mRNA_A-nodosum_M_contig1111.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1111.5.1
Unique NamemRNA_A-nodosum_M_contig1111.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1111.5.1 vs. uniprot
Match: UPI00144AF7F0 (TPR-like protein n=1 Tax=Macroventuria anomochaeta TaxID=301207 RepID=UPI00144AF7F0)

HSP 1 Score: 54.7 bits (130), Expect = 9.760e-7
Identity = 25/62 (40.32%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 GKYDEAKRLYERAVEIWEKTVGSDHPETAMALLSLAALLQAQGRFAETEPLHTRSREILEKS 186
            G+Y+EAK +Y+RAVE  E+ +G+DH +T  ++L+LA+L   QG +   E L  +  E++ K+
Sbjct:  471 GRYEEAKTMYQRAVEAKERVLGADHLDTLTSMLNLASLYNDQGHWTGAEKLLQQVLEVVRKT 532          
BLAST of mRNA_A-nodosum_M_contig1111.5.1 vs. uniprot
Match: A0A1Q8RYS3_9PEZI (Regulatory protein AfsR n=1 Tax=Colletotrichum chlorophyti TaxID=708187 RepID=A0A1Q8RYS3_9PEZI)

HSP 1 Score: 52.0 bits (123), Expect = 8.690e-6
Identity = 24/61 (39.34%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 GKYDEAKRLYERAVEIWEKTVGSDHPETAMALLSLAALLQAQGRFAETEPLH----TRSRE 171
            GKY EA+R+Y +++E+ EK +G ++P+T  ++ +LA +L +QG++ E E +H    TR+R+
Sbjct:  750 GKYIEAERMYRQSLELREKVLGLENPDTLSSMNNLALVLYSQGKYNEAEQMHRQXSTRARK 810          
BLAST of mRNA_A-nodosum_M_contig1111.5.1 vs. uniprot
Match: B4VUB5_9CYAN (Tetratricopeptide repeat domain protein n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 TaxID=118168 RepID=B4VUB5_9CYAN)

HSP 1 Score: 48.9 bits (115), Expect = 9.290e-6
Identity = 19/43 (44.19%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   25 LYERAVEIWEKTVGSDHPETAMALLSLAALLQAQGRFAETEPL 153
            +Y++A+E++++ +G DHP+ A +L +LA L  +QGR+ E EPL
Sbjct:    1 MYQKALELYKRLLGDDHPDVASSLNNLAYLYSSQGRYGEAEPL 43          
BLAST of mRNA_A-nodosum_M_contig1111.5.1 vs. uniprot
Match: A0A433PUW4_9FUNG (TPR repeat-containing protein (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433PUW4_9FUNG)

HSP 1 Score: 48.5 bits (114), Expect = 9.350e-6
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1
Query:    1 GKYDEAKRLYERAVEIWEKTVGSDHPETAMALLSLAALLQAQ 126
            GKYD A  LYERA+EI EK +GS+HP+TA +L +LA +   Q
Sbjct:   21 GKYDMAAPLYERALEIREKELGSEHPDTATSLNNLALVYNNQ 62          
BLAST of mRNA_A-nodosum_M_contig1111.5.1 vs. uniprot
Match: A0A7S3NLJ5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLJ5_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.060e-5
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1
Query:   10 DEAKRLYERAVEIWEKTVGSDHPETAMALLSLAALLQAQGRF 135
            DEAK LYERA+EI+EK    +HP  A  L +LA LL+ QG++
Sbjct:    1 DEAKPLYERAIEIYEKVYDPNHPHVATGLNNLAGLLEEQGKY 42          
BLAST of mRNA_A-nodosum_M_contig1111.5.1 vs. uniprot
Match: A0A7S3NLG6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLG6_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.780e-5
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1
Query:   10 DEAKRLYERAVEIWEKTVGSDHPETAMALLSLAALLQAQGRF 135
            DEAK LYERA+EI+EK    +HP  A  L +LA LL+ QG++
Sbjct:    1 DEAKPLYERAIEIYEKVYDPNHPHVATGLNNLAGLLEEQGKY 42          
BLAST of mRNA_A-nodosum_M_contig1111.5.1 vs. uniprot
Match: A0A1G0MZL8_9DELT (Uncharacterized protein n=1 Tax=Geobacteraceae bacterium GWC2_53_11 TaxID=1798316 RepID=A0A1G0MZL8_9DELT)

HSP 1 Score: 50.4 bits (119), Expect = 2.940e-5
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    4 KYDEAKRLYERAVEIWEKTVGSDHPETAMALLSLAALLQAQGRFAETEPLHTRSREILE 180
            +Y +A  L + A+ + E T G +HP+TA +L +LA L  AQG++AE EPL+ RS  I E
Sbjct:   43 RYAQATILAKEALRVAENT-GPEHPDTATSLNNLAGLYDAQGKYAEAEPLYKRSLAIRE 100          
BLAST of mRNA_A-nodosum_M_contig1111.5.1 vs. uniprot
Match: A0A3B8JJF2_9CYAN (Tetratricopeptide repeat-containing protein (Fragment) n=1 Tax=Cyanobacteria bacterium UBA8553 TaxID=2055771 RepID=A0A3B8JJF2_9CYAN)

HSP 1 Score: 47.0 bits (110), Expect = 2.950e-5
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 1
Query:    1 GKYDEAKRLYERAVEIWEKTVGSDHPETAMALLSLAALLQAQG 129
            G Y +A+ LY+R++ IWEK +GS+HP  A +L +LA L   QG
Sbjct:   10 GNYSQAEPLYQRSLAIWEKALGSEHPNVATSLNNLADLHWQQG 52          
BLAST of mRNA_A-nodosum_M_contig1111.5.1 vs. uniprot
Match: A0A2T5K0N7_9PROT (Tetratricopeptide repeat protein n=1 Tax=Nitrosospira sp. Nsp2 TaxID=136548 RepID=A0A2T5K0N7_9PROT)

HSP 1 Score: 50.1 bits (118), Expect = 3.990e-5
Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 GKYDEAKRLYERAVEIWEKTVGSDHPETAMALLSLAALLQAQGRFAETEPLH 156
            G Y+ A    ++++ + EKTVG+DHP+TA +L +LA L +   R+AE EPL+
Sbjct:   41 GDYERAVVAVKKSLAVAEKTVGTDHPDTATSLNNLAELYRDHNRYAEAEPLY 92          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1111.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI00144AF7F09.760e-740.32TPR-like protein n=1 Tax=Macroventuria anomochaeta... [more]
A0A1Q8RYS3_9PEZI8.690e-639.34Regulatory protein AfsR n=1 Tax=Colletotrichum chl... [more]
B4VUB5_9CYAN9.290e-644.19Tetratricopeptide repeat domain protein n=1 Tax=Co... [more]
A0A433PUW4_9FUNG9.350e-657.14TPR repeat-containing protein (Fragment) n=1 Tax=J... [more]
A0A7S3NLJ5_9STRA1.060e-554.76Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3NLG6_9STRA1.780e-554.76Hypothetical protein (Fragment) n=2 Tax=Aureoumbra... [more]
A0A1G0MZL8_9DELT2.940e-545.76Uncharacterized protein n=1 Tax=Geobacteraceae bac... [more]
A0A3B8JJF2_9CYAN2.950e-548.84Tetratricopeptide repeat-containing protein (Fragm... [more]
A0A2T5K0N7_9PROT3.990e-544.23Tetratricopeptide repeat protein n=1 Tax=Nitrososp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1111contigA-nodosum_M_contig1111:141689..142237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6500.XP_005105697.1
PFAMsCHAT,KH_1,NB-ARC,SAM_1,SAM_2,TPR_10,TPR_12,TPR_7,TPR_8,UVR
Model size254
Max annot lvl2759|Eukaryota
KEGG koko:K16458
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.04e-06
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size252
COG categoryC
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866506.2332723-CDS-A-nodosum_M_contig1111:141688..1418141680866506.2332723-CDS-A-nodosum_M_contig1111:141688..141814Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1111 141689..141814 -
1680866506.2456324-CDS-A-nodosum_M_contig1111:142111..1422371680866506.2456324-CDS-A-nodosum_M_contig1111:142111..142237Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1111 142112..142237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1111.5.1prot_A-nodosum_M_contig1111.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1111 141689..142237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1111.5.1

>prot_A-nodosum_M_contig1111.5.1 ID=prot_A-nodosum_M_contig1111.5.1|Name=mRNA_A-nodosum_M_contig1111.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=84bp
GKYDEAKRLYERAVEIWEKTVGSDHPETAMALLSLAALLQAQGRFAETEP
LHTRSREILEKSFGPGSLPMATWLTNRAELLDVQ
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mRNA from alignment at A-nodosum_M_contig1111:141689..142237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1111.5.1 ID=mRNA_A-nodosum_M_contig1111.5.1|Name=mRNA_A-nodosum_M_contig1111.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=549bp|location=Sequence derived from alignment at A-nodosum_M_contig1111:141689..142237- (Ascophyllum nodosum dioecious)
GGCAAGTACGACGAGGCCAAGCGTCTCTATGAACGGGCCGTGGAGATCTG GGAGAAAACCGTAGGCTCTGATCACCCTGAGACGGCGATGGCGCTCCTAT CTCTGGCGGCGCTGTTGCAAGCGCAGGTGGGAGCCGACAGCATGTTTCAG GAGTGGGTTTCTACTGCGTCAAGAACGCGAAGCAACCAGACTAGACTGTC TCAGAGATTCTATCCAATAGTGGACACGATTTCTTTACGTCTGGAGATAA TTGTGCTCTTGCGACATTTAGTTCGTGTCGAGCTTAGTAGACCATTTGAC GCAGCCATGCGCACATACAGTCTAGGTTGTTGGACAATATGTTCGAAGCC ACGCATTTGCTAGTGTAATGTGCACTGAATCGTGTTTTCAGCTGAGCTCG ACGTGGTTGCGTATCTGCATTAGGGAAGATTTGCCGAGACCGAGCCACTC CATACAAGATCGCGGGAAATTCTTGAAAAATCGTTTGGTCCAGGGAGTCT TCCTATGGCTACATGGCTCACCAACCGCGCGGAGTTACTGGATGTACAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1111:141689..142237-

>mRNA_A-nodosum_M_contig1111.5.1 ID=mRNA_A-nodosum_M_contig1111.5.1|Name=mRNA_A-nodosum_M_contig1111.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at A-nodosum_M_contig1111:141689..142237- (Ascophyllum nodosum dioecious)
GGCAAGTACGACGAGGCCAAGCGTCTCTATGAACGGGCCGTGGAGATCTG
GGAGAAAACCGTAGGCTCTGATCACCCTGAGACGGCGATGGCGCTCCTAT
CTCTGGCGGCGCTGTTGCAAGCGCAGGGAAGATTTGCCGAGACCGAGCCA
CTCCATACAAGATCGCGGGAAATTCTTGAAAAATCGTTTGGTCCAGGGAG
TCTTCCTATGGCTACATGGCTCACCAACCGCGCGGAGTTACTGGATGTAC
AG
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