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Homology
BLAST of mRNA_A-nodosum_M_contig1112.4.1 vs. uniprot
Match: D7FRQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRQ8_ECTSI) HSP 1 Score: 283 bits (725), Expect = 2.090e-82 Identity = 272/606 (44.88%), Postives = 313/606 (51.65%), Query Frame = 2
Query: 200 ASELSELRAELWRTRDNLERMKSH-TPPSAGQSSHRLFNRRHH--------ADGNIVDRENAEPQ----RPNERDRVKDLKLDRCA----GGGVRSGPTS--------PPSG----------------------------GSSRSDQNNGRSGDGIAAGRGFSEEMAAEETLNSLALEGAAFKNWTEEASSIAVRLIEEVKTLRWERVTWTEREAATERA-----------ATELKERTXXXXXRLLAAEEDARRTKEALLRXXDGXXXXXXXXXRAEQDLRAARKRSEERWGRADGLEGRDTQVGRS------------------------------------LREELRREKEGADALQRRLDQARAASARHEVEKKEWHASRERLEELRRLWGKQLRKVEKKVRTMAKENKALQERVAEADKARECAEADARRSADELRRLTEQRDNLLLGATRAGH---LSASSPADALAELLAXXXXXXXXXXXXXXXXXXXXSSAHARGSVKGGAWGWADKYSDGAGGDSRAEDLEAELERARAEAKLARVAVKQERLRREGAAKEKDEAVRQLRRLMGAAKRAVSRKDARLRSSRMETEVVWNALTEAVR 1708
ASELSELRAELWRTRD+LER+KS TPPSA S R F+RR H A + N + R +E+ + L+ A GGG+RS P P SG GSSR + S AA G SEE+AAEETL +L LEGAAFKNWTEEASSIAVRLIEEVK LRWE+ +W ERE A E A L+ER L AE D RR +EAL R A+QD+ A+GL L E LRREKEGADALQRRLD ARAASARHE E+KEW +S M KEN AL+ RV EA++AR+ A+AD+ +ELRRLTEQRDNLLLGATR G L ASSPA+ LAELLA XXXXXXX D G G D +LEA+LE+AR+EAKLARVA +QERLRRE AA+EK+EAVRQL RLMGAA+RAV R+D+RL+SSRMETEVVWNALTEAVR
Sbjct: 3 ASELSELRAELWRTRDDLERIKSRGTPPSADCSPRRHFDRRRHRASPSPTLAATTACEVRNKDRDYRRHRHSEQHKGDGLEAGGGARGDSGGGIRSXPXXXXXXXXXXPGSGADYDDEAPRGLGGTASSGSSHGGRQLKFGSSRGRVGSASSEGENAAKGGSSEEVAAEETLCNLELEGAAFKNWTEEASSIAVRLIEEVKMLRWEKASWAERERAAEXXXXXXXXXXXXQADHLEER-------LGLAEADGRRAQEALAR--------------AQQDVERXXXXXXXXXXXAEGLRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVEMLRREKEGADALQRRLDAARAASARHEKERKEWRSSXXXXXXXXXXXXXXXXXXXXXXXXMTKENAALRARVGEAERARDRADADSLGHREELRRLTEQRDNLLLGATRLGGRRGLVASSPAETLAELLAAXXXXXXX-----------------------------DATDVGPGADG---ELEAQLEQARSEAKLARVAAQQERLRREAAAREKEEAVRQLHRLMGAARRAVGRRDSRLKSSRMETEVVWNALTEAVR 555
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2439 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-00_003480.1 |
| Cds size | 1515 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680866507.4900305-UTR-A-nodosum_M_contig1112:178897..178977 | 1680866507.4900305-UTR-A-nodosum_M_contig1112:178897..178977 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig1112 178898..178977 + |
| 1680866507.5031216-UTR-A-nodosum_M_contig1112:181672..181788 | 1680866507.5031216-UTR-A-nodosum_M_contig1112:181672..181788 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig1112 181673..181788 + |
| 1680866507.5343597-UTR-A-nodosum_M_contig1112:183524..184252 | 1680866507.5343597-UTR-A-nodosum_M_contig1112:183524..184252 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig1112 183525..184252 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680866507.5128806-CDS-A-nodosum_M_contig1112:181788..182691 | 1680866507.5128806-CDS-A-nodosum_M_contig1112:181788..182691 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1112 181789..182691 + |
| 1680866507.5231462-CDS-A-nodosum_M_contig1112:182912..183524 | 1680866507.5231462-CDS-A-nodosum_M_contig1112:182912..183524 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1112 182913..183524 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1112.4.1 >prot_A-nodosum_M_contig1112.4.1 ID=prot_A-nodosum_M_contig1112.4.1|Name=mRNA_A-nodosum_M_contig1112.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=505bp
MASELSELRAELWRTRDNLERMKSHTPPSAGQSSHRLFNRRHHADGNIVD RENAEPQRPNERDRVKDLKLDRCAGGGVRSGPTSPPSGGSSRSDQNNGRS GDGIAAGRGFSEEMAAEETLNSLALEGAAFKNWTEEASSIAVRLIEEVKT LRWERVTWTEREAATERAATELKERTEALERRLLAAEEDARRTKEALLRA QDGEREQARATERAEQDLRAARKRSEERWGRADGLEGRDTQVGRSLREEL RREKEGADALQRRLDQARAASARHEVEKKEWHASRERLEELRRLWGKQLR KVEKKVRTMAKENKALQERVAEADKARECAEADARRSADELRRLTEQRDN LLLGATRAGHLSASSPADALAELLAAAAAGVVAGAGGDDHAAARRSSAHA RGSVKGGAWGWADKYSDGAGGDSRAEDLEAELERARAEAKLARVAVKQER LRREGAAKEKDEAVRQLRRLMGAAKRAVSRKDARLRSSRMETEVVWNALT EAVR* back to topmRNA from alignment at A-nodosum_M_contig1112:178898..184252+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig1112.4.1 ID=mRNA_A-nodosum_M_contig1112.4.1|Name=mRNA_A-nodosum_M_contig1112.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5355bp|location=Sequence derived from alignment at A-nodosum_M_contig1112:178898..184252+ (Ascophyllum nodosum dioecious) GTAGCGCGGAAACTAAGTACTTTTCACTTGGGAGGAGGTGCTGATCTACC
TCTGTTTACGGTCATTTTCTTGAAAGACGGGTGAGTCGGTTGGGGCTGAC
GACACATGTCACCTTCCTCAAGCCAGCTATCCTACTTTTCCCCTTGTACT
AGGCGTGACGGCTCCAAACAACTGAGTCGCCGATTGTCCACCGACATCTC
GTGACGGCTGACTTGCTATTACTACGAATACATCGTACTTGAAGAGCTAA
CTTTAAAGAACAAACTTCCAACCGGGGATATGTCGTTCTCGTTGACTGAT
ATCCGGTAGACGAATGAAGCAGCTTGTCTTGGCGTATTTTGAGACCCCGA
TAAAATCATTTGTATGTCCATGTCGCCTTGCACGTTGATGAACTTCCGAA
CTGATAAACATAATCGTATGGGGGCCGGTCGCATGAAATGCTTGATGCTG
TACAGTAGCTCTTGATGTTGTAGCTCTACCCTACCGACCATCTTCTTCGT
TTCTGTCAACAAGTAGTGTACGTATGAAACCTCAGTGCGTAAAACGAAAA
GTTGGCCGATTAGACTACTACAAACTACAACTGTTGTAATAGACACAATG
CGAAAATACTATGGTTACGTGCAGACAATGTACTGTCCTGTGGGAGACTA
TCTTGAAGCTCGAGCTCGGAGCGAGGGTTCCAGGCGATGCCCTTCCCCTA
TACCTTCACTTCTATGGCGTCGCTCTTCGACATCAGGGATAGTGTGAGGA
TATTCCGACGCCCTTTGTGTGTCTGAGGTCTCCTCTCGTTGATGTTTGAT
ACTTCGAATCCCGCGCTTCGGCTCCGTCCTGGCGCTGGGTATTTCCACCC
AAATCAGTTGTGAGACATTCTTTATCGCACATGTCCACCCGATACTTTCT
GTATCACACATTATTATAACATTATAACATGTACACTATACACCAACAGT
GGGTGTGGGAAAAGAGAGGTATAAAAAATGATCCATGGGTATACCTGAAA
AGGCAGCACCCGTTACTCGAACTACCTTGAGAACTGCTGGCCCTGTGCCG
GCGTACTCTTGGCAGTGAACGCCATCGGTGAGCACTTGCGTGACCTGATA
AACTCTGGACTGACCCGATGGCGGTTGACGGTGCAAATAAATAGACGCCG
CCGCGGAAAGCGGGAGGAATCCCGTGCGGAAGCACCATGTTCAGCCTGAG
TGTAGGGGAGTGGGCGGGCTGACGCGGGACGGAACGGCCGAATCTGTCTC
GCGAGACCAAATTCTCACGCGCGAACGGGGACAGAGAAAAAAATGAAATT
CATTTTCACCCGATTGATCCTTATTCTGCTATAAGTGATGACCGTACATA
CATACTCCCAGTAGCGTAGCTCCTCTCTTTCGACTCGAATAAAATACATG
CAAGCTTCCAGAACGAGCCTAGTACGACCGTATCTTTTCAATTTGAAACG
ACATTCGAGCATCAACTTTAAGTGCTTCTTCTCTGTTGAGAGGGGCGCAT
AGGTCATCTATTATTAGCAACCTCGAACATTCAGCCGATCTGTACGAAGG
GGCGTATGGATCCTCTACTGGTAGCATCCTTTAAAAATTCAGCCGACAGG
CACACCACGGAATAACAGTTGTTGTTGTTGTTGTCATCCCATGTGCTGTA
TGCGTTAAAATATATCTCTCGATACGTTTGTAAACACGCTCCAGCCGGGG
TCACAACAGGAGAAAGGCCACACATCCTTCCTACTGCGGTACATGCCTTA
GTTTTTTATCGCGAGAAGGGTTCAGCCCTCCCTTTCCCTCGTCGACGTTG
AAGTCGAATTTTGTGTACCCACGACAATTTAGTCGCTCTCCACGTGTTGG
GCATGATATGAGTTAGAATCCCAGTTCGTGTGACTGCAGCTAGGATTCGG
GCTCAATCCCCAACTTCAGATGGTTGCGGTTACCAACTGAAAGGTCGTTG
TCATCATCCCTTTGTCTGCGCGTCGTACAATATCTCTCGATACATCGGTA
GACACTCCAGTCGGGATAGCAACGTAACCTATTGTTCCTAATATTCCAGT
TCCAGCGGTGCCATTGGTGCACATTTTTTTGCACAACGGCGACAGAAGTA
TCTGGAAACTTTTCTGCGACGGGCGGTGTGTTTAGGACACCTGTACCACT
ATCTGTCCTTTACCTATAATAACTCCTCCTGCTGTCACAAAAGTAACACG
TCAGTGTGAAATACAAACACGTACCAGGTACAGTACTGAAAATATGGCAT
GGTTAAAAGTCCCTATTTACTTGTTGTAGAACGAAAACTTACCACTCTTT
ACCAATTATAGTATAATAACGTTCCTTATGTTCTAGACTATAACCGCCTA
ATGTGAAATGGTTCGATGGCACTATTATGGTATATTATTACTAACCTATT
TAATTACGTACAACATTGTTTTGTTTTGTTTTGTTTGGTGTCCCTGCATG
GCGATTAATGTAAGTGTACAGTATAACGGTGGGCTTCTCCCCGACATCAT
ACTGTTGACCCAATATTTCTACCACCGGGGAACCCGTTTAAATGCCACGA
AGAGGTTTGGTCTTTGCAGCCTATGATCCCACCTAAACATTTTGACATTT
TGCAGGGATGCTCAGAAGGTCTAAGATGCGTTCGAATTTTCCTTTAAACA
GTACAGTAAACACAACAGTACCTAATGATCCGACGTGTGACCAGTGGATG
CTCTCCGCTCACGGGATGACTTCCCGCGCTTGATCTCGCGCCTCGTCCCT
GAAACCCCGATTCAATCTGGATTAGCCAAGTCCGACACGCCCAACAGCAT
TGTTCTACCACTCCTGACGGAGACTGAGCATTCTCGGGGCAACACGTTCT
CAACCGAACTTTGGTCTACGTTGCCTTCCTTGGCGCGGAACATGGCTTCG
GAGTTGTCGGAGCTGCGCGCCGAGCTCTGGCGGACGCGTGACAACCTCGA
GCGCATGAAGTCTCACACCCCACCCAGCGCCGGGCAATCATCGCACCGCC
TGTTCAATCGCCGTCATCACGCAGACGGTAATATCGTGGACAGAGAGAAC
GCTGAACCACAACGTCCGAACGAGCGGGACAGGGTCAAGGATCTCAAGCT
CGATCGCTGCGCTGGCGGCGGGGTGAGGAGTGGCCCCACCAGCCCGCCAA
GCGGGGGGTCCTCCAGATCCGATCAAAACAACGGCCGCAGCGGCGACGGT
ATTGCTGCCGGTCGTGGTTTCAGCGAGGAGATGGCGGCCGAGGAAACACT
TAATAGCTTAGCGCTCGAGGGTGCCGCGTTCAAGAACTGGACGGAGGAGG
CGTCATCGATCGCCGTCCGCCTCATCGAAGAGGTTAAGACATTGCGCTGG
GAAAGGGTGACTTGGACTGAAAGAGAAGCCGCGACCGAGCGTGCGGCCAC
CGAGCTCAAAGAGCGAACCGAGGCTCTCGAGCGACGGCTTCTCGCGGCCG
AGGAGGACGCGCGGCGGACGAAGGAGGCGTTACTGAGGGCACAGGATGGA
GAGAGAGAGCAGGCAAGGGCGACGGAGCGAGCGGAGCAGGACCTGCGAGC
GGCCCGAAAAAGGTCGGAGGAGCGTTGGGGCCGGGCGGACGGGTTGGAGG
GTCGCGACACGCAAGTCGGGAGAAGCCTACGAGAAGAGCTTCGTCGTGAG
AAGGAAGGTGCCGACGCGCTGCAGCGGAGGCTGGATCAGGCGAGGGCGGC
GTCAGCGAGGCATGAGGTCGAGAAGAAGGAGTGGCACGCATCGAGGGAAA
GACTCGAAGAGCTTCGTCGCTTGTGGGGGAAGCAGCTGAGGAAGGCATGC
TTACTTTTCGTATTTCCACTGTGCCCTGTGCAAATTCTAGTGGATGTCTG
TAATGCGCTCGTGGCGTATTATGCTATGTCTTAGGTGCTTCGGATGTGAT
TGAGAATGATACCTCAGGGGCAACTCACGCCCGGATCGTGCTCGTAAGTG
TAATAACGCACGTATCACAGTGATTCTCTTCATACCTCCCTATCCATGCG
GCTCCGGTTTCTCAGGTGGAGAAGAAGGTGCGAACGATGGCTAAAGAGAA
CAAAGCACTTCAGGAAAGAGTCGCCGAGGCGGACAAGGCGAGAGAATGCG
CCGAGGCAGACGCGCGCCGCAGCGCCGACGAGCTGCGGCGACTCACCGAG
CAGCGCGATAACCTTCTGCTGGGAGCCACCCGCGCGGGACACTTGTCCGC
TTCGTCCCCCGCAGACGCGCTGGCAGAACTCCTCGCGGCAGCAGCGGCGG
GCGTTGTTGCGGGGGCTGGGGGTGACGACCATGCTGCGGCGCGTAGATCG
TCAGCGCACGCGCGAGGTTCTGTAAAAGGAGGGGCTTGGGGGTGGGCAGA
TAAGTACAGTGATGGCGCCGGGGGCGACAGCAGGGCGGAGGATCTCGAGG
CTGAGCTGGAGCGGGCCAGGGCCGAGGCCAAGCTGGCGAGGGTGGCGGTA
AAGCAGGAGCGGCTCCGGCGGGAGGGAGCGGCGAAGGAGAAAGATGAGGC
GGTGCGACAGTTACGTAGGTTAATGGGCGCGGCGAAGAGGGCGGTGAGCA
GGAAAGACGCCCGACTACGGTCTAGCCGAATGGAGACGGAGGTGGTGTGG
AACGCGCTGACGGAGGCCGTACGCTGACACCCCCCCTAGAAGTATTTTCT
GAGGCCATTTTTACAACCCTCACGTAACTTCGGCAGTCATCGGCAGTCAT
CGTAACCAGCACAATTACTTGGTATTAGAAGGGCAAGCTTTCCGCTGAGA
TGCGACTCGGTGCCTGCGCTCTGTTCTCTACTTTTGCCATGCGCTACCAG
CGGCTAGAACGTATGGATCACACGAAGCGAATCGGCGGCGAAATGCAAGT
GTGACGAACGATCCTTCACCGACGAAGAAACTATTGACCGTGGTTGCAAC
GCAGGAGCAGCTATCGGCTATTTAGCATTCCCTCGAGAACATGCACCACA
GCAAAACGTTTGAGCAGAATCCGTACAAAGCGCCTATGAATAGCTTGTGG
TAGTGGGGTCGCCACAAGAGGTGCTCACGACAGATCATTAGATTTACGAG
TCTGTAAGCTACACGCGATCCACACGTCCACAAGTAAGGGTCGATTTTGA
GCCCTCTCCCTCTAACTTTCCAATTTTAAGAAAAAAAACTTACGGAAACA
GTTCGGAAGTGGTCGTTCCGTTTTTTGTTTTTGTTTTCTGTCCTTTTCCA
GAGTTGGCAAATCTTTTTAGGATTCGGGATAGGTTTTGGGGAGTTTAAGT
ACGCGGGTAAAATGTGATTGATGGTGCACAGCAGTGCAATGTTTCGCAGG
TCATAGCGGTGATATTGATGGCATATACAGGCACTCCTGCTCCGCGGGGT
TCGGG back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig1112:178898..184252+ >mRNA_A-nodosum_M_contig1112.4.1 ID=mRNA_A-nodosum_M_contig1112.4.1|Name=mRNA_A-nodosum_M_contig1112.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1515bp|location=Sequence derived from alignment at A-nodosum_M_contig1112:178898..184252+ (Ascophyllum nodosum dioecious) ATGGCTTCGGAGTTGTCGGAGCTGCGCGCCGAGCTCTGGCGGACGCGTGA CAACCTCGAGCGCATGAAGTCTCACACCCCACCCAGCGCCGGGCAATCAT CGCACCGCCTGTTCAATCGCCGTCATCACGCAGACGGTAATATCGTGGAC AGAGAGAACGCTGAACCACAACGTCCGAACGAGCGGGACAGGGTCAAGGA TCTCAAGCTCGATCGCTGCGCTGGCGGCGGGGTGAGGAGTGGCCCCACCA GCCCGCCAAGCGGGGGGTCCTCCAGATCCGATCAAAACAACGGCCGCAGC GGCGACGGTATTGCTGCCGGTCGTGGTTTCAGCGAGGAGATGGCGGCCGA GGAAACACTTAATAGCTTAGCGCTCGAGGGTGCCGCGTTCAAGAACTGGA CGGAGGAGGCGTCATCGATCGCCGTCCGCCTCATCGAAGAGGTTAAGACA TTGCGCTGGGAAAGGGTGACTTGGACTGAAAGAGAAGCCGCGACCGAGCG TGCGGCCACCGAGCTCAAAGAGCGAACCGAGGCTCTCGAGCGACGGCTTC TCGCGGCCGAGGAGGACGCGCGGCGGACGAAGGAGGCGTTACTGAGGGCA CAGGATGGAGAGAGAGAGCAGGCAAGGGCGACGGAGCGAGCGGAGCAGGA CCTGCGAGCGGCCCGAAAAAGGTCGGAGGAGCGTTGGGGCCGGGCGGACG GGTTGGAGGGTCGCGACACGCAAGTCGGGAGAAGCCTACGAGAAGAGCTT CGTCGTGAGAAGGAAGGTGCCGACGCGCTGCAGCGGAGGCTGGATCAGGC GAGGGCGGCGTCAGCGAGGCATGAGGTCGAGAAGAAGGAGTGGCACGCAT CGAGGGAAAGACTCGAAGAGCTTCGTCGCTTGTGGGGGAAGCAGCTGAGG AAGGTGGAGAAGAAGGTGCGAACGATGGCTAAAGAGAACAAAGCACTTCA GGAAAGAGTCGCCGAGGCGGACAAGGCGAGAGAATGCGCCGAGGCAGACG CGCGCCGCAGCGCCGACGAGCTGCGGCGACTCACCGAGCAGCGCGATAAC CTTCTGCTGGGAGCCACCCGCGCGGGACACTTGTCCGCTTCGTCCCCCGC AGACGCGCTGGCAGAACTCCTCGCGGCAGCAGCGGCGGGCGTTGTTGCGG GGGCTGGGGGTGACGACCATGCTGCGGCGCGTAGATCGTCAGCGCACGCG CGAGGTTCTGTAAAAGGAGGGGCTTGGGGGTGGGCAGATAAGTACAGTGA TGGCGCCGGGGGCGACAGCAGGGCGGAGGATCTCGAGGCTGAGCTGGAGC GGGCCAGGGCCGAGGCCAAGCTGGCGAGGGTGGCGGTAAAGCAGGAGCGG CTCCGGCGGGAGGGAGCGGCGAAGGAGAAAGATGAGGCGGTGCGACAGTT ACGTAGGTTAATGGGCGCGGCGAAGAGGGCGGTGAGCAGGAAAGACGCCC GACTACGGTCTAGCCGAATGGAGACGGAGGTGGTGTGGAACGCGCTGACG GAGGCCGTACGCTGA back to top
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