIAQKSSSPPGTLSVQQQFGLVQGVPLSPSback to top mRNA from alignment at A-nodosum_M_contig116:610784..638678- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig116.33.2 ID=mRNA_A-nodosum_M_contig116.33.2|Name=mRNA_A-nodosum_M_contig116.33.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=27895bp|location=Sequence derived from alignment at A-nodosum_M_contig116:610784..638678- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig116:610784..638678- >mRNA_A-nodosum_M_contig116.33.2 ID=mRNA_A-nodosum_M_contig116.33.2|Name=mRNA_A-nodosum_M_contig116.33.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=2364bp|location=Sequence derived from alignment at A-nodosum_M_contig116:610784..638678- (Ascophyllum nodosum dioecious)back to top |