mRNA_A-nodosum_M_contig1111.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1111.4.1
Unique NamemRNA_A-nodosum_M_contig1111.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1111.4.1 vs. uniprot
Match: A0A3B1E2Q6_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1E2Q6_9ZZZZ)

HSP 1 Score: 49.7 bits (117), Expect = 5.600e-5
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   22 YADAEPLYARKQAILEKALGHDHRDVAATLDTRAFCLKKQGRDAEA 159
            YA AEPLY R  AILEKALG +H +VA TL+  A   +   RD EA
Sbjct:    1 YAQAEPLYTRALAILEKALGLNHPNVATTLENMAVLFRATDRDDEA 46
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1111.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3B1E2Q6_9ZZZZ5.600e-556.52Uncharacterized protein (Fragment) n=1 Tax=hydroth... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1111contigA-nodosum_M_contig1111:134437..136864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G722
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size647
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons5
Evalue0.000376
EggNOG OGsCOG0457@1|root,KOG4658@1|root,KOG1840@2759|Eukaryota,KOG4658@2759|Eukaryota
DescriptionADP binding
Cds size534
COG categoryS
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1111.4.1prot_A-nodosum_M_contig1111.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1111 134550..136864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866506.057536-UTR-A-nodosum_M_contig1111:134436..1345491680866506.057536-UTR-A-nodosum_M_contig1111:134436..134549Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1111 134437..134549 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866506.071924-CDS-A-nodosum_M_contig1111:134549..1345601680866506.071924-CDS-A-nodosum_M_contig1111:134549..134560Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1111 134550..134560 -
1680866506.0806727-CDS-A-nodosum_M_contig1111:134870..1350001680866506.0806727-CDS-A-nodosum_M_contig1111:134870..135000Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1111 134871..135000 -
1680866506.0914018-CDS-A-nodosum_M_contig1111:135642..1357681680866506.0914018-CDS-A-nodosum_M_contig1111:135642..135768Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1111 135643..135768 -
1680866506.1008732-CDS-A-nodosum_M_contig1111:136273..1363991680866506.1008732-CDS-A-nodosum_M_contig1111:136273..136399Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1111 136274..136399 -
1680866506.1108766-CDS-A-nodosum_M_contig1111:136723..1368641680866506.1108766-CDS-A-nodosum_M_contig1111:136723..136864Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1111 136724..136864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1111.4.1

>prot_A-nodosum_M_contig1111.4.1 ID=prot_A-nodosum_M_contig1111.4.1|Name=mRNA_A-nodosum_M_contig1111.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=178bp
MTLSQREYADAEPLYARKQAILEKALGHDHRDVAATLDTRAFCLKKQGRD
AEAVVLHDKAVRILEDTLGSEHPDVVKSLHSLATTLKTLDKLPEAHAVFE
RITAILVKTHGTEHLRVADYLSIRARLLVKLGKQGDAVPLLERALSITTK
KIGEHHKNTVKIRDFLQTIREDTQGES*
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mRNA from alignment at A-nodosum_M_contig1111:134437..136864-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1111.4.1 ID=mRNA_A-nodosum_M_contig1111.4.1|Name=mRNA_A-nodosum_M_contig1111.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2428bp|location=Sequence derived from alignment at A-nodosum_M_contig1111:134437..136864- (Ascophyllum nodosum dioecious)
ATGACCTTGTCGCAGAGGGAATACGCGGACGCGGAGCCCCTGTACGCCAG
AAAACAAGCCATTTTGGAGAAGGCCCTAGGACATGACCACAGAGACGTGG
CCGCAACGCTCGACACCCGGGCGTTCTGTTTGAAGAAGCAGGTGAATATC
GATTGAATGCGCCGCAGGAGTTCCGGGTGCTGCTTGATTGCATGTTCAAG
CTATATCTAGACCTGTCTAATGCCCCAATATACGGCAAGATCTCCATCGG
CATTTAAAAGTGCACAAGATTGTTTTCCGCGACCCTTTTGAACGTTTCCT
TAATCTTCAGCAACCTTAACATCGAGGAGAGACAACTCCGCACCCCGATC
ATGGACAACAAGCTTGCATAGGTTCGACTCAAAGCACTGCGTGTGGTTTG
ACCACGTACACATTTTCGCTGCATTCTGTGTTCGTGACACTTGCTCGTCA
CCCTTTGCTTTGTAGGGTAGAGATGCAGAGGCTGTGGTTCTGCATGATAA
GGCGGTGCGGATTCTGGAAGATACTCTCGGTTCGGAACACCCGGACGTGG
TCAAATCTCTCCACTCTCTGGCGACTACATTAAAGACACTGGTACGCTCC
GCTTGGAGCCTTTTGTGACACGGCTGGTAATGACAAGCCATGGAGTACAA
TGTGCTGTTATATTTTGAGGAAGCCTATAGCCATTGGCGACACCATTTAA
CGACTGGTCGCTGTCATGGTATAAGAGACGGGTTCAGTAGCATCGGATTA
TTCCCCGCGGTTGCAATGTTTCAGCGCTGCCGCGGAATCTGAAAGGTTTG
TTGTTCAGGGTAGTAATTATGGCCCCGTGTGGTCCACTCACTGCATAAAG
GTATGCGACCGTTGCGATGTAGGCTTGCTGTCGTAGATGATCCCGCGCTT
CACGTTTGAAACCTGGTCATGAAGGACAACATGGTTTGGGCAGCTTTGAA
GTTTGTGACCCATATGGCTGAACTCGCCCAACCTGGCTTTAGAGGTCTCA
GCAGTTGAAGGTCTATCAAGTATCGTGTTCCAAAGAATCACTGCAAACAG
TCGCCGCATCTCCGGATCCAATCCTTACTTCCACCTTACTTATCAGGACA
AGCTCCCTGAAGCCCATGCTGTCTTTGAACGCATCACGGCGATTCTTGTG
AAGACTCATGGTACCGAGCATTTAAGAGTTGCCGACTACCTCAGCATACG
AGCGAGGTTGCTGGTGAAGCTGGTGAGAGCAGTGTACGGCAAGTGCGTGG
AACAACTGACTGGTTGTCGTGTAAGCTTTTGCCCGATAGTGCACCAGATC
GAGTGAAGTTGACTTCACTAGGTGGACACGACGAGACGTAATACATCCCC
TGCGCGCTGCAGCCGTTGCATTCAGGCGGAAGGCGTAAGATTGCGGGAGT
GTAGATCTCTCGCCATCAGGATGTGGGTTACAAAAAATGAAGATAAGGCT
CTTCGTTTGGCTTTGTTCTGTTTGTTCTTAGCCGAGGAGAATTACGCTGA
TGCCATGGCTCTGTGCGAGCGGGTACAGGCCATCCTTGAAGAAGCACTTG
GCTCCGATTTCCCATTTGTGGCGGATTCGCTCAAGACACGCGTGGAAGTG
TTGGTGGCTCGGGTGAAAGGCCTCGGGCATTTTAGTCACTTAAGTCTCAA
ACTGTCCTATGCTGCCTTGTATTAGGCCACGAACCGCCTTCATCTGACGG
AACTCTCAGCAGGCAAAACTCCCCCATAAATCTTGTTACGGCTCTATCTA
GATATTAATAGTACGCATCTGCCTATAATATCCTTGCTGGCATTGGAAGG
CGACAAAATTCTGGAGCTATGGTGCATGTCTCTGTCTCTTTGTTGATGAC
GCCCGACATCGCAGGGCAAGCAAGGCGATGCTGTACCGCTCTTGGAAAGG
GCGCTATCAATCACGACAAAGAAGATTGGCGAACACCACAAGAATACCGT
CAAGATCAGGGATTTCCTGCAGACTATTCGCGAGGACACGCAAGGTACGT
CATAAAGCACACGACTGCGAGTTCAACGGAAAACCCTTTATAGTGGGATC
CTCGTGTAAGTCTTTTCGCCTACATGAAGAATGATACTCTCCGCAAAGTC
AGGGTGTGTCGTGTGCACCCTGCAATCGTTAGCCGAATACAGTTTGTCCT
TGGCGAAATAAGCACTAAACTCGTACAAGTGGCACGGCGATACGCGGTGC
TCTGCTCAGCGGTTGCGCGTAAGCCTTCGTATTGGCTCTGCTGGCCTGTC
TTCTGCTCTCTAAAATGTTTTGATTCAATAACGCTGCTTAACAACACGTC
GCAGGTGAATCCTAATGGGCCAGCTCTGCCACTCAAAGCGCTCTGGAAGT
CAAGCATTGGCCAAGAGTTTAAGGGAGGAACGAAGCGCATCTCATGCACA
GCTTCAAAAGCTGAGCTAGTTTCCCGTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1111:134437..136864-

>mRNA_A-nodosum_M_contig1111.4.1 ID=mRNA_A-nodosum_M_contig1111.4.1|Name=mRNA_A-nodosum_M_contig1111.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at A-nodosum_M_contig1111:134437..136864- (Ascophyllum nodosum dioecious)
ATGACCTTGTCGCAGAGGGAATACGCGGACGCGGAGCCCCTGTACGCCAG
AAAACAAGCCATTTTGGAGAAGGCCCTAGGACATGACCACAGAGACGTGG
CCGCAACGCTCGACACCCGGGCGTTCTGTTTGAAGAAGCAGGGTAGAGAT
GCAGAGGCTGTGGTTCTGCATGATAAGGCGGTGCGGATTCTGGAAGATAC
TCTCGGTTCGGAACACCCGGACGTGGTCAAATCTCTCCACTCTCTGGCGA
CTACATTAAAGACACTGGACAAGCTCCCTGAAGCCCATGCTGTCTTTGAA
CGCATCACGGCGATTCTTGTGAAGACTCATGGTACCGAGCATTTAAGAGT
TGCCGACTACCTCAGCATACGAGCGAGGTTGCTGGTGAAGCTGGGCAAGC
AAGGCGATGCTGTACCGCTCTTGGAAAGGGCGCTATCAATCACGACAAAG
AAGATTGGCGAACACCACAAGAATACCGTCAAGATCAGGGATTTCCTGCA
GACTATTCGCGAGGACACGCAAGGTGAATCCTAA
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