mRNA_A-nodosum_M_contig1148.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1148.7.1
Unique NamemRNA_A-nodosum_M_contig1148.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1148.7.1 vs. uniprot
Match: D7FVU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU9_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 2.710e-44
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 MDATNVKQFKLDASAGGCTGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPRGYWLPVMQHGKAVLHEI 240
            MDA   K FKLDASAGGC+GMFWR+KPEM ++TSSSDWPRNGT+LKGWY  EHPGWVKIDHP GYW+PV QHGKAV+HE+
Sbjct:    1 MDAAAAKSFKLDASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYVTEHPGWVKIDHPEGYWMPVEQHGKAVMHEV 80
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BLAST of mRNA_A-nodosum_M_contig1148.7.1 vs. uniprot
Match: A0A835ZIY5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIY5_9STRA)

HSP 1 Score: 126 bits (317), Expect = 8.940e-34
Identity = 52/79 (65.82%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:    1 MDATNVKQFKLDASAGGCTGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPRGYWLPVMQHGKAVLHE 237
            MD    K+F LDA + GCTGMFWRS+P M A+ S+SDWPRNG++L GWY  EHPGWV+IDHP GYW+PV Q G  VLHE
Sbjct:    1 MDPALRKEFVLDAGSKGCTGMFWRSEPRMGATASASDWPRNGSVLHGWYVQEHPGWVRIDHPNGYWMPVEQDGHTVLHE 79
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BLAST of mRNA_A-nodosum_M_contig1148.7.1 vs. uniprot
Match: A0A835XUH0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XUH0_9CHLO)

HSP 1 Score: 123 bits (309), Expect = 1.630e-32
Identity = 52/77 (67.53%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:    4 DATNVKQFKLDASAGGCTGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPRGYWLPVMQHGKAVLH 234
            +AT V   +LDASA GCTGMFWRSKPEM+AS  + DWPRNG   KGW + EHPGWVK+DHP+ YWLP+ QHGK V H
Sbjct:    9 EATKVT-IRLDASANGCTGMFWRSKPEMNASVQAPDWPRNGATFKGWKSVEHPGWVKVDHPKDYWLPIEQHGKPVCH 84
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BLAST of mRNA_A-nodosum_M_contig1148.7.1 vs. uniprot
Match: A0A7S0S545_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S545_9CHLO)

HSP 1 Score: 124 bits (310), Expect = 3.170e-32
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:    4 DATNVKQFKLDASAGGCTGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPRGYWLPVMQHGKAVLH 234
            DA+    F LDAS  GCTGM+WRSKP+M+AS S+ DWPRNG  L+GW +  HPGWVK+DHP+GYWLP+ QHGK V+H
Sbjct:   43 DASTKINFTLDASQNGCTGMYWRSKPDMNASVSAPDWPRNGAKLQGWKSVAHPGWVKVDHPQGYWLPIEQHGKPVVH 119
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BLAST of mRNA_A-nodosum_M_contig1148.7.1 vs. uniprot
Match: A0A8J4FZJ0_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FZJ0_9CHLO)

HSP 1 Score: 123 bits (309), Expect = 3.850e-32
Identity = 49/74 (66.22%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:   13 NVKQFKLDASAGGCTGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPRGYWLPVMQHGKAVLH 234
            N    ++DAS  GCTGMFWRSKPEM+AS S+ DWPRNGT+ KGW + EHPGWVK+DHP+GYWLP+ Q+G  V H
Sbjct:   40 NKVNIRMDASKNGCTGMFWRSKPEMNASVSAPDWPRNGTVFKGWKSLEHPGWVKVDHPKGYWLPIQQYGNDVCH 113
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BLAST of mRNA_A-nodosum_M_contig1148.7.1 vs. uniprot
Match: A0A8J4G156_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G156_9CHLO)

HSP 1 Score: 122 bits (306), Expect = 1.260e-31
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:   28 KLDASAGGCTGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPRGYWLPVMQHGKAVLH 234
            ++DAS  GCTGMFWRSKPEM+AS S+ DWPRNGT+ KGW + EHPGWVK+DHP+GYWLP+ Q+G  V H
Sbjct:   50 RMDASKNGCTGMFWRSKPEMNASVSAPDWPRNGTVFKGWKSLEHPGWVKVDHPKGYWLPIQQYGNDVCH 118
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BLAST of mRNA_A-nodosum_M_contig1148.7.1 vs. uniprot
Match: A0A835TBT2_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TBT2_CHLIN)

HSP 1 Score: 121 bits (303), Expect = 1.370e-31
Identity = 48/75 (64.00%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:   10 TNVKQFKLDASAGGCTGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPRGYWLPVMQHGKAVLH 234
            T +K  +LDASA GC+GMFWRSKP+M+AS S+ DWPRNG + +GW + EHPGWVK+DH +GYW+P+ QHGK V H
Sbjct:   11 TKIK-IRLDASANGCSGMFWRSKPDMNASVSAPDWPRNGAVFQGWKSQEHPGWVKVDHEKGYWMPIEQHGKPVCH 84
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BLAST of mRNA_A-nodosum_M_contig1148.7.1 vs. uniprot
Match: A8J4I5_CHLRE (Predicted protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8J4I5_CHLRE)

HSP 1 Score: 120 bits (300), Expect = 7.810e-31
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:   10 TNVKQFKLDASAGGCTGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPRGYWLPVMQHGKAVLH 234
            T +K  +LDASA GC+GMFWRSKP+M+AS S+ DWPRNG +  GW + EHPGWVK+DH +GYW+P+ QHGK V H
Sbjct:   35 TKIK-IRLDASANGCSGMFWRSKPDMNASVSAPDWPRNGAVFLGWKSQEHPGWVKVDHEKGYWMPIEQHGKPVCH 108
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BLAST of mRNA_A-nodosum_M_contig1148.7.1 vs. uniprot
Match: A0A150GII6_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GII6_GONPE)

HSP 1 Score: 117 bits (294), Expect = 6.140e-30
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:   28 KLDASAGGCTGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPRGYWLPVMQHGKAVLH 234
            ++DAS  GCTGMFWRSKP+M+AS ++ DWPRNGT+ KGW + EHPGWVK+DHP+ YWLP+ Q+G  V H
Sbjct:   42 RMDASKNGCTGMFWRSKPDMNASVNAPDWPRNGTVFKGWKSVEHPGWVKVDHPQNYWLPIQQYGNDVCH 110
[Close]
BLAST of mRNA_A-nodosum_M_contig1148.7.1 vs. uniprot
Match: A0A250X2J7_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X2J7_9CHLO)

HSP 1 Score: 115 bits (288), Expect = 3.820e-29
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:   31 LDASAGGCTGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPRGYWLPVMQHGKAVLH 234
            LDAS GGCTGMFWRSKP M+A+ S+ DWPRNGT L+GW +  +PGWVKIDHP GYW+P+ Q+G  V+H
Sbjct:   34 LDASKGGCTGMFWRSKPSMNATASAPDWPRNGTELQGWISKANPGWVKIDHPNGYWMPISQNGHDVIH 101
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1148.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FVU9_ECTSI2.710e-4478.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZIY5_9STRA8.940e-3465.82Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835XUH0_9CHLO1.630e-3267.53Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7S0S545_9CHLO3.170e-3264.94Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A8J4FZJ0_9CHLO3.850e-3266.22Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A8J4G156_9CHLO1.260e-3169.57Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A835TBT2_CHLIN1.370e-3164.00Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A8J4I5_CHLRE7.810e-3164.00Predicted protein n=3 Tax=Chlamydomonas TaxID=3052... [more]
A0A150GII6_GONPE6.140e-3065.22Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A250X2J7_9CHLO3.820e-2967.65Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1148contigA-nodosum_M_contig1148:88665..90317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVU9
Model size794
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.34e-48
EggNOG OGs2C7IW@1|root,2SCDY@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002230.1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866551.5426736-CDS-A-nodosum_M_contig1148:88664..887351680866551.5426736-CDS-A-nodosum_M_contig1148:88664..88735Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1148 88665..88735 +
1680866551.551766-CDS-A-nodosum_M_contig1148:89112..891841680866551.551766-CDS-A-nodosum_M_contig1148:89112..89184Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1148 89113..89184 +
1680866551.5600057-CDS-A-nodosum_M_contig1148:89666..897691680866551.5600057-CDS-A-nodosum_M_contig1148:89666..89769Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1148 89667..89769 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866551.576623-UTR-A-nodosum_M_contig1148:89769..903171680866551.576623-UTR-A-nodosum_M_contig1148:89769..90317Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1148 89770..90317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1148.7.1prot_A-nodosum_M_contig1148.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1148 88665..89769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1148.7.1

>prot_A-nodosum_M_contig1148.7.1 ID=prot_A-nodosum_M_contig1148.7.1|Name=mRNA_A-nodosum_M_contig1148.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=82bp
MDATNVKQFKLDASAGGCTGMFWRSKPEMSASTSSSDWPRNGTLLKGWYA
DEHPGWVKIDHPRGYWLPVMQHGKAVLHEIK*
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mRNA from alignment at A-nodosum_M_contig1148:88665..90317+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1148.7.1 ID=mRNA_A-nodosum_M_contig1148.7.1|Name=mRNA_A-nodosum_M_contig1148.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1653bp|location=Sequence derived from alignment at A-nodosum_M_contig1148:88665..90317+ (Ascophyllum nodosum dioecious)
ATGGACGCTACCAACGTGAAGCAGTTCAAGCTGGATGCCAGCGCCGGCGG
ATGCACTGGCATGTTCTGGAGGTACGGTACGCCAACCGAAACGCGCACAG
TTCTCCAGTAAGCAACAGTCGCGAAAGCTCCTCTCTGAGTAAGAAAAAAA
GAAGAAAAAAAACGGAGGAAATGATCGACTTGTCTTCCAGCAATTGCGAG
TGCATGACTTACTTGTCCACCTCCTCCGTCGTTCTAGACTTCACCGTCGA
GAGAAAACATTTCACATTGTTGCGCTTCCCTTGCGTTCCAACTTCGAAGC
AACACATTAGGCGTCAGGTATGCTCCTTTCCCTCGAGCGGCACGCTCGTC
CATGCGACCTCATGATGTTCCTCGATGTGGTCATCGGAATTAAGCTTGAA
CCTCCCTCCTGCTCTATAACTCACGCCTTCTGCGCTGTGGCCGATCAGAT
CGAAGCCGGAAATGAGCGCAAGCACGTCCTCATCCGACTGGCCGCGCAAC
GGGACTCTACTCAAGGGTTGGTGAGCTTTGTGGTCCGCACAGGGAGATTC
CTGTTCGTTCAAATAGTCACGACGCGCGCTGATGTTTGTATGTATGAATG
GTCATCACTTTCAGCAGAGTATGGATCGACCGGGTAAGGCTGCCAATCCT
GCTCGTGGTCAGCTGAATAGGGACACATTATTTTCCCCCCTGCCTCCATT
CGCACCCCTTAGAATTTGGTCTCCCGAGACGTGTTCGGCTGTCCCGTCCC
GCGTCAGCCCGTTCATTCTCTACACTCAGGCTGAATCTGGTTTATGCTAT
GAGCCTCTTGCGGCGTTGTGTGTCCAAACAACCAGTGGTCGGGGATTGGT
TCATGGTTTCCGCCAGTCTCGCGTAGATCAATCATCTTAAAGTCATACAG
TACAATTATGCACAACGACCCCCTCCCCTCTAAATTTTACCCCAGGTACA
GTCATATCCTTGTCCTGACCCAGCCGTGCTCGATTCGATCCACCCGCGAC
AGGTACGCCGATGAACATCCGGGTTGGGTCAAGATCGATCACCCTCGGGG
CTACTGGCTGCCGGTCATGCAGCACGGGAAGGCCGTCTTGCACGAGATCA
AGTAGCGTTCAAGCACGTTTCCCGGGTCAACACTCATTGCCGCGCGAGGA
TTGTTTAGACTATTGTACGAAGCAAATCCCCTAGACATTCCATTAGAGCA
CCGTAAAAAACAAAAAAGTGGTGACCCCGCGAGGGCGGGTAGTGTAAGTA
GCCCGTGCTACTGTATATACTGTCGCAACGTACAGGGACCTGTTAAAGGC
CAGAGGGGTTTTTGAGGTCGACGGTCGATCGCGCGTGAAACCTTTCATGG
GGATGACGCCACTTACAGTAACTTGAGTTCGACTACCCACCGTCTGATGA
GCCTCGGTTGGTCGGCACCGAAGTTCATGAAAATAATTTTATGTTTTGAG
CGCTATTTAATAATTCTTTCGTGCTACTGTACTGCAGCAACGCACCAGGT
ACCTGTTAAGGCCAGAGGGGTTTTTGAGGTCGACGGTCGGTCGCGCGTGC
AATCCTTCATGGGCACGATGTGACTTACACAGGAACTTAAATTCTACTAG
CTACCGCTTCATGGGTAGCTTCGGTTGGCCGGCATCCAACTTTATGAGTA
TAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1148:88665..90317+

>mRNA_A-nodosum_M_contig1148.7.1 ID=mRNA_A-nodosum_M_contig1148.7.1|Name=mRNA_A-nodosum_M_contig1148.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at A-nodosum_M_contig1148:88665..90317+ (Ascophyllum nodosum dioecious)
ATGGACGCTACCAACGTGAAGCAGTTCAAGCTGGATGCCAGCGCCGGCGG
ATGCACTGGCATGTTCTGGAGATCGAAGCCGGAAATGAGCGCAAGCACGT
CCTCATCCGACTGGCCGCGCAACGGGACTCTACTCAAGGGTTGGTACGCC
GATGAACATCCGGGTTGGGTCAAGATCGATCACCCTCGGGGCTACTGGCT
GCCGGTCATGCAGCACGGGAAGGCCGTCTTGCACGAGATCAAGTAG
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