mRNA_A-nodosum_M_contig1155.2.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI) HSP 1 Score: 239 bits (609), Expect = 5.040e-70 Identity = 178/484 (36.78%), Postives = 246/484 (50.83%), Query Frame = 1
Query: 1 MAVNFAVSTKAPILPIPLDNEMLHGLRRFSDRFAGKPMSQASLKALQCVPLAWACLAVREAETMSAAKRNLAASKSMQEIAVPGWIKVIEKAMNDTEGAIRMPTGWKEALYYTTLGTGKGKRETFMQKPATCMTKFKPLKTEYTKGAAWWYDTHEDVAAKLPSGT---------SPRTHLRNWRGTCCFSPLDPGKT*RRPRKRRNSTRVTIAWVATIA*REGMRPGAANWVLSTPTTPRQSNSTAGGSSEAVDTPDSLARMAAAAHLQALAGSGAAGDGTPRGEVMDKPD---EMPDEYYYPYLLLACMWTSWGGNTPSEWKIPCVFK--RAAEAQEELGKG*G----------DRYHRGQPYRQSLRDVSAEPERRRDEPPPALRRHKAGEGPGKER*DRQGEQEG*DGIPRHEKEGLGRHGRGQYPRRGAFCEHQKVGRAERKQAAAAARAEKITSLEKKLMLGLGDPVTTKAELHSLLDQ 1380
MA+NF +S KAP L I L +M+ G R+ D+F G+ M+QA LKALQCVP+A A LAV++ E M + RN A SK MQEIAVPGWIKV E A+ D++G + P GWK+ALYYTTLGTG+ R+TFM+ P TKFK LKTEYTKGA W+DTH + + +L SGT S + + +G PR R++ V ++ V T + A S P +LAR AA A + +A A+G G+ G + +P+ ++PD+YYYPYLLLAC W+SW GNTPSEWK R ++ + G G D G P L + + + RR + + + KE+ + E D K GL +K+ + + + AA R +KI +LE+KLML + DP KA+L++LLD+
Sbjct: 1 MAINFDISMKAPPLNIDLTEDMMWGFHRYCDKFGGRKMNQAGLKALQCVPIAHAALAVKQGEDMKSDVRNAAMSKRMQEIAVPGWIKVCEAAIKDSQGELVFPHGWKDALYYTTLGTGENPRQTFMKNPKALFTKFKALKTEYTKGAQLWFDTHPESSTELNSGTQTTDALDDLSADMYRKATKGNAAKEDAAADIFFNTPR--RSAEGVVVSGVTTTSPLPTPAADAXXXXXXXXXXXXXXXXXXXTS------PQALARRAAEALRREMASPTASGSGS--GANLGRPEGNEDIPDDYYYPYLLLACPWSSWSGNTPSEWKHLAASSGPRNRASKGDKGNSNGNDNSNEVVITDDNPIGSPRAMGLMNANGDAVSRRQYFANIKKEKEQVKKDAKEKENVALRNEALD----TRKRGLAAMESANTHVGELSSNIKKMVQLQEESNLAARRKDKIEALERKLMLAISDPNMVKAQLNALLDE 470
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5JXM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM3_9PHAE) HSP 1 Score: 163 bits (413), Expect = 6.490e-41 Identity = 89/182 (48.90%), Postives = 122/182 (67.03%), Query Frame = 1
Query: 1 MAVNFAVSTKAPILPIPLDNEMLHGLRRFSDRFAGKPMSQASLKALQCVPLAWACLAVREAETMSAAKRNLAASKSMQEIAVPGWIKVIEKAMNDTEGAIRMPTGWKEALYYTTLGTGKGKRETFMQKPATCMTKFKPLKTEYTKGAAW-WYDTHE-DVAAKLPSGTSPRTHLRNWRGTCCF 540
MAV+F S KAP+LPI + + LR+F + K M+Q +LK L +PL + LAV+EA+ MSAA+RNLAASK MQEIAVPG+IK+IE A++ EG +MP WK +YYTTLG+G K +TFM+KP+T +TKFK K +YT+ W W DT++ + ++LPSGT+ + L F
Sbjct: 105 MAVDFPKSQKAPMLPINRPEDFMFALRKFCGTYGNKTMTQPALKMLPSIPLVHSALAVKEADKMSAAQRNLAASKCMQEIAVPGFIKLIEHALSTMEGPPQMPHKWKVMVYYTTLGSGTSKAKTFMEKPSTVLTKFKSYKAKYTR--VWLWLDTNDKNTPSELPSGTNTQDSLEELNDAMWF 284
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5KFH5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFH5_9PHAE) HSP 1 Score: 124 bits (310), Expect = 3.090e-30 Identity = 64/118 (54.24%), Postives = 86/118 (72.88%), Query Frame = 1
Query: 1 MAVNFAVSTKAPILPIPLDNEMLHGLRRFSDRFAGKPMSQASLKALQCVPLAWACLAVREAETMSAAKRNLAASKSMQEIAVPGWIKVIEKAMNDTEGAIRMPTGWKEALYYTTLGTG 354
MAV+F S KAP+LPI L + + LR+F + K M+Q +LK LQ +PL + LAV+EA+ MSAA+RNLAASK MQEIAVPG+IK+IE A++ G ++MP WK +YYT+LG+G
Sbjct: 1 MAVDFPKSQKAPMLPINLSEDFMFALRKFCGTYGNKTMTQPALKMLQSIPLVHSALAVKEADKMSAAQRNLAASKCMQEIAVPGFIKLIEHALSIMGGPLQMPHKWKVMVYYTSLGSG 118
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5K6E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6E0_9PHAE) HSP 1 Score: 105 bits (262), Expect = 1.400e-22 Identity = 57/111 (51.35%), Postives = 81/111 (72.97%), Query Frame = 2
Query: 932 KYLASSSGPQKRKKSSAKDEEIDITEDNPIGSPSAMSRLNPNGDAMSRRQHYAAIKREKDLAKKDEIDKENKKARTEFLDTRKKGLAAMEEANIHVGVLSANIKRLVELRE 1264
K+L SS GP ++K ++ + +NP+ SP+ MSRLNPNGDA+SRRQH+AAIKREK+ +K DK ++A E L+T+KKGLAA+E A+ H+ + AN+KR+VEL+E
Sbjct: 58 KHLDSSDGPSIKRKGG----DVTVDSENPVCSPAVMSRLNPNGDALSRRQHFAAIKREKEQERKKAADKRLQEAWKEALETKKKGLAALEAASTHIETIGANMKRMVELKE 164
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5JUT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT5_9PHAE) HSP 1 Score: 100 bits (250), Expect = 3.320e-22 Identity = 55/103 (53.40%), Postives = 75/103 (72.82%), Query Frame = 1
Query: 1 MAVNFAVSTKAPILPIPLDNEMLHGLRRFSDRFAGKPMSQASLKALQCVPLAWACLAVREAETMSAAKRNLAASKSMQEIAVPGWIKVIEKAMNDTEGAIRMP 309
MAV+FA S KAP+LPI L + + LR+F + K M+Q +LK LQ +P + LAV+EA+ MSAA+RNLAASK MQEIAVPG+ K+IE A++ +G ++MP
Sbjct: 1 MAVDFAKSQKAPMLPIDLSEDFMFALRKFCGTYGNKTMTQPALKMLQPIPRVHSALAVKEADKMSAAQRNLAASKCMQEIAVPGF-KLIEHALSTMDGPLQMP 102
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5JVT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT0_9PHAE) HSP 1 Score: 105 bits (261), Expect = 1.810e-21 Identity = 53/119 (44.54%), Postives = 74/119 (62.18%), Query Frame = 1
Query: 1 MAVNFAVSTKAPILPIPLDNEMLHGLRRFSDRFAGKPMSQASLKALQCVPLAWACLAVREAETMSAAKRNLAASKSMQEIAVPGWIKVIEKAMNDT---EGAIRMPTGWKEALYYTTLG 348
MA+N VS +AP LP+ L N+++ F + G P Q S KALQC P+AWACLAV+EAE S R+ S+ QEIA+PGWIK+ +A+ ++ + +R P G + LY+ TLG
Sbjct: 1 MALNLEVSNRAPALPVELTNDLMDSFGIFCATYGGTPRGQQSQKALQCFPIAWACLAVKEAEKKSKEVRDRDVSRCYQEIALPGWIKLCHRAITESAESDNPLRFPAGLESKLYFPTLG 119
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5JTM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM3_9PHAE) HSP 1 Score: 104 bits (260), Expect = 2.910e-21 Identity = 60/111 (54.05%), Postives = 82/111 (73.87%), Query Frame = 2
Query: 932 KYLASSSGPQKRKKSSAKDEEIDITEDNPIGSPSAMSRLNPNGDAMSRRQHYAAIKREKDLAKKDEIDKENKKARTEFLDTRKKGLAAMEEANIHVGVLSANIKRLVELRE 1264
K+L SS GP K++K + ++ + +NP+ SP+ MSRLNPNGDA+SRRQH+AAIKREK+ K +KE ++AR E L+T KKGLAA E AN HV + A++KR+VEL+E
Sbjct: 164 KHLDSSDGPSKKRKGA----DVTVDSENPVCSPAVMSRLNPNGDALSRRQHFAAIKREKEQEMKAAAEKELQEARKEPLET-KKGLAAFEAANTHVETIGADMKRMVELKE 269
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5KGF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF1_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 5.880e-18 Identity = 50/93 (53.76%), Postives = 71/93 (76.34%), Query Frame = 2
Query: 932 KYLASSSGPQKRKKSSAKDEEIDITEDNPIGSPSAMSRLNPNGDAMSRRQHYAAIKREKDLAKKDEIDKENKKARTEFLDTRKKGLAAMEEAN 1210
K+L SS GP K++K ++++ +NP+ SP+ MSRL+PNGDA+SRRQH+AAIKREK+ +K DKE +++R E L+T+KKGLAA+E AN
Sbjct: 145 KHLDSSDGPSKKRKGG----DVNVDSENPVCSPAVMSRLDPNGDALSRRQHFAAIKREKEQERKATADKELQESRKETLETKKKGLAALEAAN 233
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5KJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW8_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.130e-17 Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 2
Query: 932 KYLASSSGPQKRKKSSAKDEEIDITEDNPIGSPSAMSRLNPNGDAMSRRQHYAAIKREKDLAKKDEIDKENKKARTEFLDTRKKGLAAMEEANIHVGVLSANIKRLVELRE 1264
K+L SS G K++ ++ + +NP+ SP+ MSRLNPNGDA+SRRQH+AAIKREK+ +K DKE + L+T KKG AA+E AN HV + AN+KR+VEL+E
Sbjct: 148 KHLDSSDGLSKKRTGG----DVTVDSENPVYSPAVMSRLNPNGDALSRRQHFAAIKREKEEERKAAADKELQXXXXXALET-KKGPAALEAANTHVDSIGANMKRMVELKE 253
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5KHV4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV4_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 1.200e-14 Identity = 46/136 (33.82%), Postives = 69/136 (50.74%), Query Frame = 1
Query: 1 MAVNFAVSTKAPILPIPLDNEMLHGLRRFSDRFAGKPMSQASLKALQCVPLAWACLAVREAETMSAAKRNLAASKSMQ-EIAVPGWIKVIEKAMN-------------------------DTEGAIRMPTGWKEAL 330
MA++ V+ +AP LP+ L N+++ F + G P+ Q S KALQC P+AWACLAV+EAE S R+ S+ EI +PGWIK+ +A+ +++ +R P GW+ L
Sbjct: 1 MALDLEVTNRAPALPVELTNDLMDSFGIFCATYGGTPLGQQSQKALQCFPIAWACLAVKEAEKKSKEVRDRDVSRCYHDEIELPGWIKLCNRAIASPRXMEXXXXXXXXXXXXXXXXESAESDNPLRFPAGWETKL 136 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1155.2.1 >prot_A-nodosum_M_contig1155.2.1 ID=prot_A-nodosum_M_contig1155.2.1|Name=mRNA_A-nodosum_M_contig1155.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=189bp MAVNFAVSTKAPILPIPLDNEMLHGLRRFSDRFAGKPMSQASLKALQCVPback to top mRNA from alignment at A-nodosum_M_contig1155:71591..74240- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1155.2.1 ID=mRNA_A-nodosum_M_contig1155.2.1|Name=mRNA_A-nodosum_M_contig1155.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2650bp|location=Sequence derived from alignment at A-nodosum_M_contig1155:71591..74240- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1155:71591..74240- >mRNA_A-nodosum_M_contig1155.2.1 ID=mRNA_A-nodosum_M_contig1155.2.1|Name=mRNA_A-nodosum_M_contig1155.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=567bp|location=Sequence derived from alignment at A-nodosum_M_contig1155:71591..74240- (Ascophyllum nodosum dioecious)back to top |