mRNA_A-nodosum_M_contig1142.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1142.1.1
Unique NamemRNA_A-nodosum_M_contig1142.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: D8LRJ2_ECTSI (Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ2_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 9.380e-19
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   22 AEDEEGYYAHLGCYMDKKDDRVLGMKLVRDDITAELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRHDVG--VCDKPC 258
            A D    Y HLGC++D + DRVLG KLV +++  ELCY+YC    A +MATQ+G EC C++E DL+++RH     +CD  C
Sbjct:   70 ATDSNRDYTHLGCFVDNRSDRVLGYKLVDEEVDTELCYDYCLEQNAPFMATQWGIECWCATEPDLEYERHGEAEELCDYKC 150          
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: D8LNN0_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN0_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.520e-17
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 1
Query:   43 YAHLGCYMDKKDDRVLGMKLVRDDITAELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRH-DVG-VCDKPC 258
            Y HLGC++DKK DRVLG KL  +++  E CY+YC    A  MATQ+G EC C++E DLD++RH + G +CD  C
Sbjct:   42 YTHLGCFVDKKSDRVLGNKLADEEVDTEFCYDYCEEQNAPLMATQWGIECWCANEVDLDYERHGEAGELCDYKC 115          
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: D7FZB0_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB0_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 6.020e-17
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 1
Query:   22 AEDEEGYYAHLGCYMDKKDDRVLGMKLVRDDITAELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRHDVG--VCDKPC 258
            A D    Y HLGC++D + DRVLG KLV +++  E CY+YC    A +MATQ+G EC C++E DL+++RH     +CD  C
Sbjct:   40 ATDSNRDYTHLGCFVDNQSDRVLGHKLVDEEVDTEFCYDYCLEKNAPFMATQWGIECWCATEVDLEYERHGEAEELCDYKC 120          
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: A0A6H5K2N3_9PHAE (WSC domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N3_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 7.630e-17
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 1
Query:   22 AEDEEGYYAHLGCYMDKKDDRVLGMKLVRDDITAELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRHDVG--VCDKPC 258
            A D +  Y HLGC++DKK DRV+G K+  +++  E CY+YC    A  MATQ+G EC C++E DL+++RH     +CD  C
Sbjct:   35 AADSDRNYTHLGCFVDKKSDRVMGHKIADEEVDTEFCYDYCLGENAPLMATQWGIECWCATEVDLEYERHGEAEELCDYKC 115          
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.590e-14
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   31 EEGYYAHLGCYMDKKDDRVLGMKLVRDDITAELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRHDVGVCDKPC 258
            EEGY +++GC+ D KDDRV         +T  +C EYC    A +MATQFG EC CS + ++++DRH  GVCD  C
Sbjct:    8 EEGY-SYVGCFADSKDDRVFEYMKTSPTMTTAVCLEYCLDRRATFMATQFGIECWCSVDAEIEYDRHSDGVCDCEC 82          
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: D8LJW7_ECTSI (Pathogenesis-related protein, class 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW7_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.820e-14
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   43 YAHLGCYMDKKDDRVLGMKLV-RDDITAELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRHDVGV-CDKPC 258
            Y ++GC+ D ++DR+L   L  R D++ E CYE+C   GA YMATQ+  EC CS+ +DL++DRH  G  CD  C
Sbjct:   56 YEYIGCFTDSQEDRILDDMLTSRTDMSTEKCYEHCMEMGAEYMATQWAQECFCSNNKDLEYDRHGSGAECDMSC 129          
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 6.930e-14
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   31 EEGYYAHLGCYMDKKDDRVLGMKLVRDDITAELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRHDVGVCDKPC 258
            +EGY +++GC+ D K+DRV         +T  +C EYC    A YMATQ+G EC CS + ++++DRH  GVCD  C
Sbjct:  430 DEGY-SYVGCFADSKEDRVFEYMKTSSTMTTAVCLEYCLDRRATYMATQYGYECWCSVDAEVEYDRHSDGVCDHAC 504          
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: A0A6H5JN72_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN72_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.440e-13
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 1
Query:   43 YAHLGCYMDKKDDRVLGMKLVRDDITAELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRH----------DVGVCDKPC 258
            Y H+GC+ D K+DRVL   +    +T  +CYE+C    A YMATQ+G EC CS + DLD+ RH          D G+C   C
Sbjct:  451 YTHVGCFSDNKEDRVLEAMITSSAMTGAMCYEHCVDRRATYMATQYGFECWCSHDSDLDYARHSDDLERVDGRDYGLCGTRC 532          
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: A0A6H5JLD0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD0_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.280e-7
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1
Query:  124 ELCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRHDVGV 243
            ++CYE+C+  GA YMATQFG EC CS + DLD+ RH  G 
Sbjct:    9 QMCYEHCHSEGAAYMATQFGFECLCSHDADLDYARHSEGT 48          
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Match: D8LED5_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED5_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.590e-6
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1
Query:  127 LCYEYCNVNGAFYMATQFGNECSCSSERDLDFDRHDVGV 243
            +CYE+C   GA YMATQFG EC CS + DLD+ RH   +
Sbjct:  276 MCYEHCYSEGAAYMATQFGFECWCSDDTDLDYSRHSDNI 314          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1142.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LRJ2_ECTSI9.380e-1948.15Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
D8LNN0_ECTSI1.520e-1752.70WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FZB0_ECTSI6.020e-1746.91WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K2N3_9PHAE7.630e-1745.68WSC domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5JMV6_9PHAE2.590e-1447.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJW7_ECTSI2.820e-1447.30Pathogenesis-related protein, class 1 n=1 Tax=Ecto... [more]
D8LED7_ECTSI6.930e-1444.74EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JN72_9PHAE4.440e-1342.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JLD0_9PHAE1.280e-757.50WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LED5_ECTSI2.590e-656.41EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1142contigA-nodosum_M_contig1142:5270..6123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRJ2
PFAMsVWD,WSC
Model size259
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.54e-19
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Descriptionprotein xylosyltransferase activity
Cds size258
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866546.75158-CDS-A-nodosum_M_contig1142:5269..53251680866546.75158-CDS-A-nodosum_M_contig1142:5269..5325Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1142 5270..5325 +
1680866546.7694142-CDS-A-nodosum_M_contig1142:5739..58091680866546.7694142-CDS-A-nodosum_M_contig1142:5739..5809Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1142 5740..5809 +
1680866546.844549-CDS-A-nodosum_M_contig1142:5991..61231680866546.844549-CDS-A-nodosum_M_contig1142:5991..6123Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1142 5992..6123 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1142.1.1prot_A-nodosum_M_contig1142.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1142 5270..6123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1142.1.1

>prot_A-nodosum_M_contig1142.1.1 ID=prot_A-nodosum_M_contig1142.1.1|Name=mRNA_A-nodosum_M_contig1142.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
STSGLAPAEDEEGYYAHLGCYMDKKDDRVLGMKLVRDDITAELCYEYCNV
NGAFYMATQFGNECSCSSERDLDFDRHDVGVCDKPC
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mRNA from alignment at A-nodosum_M_contig1142:5270..6123+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1142.1.1 ID=mRNA_A-nodosum_M_contig1142.1.1|Name=mRNA_A-nodosum_M_contig1142.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=854bp|location=Sequence derived from alignment at A-nodosum_M_contig1142:5270..6123+ (Ascophyllum nodosum dioecious)
TCGACGAGTGGCTTGGCGCCTGCCGAAGACGAAGAGGGGTACTACGCCCA CCTCGGGTGAGAAAAGGTCGCGACCCACCCATCCACTTGTCGTGAAACTG CTGTATATATCTCCAGCCCAGCAGGGTCATATTGTTCAGTAACATACACT TGATCACTGTGTAGTCACAAAGCACTGCCTTCTAAATACCGCCCTTACAT TGTTTGTAAACATCTTTTCACTCCCATAGAGGTATCAATGTACAATGCTA CAATGAGGTGCGCCTTGACGTTGAGGAATCGTGCTATTTCTATGCTGTCC CATTGGGCAACGTTTCACTTGCGGCGACACCAGTATCCCCTCAGCGATGC AGAAGCTTTGATTCCACCCTGCAGATAGCCCCCTGCCTAATCGACCTTGA TGTGACAACCAAGGTCTCAACATCACTCTAAGATTTCCTGTATGCCACGT GGGTTTTGTTGGCGGAACAGGTGTTACATGGACAAGAAAGACGATAGGGT TCTGGGGATGAAACTGGTGCGGGACGATATAACGGCAGAGGTAAGGTCGA GGGTTCTCTTGTCTAGTTTGTTTGAGAAGATTCAATTTCCACAGAGCTTC CACAACAATATATAGCCGAGACCGAGACCAAAACGCTGTAGGCATCTGCC TTGACTCATTCATTAGACCGCGCTCTCCCTTTTGCCGATGGCTTGGCTTG CTTGTAACTACAACTAAAACAGCTGTGCTACGAGTACTGTAACGTCAACG GGGCTTTCTATATGGCGACACAGTTCGGAAATGAGTGCTCCTGCAGCAGC GAGAGGGATCTCGACTTCGACCGCCATGACGTCGGGGTGTGCGACAAACC CTGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1142:5270..6123+

>mRNA_A-nodosum_M_contig1142.1.1 ID=mRNA_A-nodosum_M_contig1142.1.1|Name=mRNA_A-nodosum_M_contig1142.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig1142:5270..6123+ (Ascophyllum nodosum dioecious)
TCGACGAGTGGCTTGGCGCCTGCCGAAGACGAAGAGGGGTACTACGCCCA
CCTCGGGTGTTACATGGACAAGAAAGACGATAGGGTTCTGGGGATGAAAC
TGGTGCGGGACGATATAACGGCAGAGCTGTGCTACGAGTACTGTAACGTC
AACGGGGCTTTCTATATGGCGACACAGTTCGGAAATGAGTGCTCCTGCAG
CAGCGAGAGGGATCTCGACTTCGACCGCCATGACGTCGGGGTGTGCGACA
AACCCTGC
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