mRNA_A-nodosum_M_contig1139.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1139.8.1
Unique NamemRNA_A-nodosum_M_contig1139.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1139.8.1 vs. uniprot
Match: D7FW29_ECTSI (Abhydrolase_5 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW29_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 3.330e-116
Identity = 184/320 (57.50%), Postives = 233/320 (72.81%), Query Frame = 3 
Query: 1050 MLEDVIFVLKDFLLWARRRLFLLAYSATALSIMVPFLFVKAIFDRAHGNNWFADPLGKPGLFQYGVELMAFALGTVFLRTKKATEDAYAATKSASIRGSGDGVTVVLMEDYLEFQSPQQRDPAETDAKGDRSLVGVIIIPGALISPFAYSILARDLARKGYPSFVLRLPFDLAFYGWSTAGRIIKRPHKQGQVPAPTKWVLLGHSLGASGVQRFTDARPECVDGMVFLGGGHLIAGNLAKLDIPSLLIWGSRDPFTPTKMLQKAKKKMPMGADSVVIPGGNHRGFASYSRQALDWEATITPEEQRQKTVEALVEFIEQKV 2009
            M +D  FV KD+L+W +RR  LL YS+     MVPF+F KA+   A G  WFADP GKP L  YG +L+ FA+    LR+K AT+ AY ATKS +I   GDG+ V + +DY+EFQ      P E   KGD   VGVII+PG L+SPFAYSILAR LA++GYP+FVLRLPF+LAFYGW+T+G+IIKR   +     PTKWVL+GHS+G  GV+ FT+ARPECV+G+V++GGG+   G +A LD+PSL+I GSRDPFTP K +QKA  K P G ++ ++ GGNHRGFASY RQ LDWEATI+P+EQ +  +EAL EFIE+KV
Sbjct:    1 MFDDAWFVFKDYLVWCKRRTALLFYSSV-FWCMVPFMFGKAMIHHARGKGWFADPRGKPPLLTYGRDLVEFAMKFTLLRSKPATDLAYEATKSVAISTQGDGIMVKMTDDYMEFQ------PKE--GKGDGK-VGVIIVPGGLVSPFAYSILARSLAQRGYPTFVLRLPFNLAFYGWTTSGKIIKRTQTEDAPKPPTKWVLVGHSMGTLGVELFTEARPECVNGVVYMGGGNKPTGKIANLDLPSLVIRGSRDPFTPEKDMQKAVDKWPKGTETCIVEGGNHRGFASYGRQPLDWEATISPDEQMRIVLEALTEFIERKV 310
[Close]
BLAST of mRNA_A-nodosum_M_contig1139.8.1 vs. uniprot
Match: A0A6H5JK92_9PHAE (Abhydrolase_5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK92_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 1.860e-73
Identity = 144/339 (42.48%), Postives = 197/339 (58.11%), Query Frame = 3 
Query: 1050 MLEDVIFVLKDFLLWARRRLFLLAYSATALSIMVPFLFVKAIFDRAHGNNWFADPLGKPGLFQYGVELMAFALGTVFLRTKKATEDAYAATK--SASIRGS----GDGVTVVLMEDYLEFQSPQQRDPA--ETDAKGDRSLVGVIIIPGALISPFAYSILARDLARKGYPSFVLRLPFDLAFYGWSTAGRIIKR--PHKQGQ---------VPAPTKWVLLGHSLGASGVQRFTDARPECVDGMVFLGGGHLIAGNLAKLDIPSLLIWGSRDPFTPTKMLQKAKKKMPMGADSVVIPGGNHRGFASYSRQALDWEATITPEEQRQKTVEALVEFIEQKV 2009
            ML     V +  L W  RR     +S T     VP    K++ DR  G  +++DPLGKP L  +   L  F  G + L  K  T++A AA +  ++S RGS    GDGVTV+    YLEF  P +      E  A G+    GV+I PGAL+ P AY+ LAR +ARKGYPS++LR  F+LA  GW T   II R  P   G+         V  PTKWVL GHS+G  G++ F    PE VDG+V++G G+ I   +   ++P++++ GSRDP+ P + L ++  K+P GA+ VV+ GG+HRGF SY  Q LDW+ATIT +EQR   VEAL +FI+++V
Sbjct:    5 MLTQAADVARRGLGWLARRGASFWFSFTFSLSFVPSQMWKSVGDRRDGVGYYSDPLGKPSLLSHWRGLAEFTFGAITLLPKAPTDEALAAARVTASSARGSAGWEGDGVTVMDNGSYLEFLPPPEAQACGEEDTASGNDHGTGVVIFPGALVPPSAYAPLARTMARKGYPSYILRFEFNLATKGWETTSEIISRSAPAADGEERGASCSAVVSRPTKWVLAGHSMGTVGIEMFYTEHPESVDGVVYMGSGNKIGDAMKGSEVPAMVLRGSRDPYVPAEALARSAHKLPKGAEIVVVEGGSHRGFGSYKSQPLDWQATITEQEQRGIIVEALTDFIDRRV 343
[Close]
BLAST of mRNA_A-nodosum_M_contig1139.8.1 vs. uniprot
Match: D7FXM1_ECTSI (Abhydrolase_5 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM1_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 2.560e-47
Identity = 111/278 (39.93%), Postives = 152/278 (54.68%), Query Frame = 3 
Query: 1092 WARRRLFLLAYSATALSIMVPFLFVKAIFDRAHGNNWFADPLGKPGLFQYGVELMAFALGTVFLRTKKATEDAYAA---TKSASIRG----SGDGVTVVLMEDYLEFQSPQQRDPA-ETDA-KGDRSLVGVIIIPGALISPFAYSILARDLARKGYPSFVLRLPFDLAFYGWSTAGRIIKR--PHKQGQVPA---------PTKWVLLGHSLGASGVQRFTDARPECVDGMVFLGGGHLIAGNLAKLDIPSLLIWGSRDPFTPTKMLQKAKKKMPMGA 1865
            W  RR      S T     VP    K++ DR  G  +++DPLGKP L  +   L  F  G++ L  K +T++A AA   T S++ RG     GDGV V+    YLEF  P +     E D   G     GV+I PGAL+ P AY+ LAR +ARKGYPS++LR  F+LA  GW     II R  P   G+            PTKWVL GHS+G  G++ F    PE VDG+V++G G++I   L   ++P++++ GSRDPF P ++ Q A+KK  + A
Sbjct:   19 WLARRGVSFWRSFTFALSFVPNQLWKSVGDRRDGVGYYSDPLGKPSLLSHWRGLAEFTFGSITLLPKASTDEALAAARVTASSTARGPAGWEGDGVAVMDTGSYLEFLPPPEAQACGEADTTSGKNHRTGVVIFPGALVPPSAYAPLARTMARKGYPSYILRFEFNLATKGWEATSEIISRSAPAADGEGRGASCSAVGSRPTKWVLAGHSMGTVGIEMFYAEHPEIVDGVVYMGSGNMIGDALKGSEVPAMVLRGSRDPFVPAEV-QTARKKSVLSA 295
[Close]
BLAST of mRNA_A-nodosum_M_contig1139.8.1 vs. uniprot
Match: J2QW60_9BACL (Dienelactone hydrolase-like enzyme n=4 Tax=Brevibacillus TaxID=55080 RepID=J2QW60_9BACL)

HSP 1 Score: 134 bits (338), Expect = 1.150e-31
Identity = 77/222 (34.68%), Postives = 123/222 (55.41%), Query Frame = 3 
Query: 1347 GDGVTVVLMEDYLEFQSPQQRDPAETDAKGDRSLVGVIIIPGALISPFAYSILARDLARKGYPSFVLRLPFDLAFYGWSTAGRIIKRPHKQGQVPAPTKWVLLGHSLGASGVQRFTDARPECVDGMVFLGGGHLIAGNLAKLDIPSLLIWGSRDPFTPTKMLQKAKKKMPMGADSVVIPGGNHRGFASYSRQALDWEATITPEEQRQKTVEALVEFIEQKVV 2012
            G+G+TV+   D++ F+  + R+P            G+I+ PGAL++P +Y+ LAR LA  GY  F+ R+P +LA      A +++K   +Q        +V+ GHSLG +   R+  ++ E +DG++FLG      G+L + D+P L + GSRD     K  ++ K+ +P     + I GGNH  F SY  Q  D  A ITP+EQ Q+TV A+ +++   V+
Sbjct:   43 GEGITVIDTGDWIAFEGGEAREP------------GLILYPGALVTPESYAPLARTLAGSGYRVFIARMPLNLAITDVERANQVLKAYPQQS-------FVIGGHSLGGAMAARYAASQLERIDGVIFLGAYPDKRGDLKEADVPVLSLLGSRDGVIDRKKYEENKQFLPERTVYMSIEGGNHAQFGSYGAQEGDQPAAITPQEQWQQTVAAIKDWLLTDVI 245
[Close]
BLAST of mRNA_A-nodosum_M_contig1139.8.1 vs. uniprot
Match: F8FHE7_PAEMK (Abhydrolase_5 domain-containing protein n=3 Tax=Paenibacillus mucilaginosus TaxID=61624 RepID=F8FHE7_PAEMK)

HSP 1 Score: 125 bits (314), Expect = 2.860e-28
Identity = 84/242 (34.71%), Postives = 124/242 (51.24%), Query Frame = 3 
Query: 1263 ALGTVFLRTKKATEDAYAATKSASIRGSGDGVTVVLMEDYLEFQSPQQRDPAETDAKGD-RSLVGVIIIPGALISPFAYSILARDLARKGYPSFVLRLPFDLAFYGWSTAGRIIKRPHKQGQVPAPTKWVLLGHSLGASGVQRFTDARPECVDGMVFLGGGHLIAGNLAKLDIPSLLIWGSRDPFTPTKMLQKAKKKMPMGADSVVIPGGNHRGFASYSRQALDWEATITPEEQRQKTVEAL 1985
            A G V+LR  +A + A  A   ++      GV V     +L F+      P   +  G  + L GVI+ PG L+ P +Y+ LA  LA +GYP ++ R+P  LA +G + A  +++R   QG       +V+ GHSLG S   RF  A P+ + G+ FL       G+L    +P L + G+ D     + ++  +  +P  A  + + GGNH GF SY  Q  D EA I PEEQ ++TVEAL
Sbjct:   32 AAGFVYLRPYEADDAARLAMMGSA------GVEVAKEAHWLRFE------PGSGETGGAAKPLPGVILYPGGLVQPESYAPLASRLAEEGYPVYIARMPLSLAVFGQNRAEELLQR-EPQGD------FVIGGHSLGGSMAARFAAAHPDRLRGVFFLAAYADEGGSLRDAGLPVLSLVGTNDGVLNRERMEAGRAYVPGDASYLSMEGGNHAGFGSYGPQRGDGEAAILPEEQWERTVEAL 254
[Close]
BLAST of mRNA_A-nodosum_M_contig1139.8.1 vs. uniprot
Match: A0A410WS13_9BACL (Alpha/beta hydrolase n=5 Tax=Paenibacillus TaxID=44249 RepID=A0A410WS13_9BACL)

HSP 1 Score: 124 bits (310), Expect = 7.220e-28
Identity = 72/218 (33.03%), Postives = 113/218 (51.83%), Query Frame = 3 
Query: 1344 SGDGVTVVLMEDYLEFQSPQQRDPAETDAKGDRSLVGVIIIPGALISPFAYSILARDLARKGYPSFVLRLPFDLAFYGWSTAGRIIKRPHKQGQVPAPTKWVLLGHSLGASGVQRFTDARPECVDGMVFLGGGHLIAGNLAKLDIPSLLIWGSRDPFTPTKMLQKAKKKMPMGADSVVIPGGNHRGFASYSRQALDWEATITPEEQRQKTVEALVEFI 1997
            SG GVTV   +D   ++  + ++P            GVI  PG L+ P +Y+ LAR+LAR+G+ + V+++P +LA  G   A  +++    +        +V+ GHSLG     R+    PE + G+ FL       G+L    +P L + GS D        +K KK +P  A  + +PGGNH  F SY  Q  D  A+I+PEEQ ++T EA+ +++
Sbjct:   46 SGGGVTVTDSKDVTVYEGAEPKEP------------GVIFYPGGLVKPESYAPLARELARRGHRTVVVKMPLNLAVLGGGRASAVLEAHPGES-------FVIGGHSLGGVMAARYAAEHPEGLRGVFFLASYADDKGSLRDKGLPVLSVTGSEDGVLNRDSFEKNKKNLPEDAKLLTLPGGNHGQFGSYGPQKGDRAASISPEEQTRRTAEAITDWM 244
[Close]
BLAST of mRNA_A-nodosum_M_contig1139.8.1 vs. uniprot
Match: UPI001AEB9998 (alpha/beta hydrolase n=1 Tax=Methanobacterium aggregans TaxID=1615586 RepID=UPI001AEB9998)

HSP 1 Score: 121 bits (303), Expect = 5.300e-27
Identity = 67/188 (35.64%), Postives = 103/188 (54.79%), Query Frame = 3 
Query: 1437 DRSLVGVIIIPGALISPFAYSILARDLARKGYPSFVLRLPFDLAFYGWSTAGRIIKRPHKQGQVPAPTKWVLLGHSLGASGVQRFTDARPECVDGMVFLGGGHLIAGNLAKLDIPSLLIWGSRDPFTPTKMLQKAKKKMPMGADSVVIPGGNHRGFASYSRQALDWEATITPEEQRQKTVEALVEFIE 2000
            ++S  G+II PGA I   AYS++A  LA+KGY + ++++PF+LAF+G   AG +I    K G++    +WV+ GHSLG      +     + + G+++L      + N +     +L I GS D     + + K   K P     + IPGGNH  F  Y  QA D  +TIT E+Q+  TV+ +V F+E
Sbjct:   66 NKSTTGIIIYPGAKIQAEAYSVMASKLAQKGYTTIIVKMPFNLAFFGSDKAGAVIA---KHGEID---EWVIGGHSLGGVFASEYAMKHQDKIRGVIYLAAYP--STNASNATFKALSIRGSLDGLATAEDISKNLDKFPANTTFITIPGGNHYNFGDYGVQAGDNNSTITREKQQDITVDYIVRFVE 245
[Close]
BLAST of mRNA_A-nodosum_M_contig1139.8.1 vs. uniprot
Match: D0WID2_SLAES (Abhydrolase_5 domain-containing protein n=1 Tax=Slackia exigua (strain ATCC 700122 / DSM 15923 / CIP 105133 / JCM 11022 / KCTC 5966 / S-7) TaxID=649764 RepID=D0WID2_SLAES)

HSP 1 Score: 120 bits (300), Expect = 1.540e-26
Identity = 63/190 (33.16%), Postives = 104/190 (54.74%), Query Frame = 3 
Query: 1437 DRSLVGVIIIPGALISPFAYSILARDLARKGYPSFVLRLPFDLAFYGWSTAGRIIKRPHKQGQVPAPTKWVLLGHSLGASGVQRFTDARPECVDGMVFLGGGHLIAGNLAKLDIPSLLIWGSRDPFTPTKMLQKAKKKMPMGADSVVIPGGNHRGFASYSRQALDWEATITPEEQRQKTVEALVEFIEQK 2006
            D +  G+I+ PGA +   AY+ LA D+A +GY   + ++P DLA +    A  I          P    W + GHSLG +   ++  + PE + G+V L      A +++  D+ +L I+G++D       L+K    +P  + + +I GGNH GF SY  Q+ D +A+I PE+Q+Q+T +A+ +FIE +
Sbjct:   71 DGATTGIILYPGAKVDADAYTPLAYDIAARGYCCVIAKMPLDLAMFDIDAASDIAAAH------PEIDSWWIGGHSLGGAMAAQYASSHPEDLRGVVLLASYS--ATDISDTDLSALTIYGTQDGVLDRDRLEKNAANLPTDSQTAIIDGGNHAGFGSYGVQSGDGDASIAPEDQQQRTADAIADFIETR 252
[Close]
BLAST of mRNA_A-nodosum_M_contig1139.8.1 vs. uniprot
Match: A0A7L4P024_9EURY (Alpha/beta hydrolase n=1 Tax=Methanobacteriaceae archaeon TaxID=2099680 RepID=A0A7L4P024_9EURY)

HSP 1 Score: 119 bits (298), Expect = 2.280e-26
Identity = 64/189 (33.86%), Postives = 101/189 (53.44%), Query Frame = 3 
Query: 1437 DRSLVGVIIIPGALISPFAYSILARDLARKGYPSFVLRLPFDLAFYGWSTAGRIIKRPHKQGQVPAPTKWVLLGHSLGASGVQRFTDARPECVDGMVFLGGGHLIAGNLAKLDIPSLLIWGSRDPFTPTKMLQKAKKKMPMGADSVVIPGGNHRGFASYSRQALDWEATITPEEQRQKTVEALVEFIEQ 2003
            ++S  G+II PGA +   +YS++A  LA  GY + ++++PF+LAF+G + A  +IK        P    WV+ GHSLG      +     E + G+++L      + N +     +L I GS D  T    +     K P+    + I GGNH  F  Y  QA D  +TIT EEQ+Q+T+ A+++FI++
Sbjct:   63 NQSSTGIIIYPGAKVEAESYSVIASHLAENGYTTIIVKMPFNLAFFGTNKADDVIKNH------PEIDSWVIAGHSLGGVFASEYAVKNQEKIKGVIYLAAYP--SSNASNASFKALSIRGSLDNLTLPDDISANFDKFPVNTTFLTIEGGNHYNFGDYGIQAQDNNSTITREEQQQQTINAIIQFIKK 243
[Close]
BLAST of mRNA_A-nodosum_M_contig1139.8.1 vs. uniprot
Match: UPI000AACA427 (alpha/beta hydrolase n=1 Tax=Methanobacterium formicicum TaxID=2162 RepID=UPI000AACA427)

HSP 1 Score: 117 bits (293), Expect = 2.980e-26
Identity = 63/187 (33.69%), Postives = 101/187 (54.01%), Query Frame = 3 
Query: 1440 RSLVGVIIIPGALISPFAYSILARDLARKGYPSFVLRLPFDLAFYGWSTAGRIIKRPHKQGQVPAPTKWVLLGHSLGASGVQRFTDARPECVDGMVFLGGGHLIAGNLAKLDIPSLLIWGSRDPFTPTKMLQKAKKKMPMGADSVVIPGGNHRGFASYSRQALDWEATITPEEQRQKTVEALVEFIE 2000
            ++  G+II PG  +   +YSI+A  LA  GY + ++R+PF+LAF+G   A  +I         P  + WV++GHSLG      +    PE + G+++L      + N +     +L + GSRD  T  + + K   K P       I GGNH  F +Y  Q+ D  +TIT EEQ+ +T++A++EF++
Sbjct:   16 KNSTGIIIYPGGKVQAESYSIIASKLAENGYITVIVRMPFNLAFFGSEKANTVIANH------PEISSWVMVGHSLGGVFASDYAVNHPEKIRGVIYLASYP--SANASNATFKALSLRGSRDNLTQPEDISKNLDKFPKNTLFTTIEGGNHYNFGNYGTQSGDNNSTITREEQQNQTLKAILEFLK 194
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1139.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW29_ECTSI3.330e-11657.50Abhydrolase_5 domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JK92_9PHAE1.860e-7342.48Abhydrolase_5 domain-containing protein n=1 Tax=Ec... [more]
D7FXM1_ECTSI2.560e-4739.93Abhydrolase_5 domain-containing protein n=1 Tax=Ec... [more]
J2QW60_9BACL1.150e-3134.68Dienelactone hydrolase-like enzyme n=4 Tax=Breviba... [more]
F8FHE7_PAEMK2.860e-2834.71Abhydrolase_5 domain-containing protein n=3 Tax=Pa... [more]
A0A410WS13_9BACL7.220e-2833.03Alpha/beta hydrolase n=5 Tax=Paenibacillus TaxID=4... [more]
UPI001AEB99985.300e-2735.64alpha/beta hydrolase n=1 Tax=Methanobacterium aggr... [more]
D0WID2_SLAES1.540e-2633.16Abhydrolase_5 domain-containing protein n=1 Tax=Sl... [more]
A0A7L4P024_9EURY2.280e-2633.86Alpha/beta hydrolase n=1 Tax=Methanobacteriaceae a... [more]
UPI000AACA4272.980e-2633.69alpha/beta hydrolase n=1 Tax=Methanobacterium form... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1139contigA-nodosum_M_contig1139:69909..75431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FW29
PFAMsAbhydrolase_5
Model size3180
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons8
Evalue7.61e-125
EggNOG OGs2EWUG@1|root,2SYKF@2759|Eukaryota
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-01_003150.1
DescriptionAlpha/beta hydrolase family
Cds size969
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1139.8.1prot_A-nodosum_M_contig1139.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1139 70958..74269 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866542.2864175-UTR-A-nodosum_M_contig1139:69908..709571680866542.2864175-UTR-A-nodosum_M_contig1139:69908..70957Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1139 69909..70957 +
1680866542.4477499-UTR-A-nodosum_M_contig1139:74269..754311680866542.4477499-UTR-A-nodosum_M_contig1139:74269..75431Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1139 74270..75431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866542.2976384-CDS-A-nodosum_M_contig1139:70957..710651680866542.2976384-CDS-A-nodosum_M_contig1139:70957..71065Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1139 70958..71065 +
1680866542.3134007-CDS-A-nodosum_M_contig1139:71548..717521680866542.3134007-CDS-A-nodosum_M_contig1139:71548..71752Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1139 71549..71752 +
1680866542.3275275-CDS-A-nodosum_M_contig1139:72082..721751680866542.3275275-CDS-A-nodosum_M_contig1139:72082..72175Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1139 72083..72175 +
1680866542.3369563-CDS-A-nodosum_M_contig1139:72851..729631680866542.3369563-CDS-A-nodosum_M_contig1139:72851..72963Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1139 72852..72963 +
1680866542.3504763-CDS-A-nodosum_M_contig1139:73178..733001680866542.3504763-CDS-A-nodosum_M_contig1139:73178..73300Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1139 73179..73300 +
1680866542.3588324-CDS-A-nodosum_M_contig1139:73513..736511680866542.3588324-CDS-A-nodosum_M_contig1139:73513..73651Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1139 73514..73651 +
1680866542.366876-CDS-A-nodosum_M_contig1139:73871..739821680866542.366876-CDS-A-nodosum_M_contig1139:73871..73982Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1139 73872..73982 +
1680866542.4366043-CDS-A-nodosum_M_contig1139:74188..742691680866542.4366043-CDS-A-nodosum_M_contig1139:74188..74269Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1139 74189..74269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1139.8.1

>prot_A-nodosum_M_contig1139.8.1 ID=prot_A-nodosum_M_contig1139.8.1|Name=mRNA_A-nodosum_M_contig1139.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=323bp
MLEDVIFVLKDFLLWARRRLFLLAYSATALSIMVPFLFVKAIFDRAHGNN
WFADPLGKPGLFQYGVELMAFALGTVFLRTKKATEDAYAATKSASIRGSG
DGVTVVLMEDYLEFQSPQQRDPAETDAKGDRSLVGVIIIPGALISPFAYS
ILARDLARKGYPSFVLRLPFDLAFYGWSTAGRIIKRPHKQGQVPAPTKWV
LLGHSLGASGVQRFTDARPECVDGMVFLGGGHLIAGNLAKLDIPSLLIWG
SRDPFTPTKMLQKAKKKMPMGADSVVIPGGNHRGFASYSRQALDWEATIT
PEEQRQKTVEALVEFIEQKVVP*
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mRNA from alignment at A-nodosum_M_contig1139:69909..75431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1139.8.1 ID=mRNA_A-nodosum_M_contig1139.8.1|Name=mRNA_A-nodosum_M_contig1139.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5523bp|location=Sequence derived from alignment at A-nodosum_M_contig1139:69909..75431+ (Ascophyllum nodosum dioecious)
CTCGTCCACCGCGCACGGATCCGCGGGTCGATCTCGGCCGACAGGTTTGG
GGTTTCAGTAAAGGCGCTCCCCCAATAGGTGAAGAAGTTTGTCTGATGAT
ACTGTTGCCCCCGTAGCGTCGAAGACTACCTGCGTTGTCGACCCACGCGG
GATTGGCGTTCATTCACATGACAGTCTCCGTCTTGCTCTCAGAGACGGTC
AGAACGGTATTATCCTGTCGACCCTAGGCGTCCATCATTGGGGAGCCCAT
ATCAGCCCTAATGTGGATCGTTTGTTCTAGCAGCCAATGTTTCCAACCAA
ACGTTTCTATCAAATGCCCCTGAGGATGATCGAAAGGCTTGTATGCGCTC
AGACTTTTATTTTCAAATATCTTGTACTTAATCCGTTAGTTCGTTCTTAA
CTACGGTACTCGTGGAGCATGCTGCTTCAACCAATACTCGGGCGGAAGGA
CAACACGCGCAGAACGAAAGCGGCAGACTCGGCTACATTGCCTGTCTGTG
ACTATTAGCGCTTGCCGATATCTGCACCACGTGACAACACACCGGGCAGT
CGGCGCAGTGGTTACGGAGCGATCAGAGAATCGACGTAGACTCGTTCGCT
GGAGGCGTTCCCAAGGATCCCCCGGCTATCCGCAACAAACCTTCAGGACA
CTCTAAAGTACCGTACCAATCGCCCCCTACAGGCATCTAGTTATCGAACC
TGGGCCATTTTCGGGCGAAAATCGATCGCAGGGTAGCGTTCGGCCGGATC
ATAGCTAACGCTCGCATCCTTGCGTTTTCACATTTACATGGAAAGGAAAG
ACGTGGTCTGGGTGACAGGGAACTACAGGTAGAGCTCTTTTGGCAGTTTG
TACTTTCGGAATACCGATGCAACTACCGTACCTGGTAGTGTGCCAACTTG
GCAGCCATACCAGCTGTACGTTCCCGATACGTTGGGATGTTCCGTCCGGA
GCTTAGCATTGCTTTAAAAAATAAACGAATAAAATTGAATGTCTCGCTCA
AAAAGCTCCCCCGCCGCGTGCTTCACGATGATCCCTTTAAAGGACAGTCA
TGCTCGAGGACGTGATTTTCGTGTTGAAGGATTTCTTGTTATGGGCCAGG
CGCCGCTTGTTCCTCCTGGCGTACAGCGCGACGGCGCTTTCCATCATGGT
TCCTTTCGTGAGTCAATTCCAATAGGTTCCAATCGGTCCCAGTAGCCTCT
ATAGTTGACGCGAGTAAAAAATGTGGCCATCACTTGGCGTTTAAGAACAA
GGACACGCCTGGCATGTCTGAAACCTTTCATTAGCAAGCGGCCAAGTTGA
CTCCCGAGGGAAGCCACTGGCGATGGTTGCCGGCGAAAACCACCATTGCC
GGTTTGACGATGCTCAAGGTACCGACGTTGTTTGGAGTTGCTCGCGATGT
CGAGAATGTTGTCAAAATATCGCGACACGCGACTGACGGAACCCGTTGGA
CAGTAAAGTATACATACCAACGCGCGCGACGTTAATAAACCGATACTATG
GAACAAACATTCTCGCCTCGATGGAGAGTTGGCCAGTATACACAAGGCCT
GGACAATGGACCGCTCGATCCGCCCCCTTTTACGTGCTGCCCCATGCCAC
GTGTGAAAGATGTCCCGGCTTTATGTTGAATTATTTGCAGTTGTTCGTCA
AGGCAATCTTCGATCGCGCTCACGGGAACAACTGGTTCGCGGACCCTCTA
GGCAAGCCAGGGCTGTTTCAGTACGGGGTGGAACTGATGGCGTTCGCGCT
CGGGACGGTCTTCTTGAGGACTAAGAAGGCGACGGAGGATGCTTACGCGG
CGACGAAGAGCGCTTCCATCCGAGGTTCCGGTGATGGTGTCACGGTGAGA
GCCCAAAAGTCTTTATTGTAGCATTCCTTCGTTCCTTCGTGCTTGATGTC
AGCCTTGTATAGTTCTTGAGGCAAATCGAAGCAAGCTGTTGAAAGCGCAG
GGAGTGTCGTCCTGCGTGATTTCTTTGGGGGTGGAAATGCTGCACGTGAA
GGTTACCATCGCTCCCTGGTAATGCAACACACCGCAATCCCCAATATTTA
GATCATGTCAACGACAGGTATCCCAGTAATGTGTGCGCAAGGAGATCGTT
GATTAGGGTAGACGATATTGTTTCGGGTGTGAGTCTCGCGGCGATACTTC
GGCGTTGTCCCGATCATGATGCAGGTAGTACTCATGGAAGATTACTTGGA
GTTCCAGTCGCCACAGCAGCGGGATCCTGCGGAGACGGACGCCAAAGGCG
ACCGGTCTTTGGTCGGGGTGAGTTTGGATACTTGTCGGTCGCTTCCTTCC
GCGCGCTCTCCAACGCCTCAAAGCCAACGCAAGATGTGCCAATCTCGATC
CAAAAAATTAATGCGTTCCGAAACAATCATAGAAAGCACGCCTAACACCC
CCCGGTAAAAAGAAACAAGGGTAACTTCTACGCGGGTCTTATTAAATAGT
TAATGTTTATTGTCGGTTCAAAATCTCACGGATTGCGGCCCGGTAGCGGC
AAGTCCTCTGTTGAAATCGGCGTGATGCCGGAAGACCCCCGCTATTACTG
CAGCGATAAGAAAAGGCATAAAACGTTTAGCGCGGAGACTGTGTCGGCAC
CAATGCGTTGAAAGCCGTCTACAACATCTTGATATATACCCCCACCCATG
TTTTTTCCTGCTATTAAATACGGTGCAGAGACTATAACTCGTACAACATG
TTATTTACGGTATGTTCTAGAGCTACGTACTGTACATGAGCGAGATTTCT
CTTAAAGCTGTCAAATTAGTCTAAATCATTTCCTTCGCCATTTTTTCGGA
AAATTGAGACGGGGGCTTCCATGACCCAAGAGAGGGGCGCGAACGGTAAT
CGCGCAACAGGTACAGGTAACAGGCTTCGCCTTAACTTCCCCCCCCCAAA
AAAAACCAAAACAAAACGCATTTAAACCCGCTTCGCCCAATAGGTGATCA
TCATACCAGGAGCTCTCATTTCTCCATTCGCCTACTCTATACTGGCTCGT
GATCTGGCGCGAAAAGGATACCCGTCCTTCGTTCTGCGACTGCCGTTTGA
TCTCGGTGCGTCTTTCAAGTCCGTGGTTTCCTGTTTTTTTTCAGTGCTTG
CCCCGGCCGGAAGTATCGTGCACTACAACCGATTTTGTTCCGACTCGAAA
GGCAGCGCGTCTATTGCGATATTGAGATAGCCAGCGTACGGTGCGATTTA
TAACTTAATGCCGCTATTTATATTCGAGAAGACACACAAATATTTGGTCG
ACGCACTTGCATCTGCGCAGCATTCTACGGGTGGTCGACTGCCGGTAGAA
TCATCAAACGCCCGCACAAGCAAGGCCAGGTTCCGGCCCCGACGAAGTGG
GTTCTGCTGGGCCATTCTCTGGGAGCGAGTGGTGTTCAACGGGTGAGAAT
CTCATTCGGACTCCTGACATCCCGCTCTGGCGACAATGCGCGGCTTTCCT
CGTAGGTAATTGTCCCTTTACATATCTCCACAGCTAGTGCCTAACGTGCT
GCTTTCTCCCGTAATGCATAAAATTATCAAAATGCACCGTCTACGCAAAA
GGCGTGATGCGTCTCCCACCGCTGCTGCTGCTGTCCCGACACGCCGCGTC
ATCAGTTCACGGACGCTAGGCCGGAATGCGTCGATGGCATGGTTTTCTTG
GGAGGCGGCCACCTTATCGCGGGGAATCTGGCAAAACTTGACATCCCATC
GCTGCTTATCTGGGGCTCTCGCGACCCCTTCACCCCGACGAAGGTGAAAC
CGAAAGGCAAAGAAAGCCTCTTTCCGCGAGAGGAATCGTTGCTGCAAATC
GTCTACCGCTCCATCAAAATGCCTTTCGACCTATTGGTGGGCTTTCCCAC
CACACCCCAGCGGTCAACCTGAGGGTGCTCGGAAGGTACAAGATAACCTT
CAAGGTGTGCTGTAATTATTTCAAAGTTCTCTCAAGACTTGTGCGCTTGT
CCTTGAAATACAGATGCTGCAGAAGGCCAAAAAAAAAATGCCAATGGGAG
CGGATTCGGTGGTGATCCCTGGAGGCAACCACAGGGGTTTCGCGTCGTAC
AGCCGCCAGGCCCTGGACTGGGAGGTGAGAGAAGAATGGAGTCAGACGAC
TTTAGCAATCCTGACATCTACACTCCGCCAAGACTCCCCATCACTTGATT
CGTTGTCCCCATCGTAAGGCACCTACATTCTCGAAGAACACTGATCTCGA
AGAGATTGTGCTCGGAGCCGCCGATCGCCGCGCACTTTTGAACAATCCGC
CGGCCTCCACTCTTCTGCCGTGCTCCTCAGGCGACCATCACCCCGGAAGA
GCAGCGGCAGAAGACCGTAGAGGCTCTCGTGGAGTTTATCGAGCAGAAGG
TTGTCCCATGAAGCGGTTTTGGTGTATTGAAGTTTTGCATTCATACATAC
ATACAGCCACCGAGGCACCACGAGAACGATCGGCCTCACCACGAAGGTTT
GGCATGCTGCGACGGGAATGCGGACCGTTCACCTCCCGCTCGCAAGTTCT
CTGGCCTGGAGTGGGGTGTTCAGGTGTTCGATGAAATGTCGTTTGGGTTT
TGGATTTCTTCGGAAAGCGAAAACCTGGATTTCTAGTGATTACGAACTTG
ACACGTTTACACGTTGTAGATAAAAGTCGTGGGAACCGTCCGCACTGGAT
GAGTTCGAAGTAGCACATGCTTAAGATACTTGAGAGCGAAAGCGCCACAG
CGGGCACAACAAATGCTGTTTGTTGCTGCAATCGATTGCGGTGCGTATTG
GTTGGCTGTAACGCCCACGAGTTCTAAGCCATGGCATGCGTTTCACGGGG
CGTTTCAATACGCTTGAGTAAAACAAATTGAAATACCGTATAGAGCTTGC
TTCCAGGCTCGGGAAGTTTTGTGGGAAATTCCGCTAAGATTTTTCAAAAG
TCGGCTGCTAGGATTTGAGGGAGTGGAGAAAAGAGGCGCTGCTTTTATTG
GAGCATCAAGTACTTCCTTCGTGTCTGGTATAAATGAGAGATTAAGTTCG
AGCATATGGTACAGCTATCCTTGCCATGCCCTCGTCGAATGAACGCTTAC
CTCATGATTCGGAGTTCTCTGTTTAGCTCACATTTGTACAAAAATAACCA
AGGGTAACGCCGTTGTACGTTTTCCGCAAAACCTAAAACAAGATGGGGCG
CACGAGGCAACCAGCCATCAAAATACACCGGTGATTGGGGCAAACCGGAA
GGAAAGTCTCTTGAAGCCAACGGTGACGGGGGCATGGTCGGGACGGCGTA
TATTCGTTCTTGTCGAGGTCATTGTTCATGTCGATCGTGAGGATGTCATT
CAGAGACTCCTTGGCCAGAGTCAGCATTCTGAACGCTTCCCCTTCTTATC
ATATCTAAAGGCAGCAGTTAATCCCCCCACAGAAATCAACACGTCCGCGG
TCAGGCCGTATCTGCAGTACAATAGAAAGACATACACAATTAGTTTTGAA
CGAGTCGAACGCGAGGGCGGGAATGGCACGAAAGAGGTGGTCGGAGGTGG
CACGGAGGTATGTTCCTGCCCAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1139:69909..75431+

>mRNA_A-nodosum_M_contig1139.8.1 ID=mRNA_A-nodosum_M_contig1139.8.1|Name=mRNA_A-nodosum_M_contig1139.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=969bp|location=Sequence derived from alignment at A-nodosum_M_contig1139:69909..75431+ (Ascophyllum nodosum dioecious)
ATGCTCGAGGACGTGATTTTCGTGTTGAAGGATTTCTTGTTATGGGCCAG
GCGCCGCTTGTTCCTCCTGGCGTACAGCGCGACGGCGCTTTCCATCATGG
TTCCTTTCTTGTTCGTCAAGGCAATCTTCGATCGCGCTCACGGGAACAAC
TGGTTCGCGGACCCTCTAGGCAAGCCAGGGCTGTTTCAGTACGGGGTGGA
ACTGATGGCGTTCGCGCTCGGGACGGTCTTCTTGAGGACTAAGAAGGCGA
CGGAGGATGCTTACGCGGCGACGAAGAGCGCTTCCATCCGAGGTTCCGGT
GATGGTGTCACGGTAGTACTCATGGAAGATTACTTGGAGTTCCAGTCGCC
ACAGCAGCGGGATCCTGCGGAGACGGACGCCAAAGGCGACCGGTCTTTGG
TCGGGGTGATCATCATACCAGGAGCTCTCATTTCTCCATTCGCCTACTCT
ATACTGGCTCGTGATCTGGCGCGAAAAGGATACCCGTCCTTCGTTCTGCG
ACTGCCGTTTGATCTCGCATTCTACGGGTGGTCGACTGCCGGTAGAATCA
TCAAACGCCCGCACAAGCAAGGCCAGGTTCCGGCCCCGACGAAGTGGGTT
CTGCTGGGCCATTCTCTGGGAGCGAGTGGTGTTCAACGGTTCACGGACGC
TAGGCCGGAATGCGTCGATGGCATGGTTTTCTTGGGAGGCGGCCACCTTA
TCGCGGGGAATCTGGCAAAACTTGACATCCCATCGCTGCTTATCTGGGGC
TCTCGCGACCCCTTCACCCCGACGAAGATGCTGCAGAAGGCCAAAAAAAA
AATGCCAATGGGAGCGGATTCGGTGGTGATCCCTGGAGGCAACCACAGGG
GTTTCGCGTCGTACAGCCGCCAGGCCCTGGACTGGGAGGCGACCATCACC
CCGGAAGAGCAGCGGCAGAAGACCGTAGAGGCTCTCGTGGAGTTTATCGA
GCAGAAGGTTGTCCCATGA
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