mRNA_A-nodosum_M_contig1127.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1127.4.1
Unique NamemRNA_A-nodosum_M_contig1127.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1127.4.1 vs. uniprot
Match: A0A6H5L6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6N4_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 9.110e-14
Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = 1 
Query:    1 MLSFNELHVDFVRLLSATERLAVAGDASADGKWKKXXXXXXXXXXXXXLQSQLQVRLSETNASTYSSQQGFANSRPSAEDLDQYGRRLENLRRKREDLS 297
            M S +E+HVD VRLLSATERL  AG+ SADG W+               QSQLQ +++E +    +   G + + P+AEDL  Y RRLE LRRKR+DL+
Sbjct:    1 MQSAHEIHVDLVRLLSATERLVAAGEPSADGSWEHWPRFCQFITWLDSTQSQLQAKVAEVSRGAGA---GLSPASPAAEDLADYDRRLEILRRKRDDLA 96
[Close]
BLAST of mRNA_A-nodosum_M_contig1127.4.1 vs. uniprot
Match: D7FHQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHQ2_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 2.290e-11
Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:    1 MLSFNELHVDFVRLLSATERLAVAGDASADGKWKKXXXXXXXXXXXXXLQSQLQVRLSETNASTYSSQQGFANSRPSAEDLDQYGRRLENLRRKRE 288
            M S +E+HV+ VRLLSATERL  AG+ SA G W+               QSQLQ R++E +    +   G + + P+AEDL  Y RRLE LRRKR+
Sbjct:    1 MPSVHEIHVELVRLLSATERLVAAGEPSASGSWENWPRFCQFITSLDSTQSQLQARVAEVSRGAGA---GLSPALPTAEDLADYDRRLEILRRKRD 93
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1127.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6N4_9PHAE9.110e-1447.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHQ2_ECTSI2.290e-1145.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1127contigA-nodosum_M_contig1127:8225..12811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size526
Hectar predicted targeting categoryother localisation
Exons2
Cds size525
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866525.5549738-CDS-A-nodosum_M_contig1127:8224..83471680866525.5549738-CDS-A-nodosum_M_contig1127:8224..8347Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1127 8225..8347 +
1680866525.5645714-CDS-A-nodosum_M_contig1127:12409..128111680866525.5645714-CDS-A-nodosum_M_contig1127:12409..12811Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1127 12410..12811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1127.4.1prot_A-nodosum_M_contig1127.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1127 8225..12811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1127.4.1

>prot_A-nodosum_M_contig1127.4.1 ID=prot_A-nodosum_M_contig1127.4.1|Name=mRNA_A-nodosum_M_contig1127.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=175bp
MLSFNELHVDFVRLLSATERLAVAGDASADGKWKKWSRFCQFISSLESLQ
SQLQVRLSETNASTYSSQQGFANSRPSAEDLDQYGRRLENLRRKREDLSS
AAAAAAAEAAAAAASSEAAAAAATVSDPSAGAVSTTPEAGVVPVVTAAGR
GKNAPEEKFNQRGGGGSVVHRGRSR
back to top

mRNA from alignment at A-nodosum_M_contig1127:8225..12811+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1127.4.1 ID=mRNA_A-nodosum_M_contig1127.4.1|Name=mRNA_A-nodosum_M_contig1127.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4587bp|location=Sequence derived from alignment at A-nodosum_M_contig1127:8225..12811+ (Ascophyllum nodosum dioecious)
ATGCTCTCCTTTAACGAGCTCCACGTCGACTTCGTCAGGCTTCTCAGTGC
TACTGAGCGCCTTGCGGTGGCCGGAGATGCTTCTGCAGACGGGAAATGGA
AAAAATGGTCGCGATTCTGCCAGGTTGGGGTGGTAGGCTCGGCTTTAAAA
TTTGTCCTAGTGCACTCCATGCACCAGTACTTGTACACGACGCAAGTTTC
CGGCTGAACTTACGACGTTGTTTGAAAGCTGGAGCAATGAGTGTTCTTAC
AGGGTCGTACATGACATTGCATGCTACATTTTCCTCGCCTCTATTCAGCA
GCAGTCGTGCACATTGGTGAGAGCGTCTGCGCACAAGACTCTACTTGCTA
CTATTACAATAAATTTCGTCTAGTCTAGTACCCTCCTATTTAGTAGCACT
GTTTCGTTTTACTGTCTGTTTGTATCATCTCACTTATGGACCGATGGGCC
CCAACGTGCTAGGTTACCAATCCCGCCCACTGCAACGCTGCCACCCGCCC
TGTGGACACGAAAGATCTTCCCATCTCTCCCCGGTGCACGCCTTATGAGT
TTTTATCGCGATGGAAGTTTAGTACTCTTACAACTCGTCAACCAACTATG
GTTGAGTTTTACCTACGCTATGGAAGCTAGAATATAGATTCTGGTTTTCT
CAAGAATTGAACTCACGACTCCCGCACTAAAATAGTATTAATAGGTGAAC
ATAGTTACCTACTGGACCACTCGGGAGACTAATCGGTACAAGTAATACAA
GTAATATCAGAAAATATTTCAAGAACCTTGCTCATCTTGGGCCCCCGCCG
CCCCAAATATAACCTCTATGAATAGACTAGACTTTCTACTAAGGGCTGGT
TGATACAGTAGCTTAGTATCCTGCTGCATGAGTCGTCTCGATCTCCATCG
AGAGCTTACTTGCATACGGAATAACGAGGAAGCATAGTAGCAGGGCATAG
TAGCAGGGAGCTGGTGCTATTGATGGTTTGTATCTTGACTGAACAAAACG
AGTCCTGTAGCCAtctTCCACTACAGTACTGCTGTACTGTACACCTCACG
ATATTCACTACTACAGCAGTGCGATCGcCCGTACAAGGTACTGCTGCTGT
ACTACATTATATCCCAATAGTTGCGAATGACGGGGTACATCAGTAGAGCT
ACATACCTCACAATATTATTATCGCTGTCGACGTCCTGCTGGGTACTGTA
CCCGTCCCCCCGTCACGAGTCGAACTCTCAATATACTATAAATAACGTTG
GTGCAAACTTCATACCTAGGCGCCGTTTCATCTGTGCTGTCTACTTCACC
TTCTTAGCTGACTTTGGATAGGATTATCAACCTTGTTCGATTCATGCTCA
GTCTGCTTAAAGGTGATGACCGTCACCACCACCATCAACAACAACCGTGC
CCTCGGGTTGCCAATTCAACCGGCTGCGACGTCGCCTGTGTACTGATCGT
ACTAACCCTTCTCTCCCTCCTCTCCCCGGACATCGCCTTCATCTGTATCG
CTTTGTGGGCACAGCGTTCCCAAGGCCTGGCCAGCTATATTGTACAAAAT
GTTATACATTATTGGTATCGCCGGTACTTTCAGCATGCCCACTTCATACC
GTTAGTGGGTGTGGGAAAGAGAGGCTCATATTAATTGGTCCATGGTGACC
TGCCAATGCAGCACCCTTTTGACTACCTTGAGGTTTACTGGCCCTGTGCC
GGCGGACTCTCGGCAGTGAACGTCATCGGTACGCAATTACGTGACCCGAT
AAACTCGGACTGACCCGATGGCGTATGGCGGTTTTAATAGACAAATGGAC
GCCGCCGCAGAACTCGGGAGGAATCCCTTAAGTAAGCACCATATTCAGCC
TGTGTATGGAGATGAGCAGGCTGACGCGGGAGGGTACTGCCGAACCCGTC
TCGCTAGACCAAATTCTCAGGCGCGATTGGGGACTGGGACTAAAACATTT
TCCCTGTTCAGCTGACCACAAGCAGGATTGGCAACCATACTCGGTCGATC
TTTATCTTTTCTGTATGTATGACCATATATACATACATACATAGATAAAT
CCCGTGAGAAAATTTCTCGGCCGCTCTTGTTTCGCCTTGGTGACCGCCAC
AATTGCCAAGCTACTGTATTTGTGTCAACATTTATCAGAGCTACTGTATA
AGTGGCGTCGTGCCCATGTGTCGCAGTACGTAAATTGACTACTGAGCAGC
TCCAACCAGGGAGTTAATTTTCTAGTGGAGGCGGTACGCGTGATGATCAT
GCGAGCATTCTAACGAATACGTTTACCTATATTATAGTATCATCCTCGAA
AAGTACCGAGGAGTCTTTTGGAAATTGCGAGTTAGATTCTCGTTGGGATT
TTAGAGCTACGTGTAGGAAGGACTCAGACCCATATACCTGATACGACTTA
CTCTCGGAGGACAAAAAGGCACGATATCTCTTTCCAATTAGTTTGAAGTT
TGAACTGGGAACCTCGGGGATGGCGTCCCCTGGTAAAAATTATTTGATTT
TAACATGGTAAATATATATGGGTTACGCCGCAAGTATGCACTTGCGTATA
GGGCTGATATCTACTGGAAGAAAAACTGACTAATAATACCAATAGGAAAC
AAAAACTGTATGAATGCATGTATGTGTGTATGGTCATTACTCAACGGGTA
GGGTTGCCAATCCTGCTCGTGGTCAACTGAACAGGGAAAATGAATATTCC
TCTGTCCCCGTACGCGCCTGAGAATTTGGTCTCGCGAGACGGGTTCAGCC
GTCCCGTCCCACGTCAGCCTGCTCATTCTCCATTCTCAGGCTGAATCTAG
TGCTTAGTGTAACGCGCATTCCACTCGAGCGCGTCCTTGCGAGCGTTCTG
GGCATCCAACTCCAGTCTATTGGCGAGTCTCTGTGTCTTCTTAGAACGCG
CGACCGCCCTGCCGAACATGACGACACTCCTACCGTGCGCTTCGCGACAG
TGGCTCGGGAACAGCACGAGAGAAGTGTCGCCATGTTGGACAGGGCGGTC
GCGCGTTTTAAGAAGACACAGAGGCTCGCCAATAGACTTGAGTTGATGAC
CAGACGTTCGCGCAAGGACGCTTGAGTGGAGTGCGCGTTGGACTAAGCAC
CAGATTCAGCCTGAGTATGAGAATGAGCAGGCTGGGACGGAATGAACCCG
TCTCGCGAAACCAAATTCTCAGGGGCGTACGGAGACAGGGGAATATTCAT
TTTCCCGGCTCTGTGTCTTCTTAGAACGCGCGACCGCCCTGCCGAACATG
ACGACACTCCTCCCGTGCGCTTCGCGACAGTGGCTCGGGAACAGCACGAG
AGAAGTGTCGCCATGTTGGACAGGGCGGTCGCGCGTTTTAAGAAGACACA
GAGGCTCGCCAATAGACTGGAGTTGGATGACCAGAACGCTCGCAAGGACG
CGCTTGAGTGGAGTGCGCGTTGGACTAAGCACTAGATTCAGCCTGAGTAT
GGAGAATGAGCAGGCTGACGTGGGACGGGACGGCTGAACCCGTCTCGCGA
AACCAAATTCTCAGGCGCGTACGGGGACAGGGGAATATTCATTTTCCCGG
TTGAGTAATGACCGTACATACATACATGCACTCATACAGTTTTTGTTTGC
TATTGATATTATTAGTTCATTTTTCTTCCAGTAGATATCAGCCCTATACG
CAGGTGCATACTTGCGGCGTAACCCATATATTTACCATATTGAAATCAAA
TATTTTTTACCAGGGGACGCCATCCCCGAGGTTTCCAGTTCAAACTAATT
GGAAAGAGATATCGTGCCTTTTTGTCCTCCGAGAGTAAGTCCTATATAGT
ATATCTATATGTATATATGGGTCTGACTCCTATACGTAGCTCTAAAATCC
CAACGAGAATCTAACTCGCAATTTCCAAACGACTCCTCGGTAGTCTTCGA
GGATGATACTATAATATAGGTAACGTATTCGTTAGAATGCTCGCATGATC
ATCACGCGTACCGCCTCCACTAGAAAATTAACTCCCTGGTTGGAGCTGCT
CAGTAGTCAATTCACGTACTGTGGTCTATGGTACATGCGATGTAAGACGG
GCGGTACAGTTACTTGTTTCTGCGTCGCGCTCGTAGCCCGTCCGGTGGAT
CCCATTAGCATGAAAAAGCATTCGACTAAAGTACCTCGCTGAACGTTGCG
CAAACCCCTCCCCCCCCCCCCTAATCAACGGCCAGTTCATCAGCTCGCTG
GAGAGCCTCCAGTCACAGCTGCAAGTGCGGCTGTCGGAGACAAATGCTAG
TACCTACAGTTCCCAGCAAGGCTTTGCAAACTCCCGCCCGTCTGCGGAGG
ATCTCGACCAGTATGGTCGTCGGCTGGAAAACTTGCGGCGGAAACGCGAA
GACTTGTCCTCAGCCGCTGCCGCCGCCGCAGCAGAAGCAGCAGCCGCAGC
AGCCTCCTCAGAAGCCGCCGCAGCAGCAGCAACCGTGTCTGATCCTAGCG
CTGGTGCAGTATCAACTACGCCTGAGGCCGGAGTGGTGCCCGTCGTGACG
GCGGCGGGACGAGGAAAAAACGCGCCGGAAGAAAAGTTCAATCAACGCGG
CGGTGGAGGCTCTGTAGTGCATAGAGGAAGATCGCGA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1127:8225..12811+

>mRNA_A-nodosum_M_contig1127.4.1 ID=mRNA_A-nodosum_M_contig1127.4.1|Name=mRNA_A-nodosum_M_contig1127.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=525bp|location=Sequence derived from alignment at A-nodosum_M_contig1127:8225..12811+ (Ascophyllum nodosum dioecious)
ATGCTCTCCTTTAACGAGCTCCACGTCGACTTCGTCAGGCTTCTCAGTGC
TACTGAGCGCCTTGCGGTGGCCGGAGATGCTTCTGCAGACGGGAAATGGA
AAAAATGGTCGCGATTCTGCCAGTTCATCAGCTCGCTGGAGAGCCTCCAG
TCACAGCTGCAAGTGCGGCTGTCGGAGACAAATGCTAGTACCTACAGTTC
CCAGCAAGGCTTTGCAAACTCCCGCCCGTCTGCGGAGGATCTCGACCAGT
ATGGTCGTCGGCTGGAAAACTTGCGGCGGAAACGCGAAGACTTGTCCTCA
GCCGCTGCCGCCGCCGCAGCAGAAGCAGCAGCCGCAGCAGCCTCCTCAGA
AGCCGCCGCAGCAGCAGCAACCGTGTCTGATCCTAGCGCTGGTGCAGTAT
CAACTACGCCTGAGGCCGGAGTGGTGCCCGTCGTGACGGCGGCGGGACGA
GGAAAAAACGCGCCGGAAGAAAAGTTCAATCAACGCGGCGGTGGAGGCTC
TGTAGTGCATAGAGGAAGATCGCGA
back to top