mRNA_A-nodosum_M_contig11532.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 137 bits (346), Expect = 1.460e-35 Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 1
Query: 1 AFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
AF+YA+PV E + C QC +I+ A+G+DC+ PGATLASLPIR GYWR+S L+IH C+H AC GAT ++S DYC +GYQGP C VCT GFGRGAG +C
Sbjct: 856 AFEYAMPVDDENA--AFSCEQCVNIDGAEGLDCELPGATLASLPIREGYWRSSRESLSIHQCVHHTACVGATQISSAQDYCGEGYQGPYCTVCTEGFGRGAGNTC 958
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI) HSP 1 Score: 136 bits (342), Expect = 5.070e-35 Identity = 62/105 (59.05%), Postives = 75/105 (71.43%), Query Frame = 1
Query: 1 AFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
AF+YA+PV GE+ + C QCA + A+G+DC+ PGATLASLP+R GYWR+ LTIH C S AC GA ++S DYC +GYQGP CAVC GFGRGAG SC
Sbjct: 849 AFEYAMPVDGEDT--TFSCEQCASVNGAEGLDCEIPGATLASLPVREGYWRSGGESLTIHQCSPSSACVGAAQISSAQDYCGEGYQGPYCAVCAEGFGRGAGNSC 951
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI) HSP 1 Score: 127 bits (320), Expect = 4.670e-32 Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 1
Query: 1 AFQYAVPVVGEEL-------VESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
AF+YA+PV E S+ C QCA+++ A+G+DC+ PGATLAS+P+R GYWR+S+ L +H CLHSDAC GAT ++S +DYC D Y+GP CAVC G G+ ++C
Sbjct: 504 AFEYAMPVDSEXXXXXXXPDAASVVCLQCANLDGAEGLDCESPGATLASMPVREGYWRSSQESLVVHGCLHSDACAGATQISSSDDYCKDCYEGPYCAVCAEGCCEGSSHTC 615
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE) HSP 1 Score: 127 bits (320), Expect = 4.710e-32 Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 1
Query: 1 AFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
AF+YA+PV G++ C QCA+ + A+G+DC+ PGATLASLP+R GYWR+S+ L +H CL+SDAC G T ++S +DYC D Y+GP CAVC G G+ ++C
Sbjct: 856 AFEYAMPVDGDDDDNDPVCLQCANFDGAEGLDCESPGATLASLPVREGYWRSSQESLVVHGCLNSDACAGGTQISSSDDYCKDCYEGPYCAVCAEGCCEGSSHTC 960
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI) HSP 1 Score: 126 bits (317), Expect = 1.200e-31 Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = 1
Query: 1 AFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
AF+YA+P GEE V C QC ++ A+GVDC+ PGAT SLP+R G+WR+SE L IH CLHSDAC GAT + + +DYC GY+GP CAVC G+G+G G +C
Sbjct: 891 AFEYAMPD-GEEQVT---CEQCVLLDGAEGVDCELPGATQTSLPVRAGHWRSSEESLVIHGCLHSDACVGATEIVTSDDYCDGGYEGPYCAVCAEGYGKGVGNTC 991
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE) HSP 1 Score: 124 bits (310), Expect = 1.040e-30 Identity = 53/105 (50.48%), Postives = 77/105 (73.33%), Query Frame = 1
Query: 1 AFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
AF+YAVPV G++ ++ C QC I+ A+GVDC+ PGATLASLP+R GYWR+ + T+ C+H+++C GAT +++ +DYC+ GY+GP CA C G+G G G +C
Sbjct: 366 AFEYAVPVDGDDDT-AVSCEQCVVIDGAEGVDCELPGATLASLPVREGYWRSGKESATVLACIHAESCAGATHVSTSDDYCSSGYEGPYCASCQAGYGTGIGNTC 469
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI) HSP 1 Score: 124 bits (310), Expect = 1.050e-30 Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 1
Query: 1 AFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
AF+YAVPV G++ ++ C QC I+ A+GVDC+ PGATLASLP+R GYWR+ + T+ C+H+++C GAT +++ DYC+ GY+GP CA C G+G G G +C
Sbjct: 815 AFEYAVPVDGDDDT-AVSCEQCVAIDGAEGVDCELPGATLASLPVREGYWRSGKESSTVLACIHAESCAGATQVSTAEDYCSSGYEGPYCASCQAGYGTGIGNTC 918
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE) HSP 1 Score: 100 bits (248), Expect = 2.470e-22 Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1
Query: 43 ESLECRQCADIE-DAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
ES C C D+ D GV+CDE GAT +LP++PGYWRAS + I C + DAC+G + + S +YC GY+GP CAVC G+GRG +C
Sbjct: 1062 ESACCELCTDVGGDEDGVNCDENGATTRTLPVQPGYWRASLDSVYIRQCFNEDACQGGSIVASEQEYCNAGYEGPQCAVCAPGYGRGVANAC 1153
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 1.170e-21 Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1
Query: 55 CRQCADIE-DAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
C C D++ D GV+CDE GAT +LPI+ GYWRAS + I C + DAC+G + + S +YC GY+GP CAVC G+GRG +C
Sbjct: 955 CELCTDVDGDEDGVNCDENGATTRTLPIQSGYWRASLDSVYIRQCFNEDACQGGSIVASEQEYCNAGYEGPQCAVCASGYGRGVANAC 1042
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 2.940e-21 Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 1
Query: 55 CRQCADIE-DAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
C C D++ D GVDC++ GAT +LP++ GYWRAS + I C + DAC+G + + S +YC GY+GP CAVC G+GRG +C
Sbjct: 605 CELCTDLDGDEDGVDCEDMGATTRTLPVQSGYWRASLDSVYIRQCFNEDACRGGSIVASEQEYCNAGYEGPQCAVCASGYGRGVANAC 692 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig11532.1.1 >prot_A-nodosum_M_contig11532.1.1 ID=prot_A-nodosum_M_contig11532.1.1|Name=mRNA_A-nodosum_M_contig11532.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=105bp AFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWback to top mRNA from alignment at A-nodosum_M_contig11532:6026..6655+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig11532.1.1 ID=mRNA_A-nodosum_M_contig11532.1.1|Name=mRNA_A-nodosum_M_contig11532.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=630bp|location=Sequence derived from alignment at A-nodosum_M_contig11532:6026..6655+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig11532:6026..6655+ >mRNA_A-nodosum_M_contig11532.1.1 ID=mRNA_A-nodosum_M_contig11532.1.1|Name=mRNA_A-nodosum_M_contig11532.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=315bp|location=Sequence derived from alignment at A-nodosum_M_contig11532:6026..6655+ (Ascophyllum nodosum dioecious)back to top |