mRNA_A-nodosum_M_contig114.21.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig114.21.1
Unique NamemRNA_A-nodosum_M_contig114.21.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig114.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig114contigA-nodosum_M_contig114:408855..409876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size525
Hectar predicted targeting categorymitochondrion
Exons2
Cds size480
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866544.1870382-UTR-A-nodosum_M_contig114:408854..4088961680866544.1870382-UTR-A-nodosum_M_contig114:408854..408896Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig114 408855..408896 -
1680866544.2229905-UTR-A-nodosum_M_contig114:409873..4098761680866544.2229905-UTR-A-nodosum_M_contig114:409873..409876Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig114 409874..409876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866544.2034552-CDS-A-nodosum_M_contig114:408896..4093061680866544.2034552-CDS-A-nodosum_M_contig114:408896..409306Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig114 408897..409306 -
1680866544.214598-CDS-A-nodosum_M_contig114:409803..4098731680866544.214598-CDS-A-nodosum_M_contig114:409803..409873Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig114 409804..409873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig114.21.1prot_A-nodosum_M_contig114.21.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig114 408897..409873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig114.21.1

>prot_A-nodosum_M_contig114.21.1 ID=prot_A-nodosum_M_contig114.21.1|Name=mRNA_A-nodosum_M_contig114.21.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=160bp
MARQVMTGGRGKRALAAKLHHLRECSRRCKVGTPEPLLSHLSSTKPRWLN
STGTRSPSSRPCPRRETALPACSAVGTCSGGSTPGDPCFVPPVQACSPLR
AIAPKFGPVQALLEPWSPTQQLEPSVVGVAPPRKRSGRVRIAVILTPRVI
TRLLCTTVG*
back to top

mRNA from alignment at A-nodosum_M_contig114:408855..409876-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig114.21.1 ID=mRNA_A-nodosum_M_contig114.21.1|Name=mRNA_A-nodosum_M_contig114.21.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1022bp|location=Sequence derived from alignment at A-nodosum_M_contig114:408855..409876- (Ascophyllum nodosum dioecious)
TGGATGGCCAGGCAGGTGATGACGGGGGGGAGAGGGAAGAGAGCCTTGGC
GGCGAAATTACACCATCTGCGAGGCGAGTGCTTTCGTTTGCGTCCTCGTT
TGCTTTGTAAAGGCCTTTGCAGGCGGTTCGAAATCGTGATACACTACATT
TTCTGCCCTTGTCAGGAACGGGTGTCAACAGCGCCAATTCCGACTGGTTC
GATCGTTGTTGGATGTACGTTTCGTATTGCTAATACTAAGGCATTGTGTG
TTATTTGATCCTTAGAATATATGTCCTATTTAGTACTTCCGATTGTAAGG
CGTGAACCGGGGAGATATGGGAAGATCCTTTGTGACCACAGGCAGGATGG
TAATGATGAGGTCCATCGGCTATAAGTGAGATGAAAGAAAAAAAAGAAAA
AAAAGTACATGTCCTGAATCGCCATATTTTTCCGGTCAGTTGCATGTAAA
GCGATGTGCCCCTCAAAGGCGACGATGAAAACAAATCTTACCATATGTCA
CCTCAAATGTGCCCACCCGGCACCTAATTGTACTTTCCACTGTGCTTGCA
ACCCGATGGCGTTGGTGCAGAATGTTCGCGCAGATGTAAGGTGGGAACGC
CGGAACCCCTTCTTTCACATCTGTCTTCAACAAAGCCGAGATGGCTAAAT
TCGACAGGAACGCGCTCTCCTTCCTCCCGACCATGCCCGCGTCGGGAAAC
CGCACTCCCGGCCTGTTCGGCTGTGGGTACTTGTTCGGGCGGGTCCACCC
CGGGTGACCCCTGCTTCGTGCCGCCGGTTCAAGCTTGCAGCCCTTTACGG
GCGATTGCACCTAAGTTTGGTCCCGTTCAGGCGCTGCTAGAACCCTGGAG
CCCTACGCAGCAGCTTGAACCATCCGTCGTAGGAGTTGCCCCGCCCAGAA
AGCGAAGCGGTCGTGTCAGGATTGCGGTCATCCTTACACCGCGGGTTATT
ACGCGGCTGCTATGTACCACAGTAGGTTAGGTGGGAAATACACGTGCTTA
GTCAAAGCACGCTTCCCGGATA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig114:408855..409876-

>mRNA_A-nodosum_M_contig114.21.1 ID=mRNA_A-nodosum_M_contig114.21.1|Name=mRNA_A-nodosum_M_contig114.21.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at A-nodosum_M_contig114:408855..409876- (Ascophyllum nodosum dioecious)
ATGGCCAGGCAGGTGATGACGGGGGGGAGAGGGAAGAGAGCCTTGGCGGC
GAAATTACACCATCTGCGAGAATGTTCGCGCAGATGTAAGGTGGGAACGC
CGGAACCCCTTCTTTCACATCTGTCTTCAACAAAGCCGAGATGGCTAAAT
TCGACAGGAACGCGCTCTCCTTCCTCCCGACCATGCCCGCGTCGGGAAAC
CGCACTCCCGGCCTGTTCGGCTGTGGGTACTTGTTCGGGCGGGTCCACCC
CGGGTGACCCCTGCTTCGTGCCGCCGGTTCAAGCTTGCAGCCCTTTACGG
GCGATTGCACCTAAGTTTGGTCCCGTTCAGGCGCTGCTAGAACCCTGGAG
CCCTACGCAGCAGCTTGAACCATCCGTCGTAGGAGTTGCCCCGCCCAGAA
AGCGAAGCGGTCGTGTCAGGATTGCGGTCATCCTTACACCGCGGGTTATT
ACGCGGCTGCTATGTACCACAGTAGGTTAG
back to top