mRNA_A-nodosum_M_contig1109.19.6 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1109.19.6
Unique NamemRNA_A-nodosum_M_contig1109.19.6
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1109.19.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1109contigA-nodosum_M_contig1109:250166..254094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size529
Hectar predicted targeting categoryother localisation
Exons4
Cds size345
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1109.19.6prot_A-nodosum_M_contig1109.19.6Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1109 253099..254022 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866498.998038-UTR-A-nodosum_M_contig1109:250165..2502441680866498.998038-UTR-A-nodosum_M_contig1109:250165..250244Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1109 250166..250244 +
1680866499.0065951-UTR-A-nodosum_M_contig1109:253065..2530981680866499.0065951-UTR-A-nodosum_M_contig1109:253065..253098Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1109 253066..253098 +
1680866499.0496514-UTR-A-nodosum_M_contig1109:254022..2540941680866499.0496514-UTR-A-nodosum_M_contig1109:254022..254094Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1109 254023..254094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866499.0223444-CDS-A-nodosum_M_contig1109:253098..2532561680866499.0223444-CDS-A-nodosum_M_contig1109:253098..253256Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1109 253099..253256 +
1680866499.0316637-CDS-A-nodosum_M_contig1109:253479..2536191680866499.0316637-CDS-A-nodosum_M_contig1109:253479..253619Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1109 253480..253619 +
1680866499.0402222-CDS-A-nodosum_M_contig1109:253975..2540221680866499.0402222-CDS-A-nodosum_M_contig1109:253975..254022Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1109 253976..254022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1109.19.6

>prot_A-nodosum_M_contig1109.19.6 ID=prot_A-nodosum_M_contig1109.19.6|Name=mRNA_A-nodosum_M_contig1109.19.6|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=115bp
MVKKVANAPDAPPFPAAQLLPKANALFGISENEEGKPSKTWSGVADGSIF
RNTLWESLAFAFTDSDGPYADLKHMKAKKVTLEDAERALMPYLGDLQKPF
VPETQDVDEQSSDT*
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mRNA from alignment at A-nodosum_M_contig1109:250166..254094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1109.19.6 ID=mRNA_A-nodosum_M_contig1109.19.6|Name=mRNA_A-nodosum_M_contig1109.19.6|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3929bp|location=Sequence derived from alignment at A-nodosum_M_contig1109:250166..254094+ (Ascophyllum nodosum dioecious)
ACCAGTAGCAGTAACAAGAACCGCAGCCGAAGAGCAGCAGGCGTCGAGTT
CTACAGATAACATTGGTCGTCCTCAACAGGTGCGCACTTCTTCGAGCCCG
GCTCATGAGAAGGTAGGCGCTTTGCCATGGTTCGGCCGGTCGAGAAGAAA
TTTTTGCCTCGAACGAACTCTTCAGCCAACGGAAAAATTAACTTGAAGAT
TATATCATACTGTTGATTCAATGTTACTATCAATACTGTACCTTACTTAG
CTGCACTATTAATAATATAATATTCTAGTCTGGTGGGTCTAGAAAATACA
AGAAAAAACTACTTCTGGAGTTGAGCCTATACACAGTACTAAGCTTCATA
CACTTGATATTGGTACAATATGATGAACGTTTTTTGTATTTTCAGTACCA
CAGCCGCTTCCTCTTGTATGGAGAGTACTATTACCGTCGCACGTTTTTCC
CTTCCGGGTTGTGTTTTCCTATTAATATTAATATTAATACCTTGTGATCA
CTGGAACTTGGATGTTTCTCAGACACCTGATATTTGGCTTTGTTTATTGG
TACAACAGACAGGTACTAATACGTTTATAAACGGTGGACTCTTGGCGGCA
GTGAACGCCATCGGTACACATTTGCGTGACCAGATAAACTCGGGACTGAC
CCGACGGTGTATGATGCTGGATGCCGCCGCGGAACTCAGGAGGAATCCCG
TAAGTAAGGACCAGATAGCCTGAGTATGGAGAATGAGCAGGCTGACGCGG
GACGGGACGGCTGAACCCGTCCCGTGAGACCAAATTCCCAGGCACGTACG
GGGACAGGGGAATATTCATTTTCCCTGTTCAGCTGACCACGAGCAGGATT
GGCAAGCTTACCCGGTTGATCCATACTCTGCTATATGTGATGACCATACA
TCCTATTATTGTATACTGTATTATTATTAAAGTATTTTCAATATTGTGTT
GTTTGGGTTTTGTCTGGTATTATAAGTGTACAACATAACGGAAGGTTTCT
CCCCGGTATTATACTATTGACCCAATGTTACTACCTTCGGGGAACCCGTT
TAAATGCCACGAAGAGGTTTTGTATTCGGAGCCTATGATACCACCCACTA
TAATTTCCCCTCTGACTGAAGGATGCTTTTAAGGTGTAGATGCGTTCAGA
TTTTTCTTTAAAGAACCAAGCCCTATTTATGTATGGCCCGAAGGCAATAT
TATCGTATAGTAtgTGTTTTTTTTTCCCCTCCCCTCCGATCAGATCGGGG
GAGGTTTTCTCGTCTGTTATTTTTTTCCTCTCTTTCTCTTCTTTTGTTTG
TGTTTTTTGGATGTAGCGATGGTATGGAAAGGGAAGCCTGCGTCTGTGAC
CACGGGTTCGAGAGATCGGACTTCTGTGCGGAAATAATAATAATAATAAT
AATAATAATAATAATTACTATCCTCTTAACTATGTACTACATTGTTTGTT
TGGTTATGCTTGGTGGCTCTGTTTATGATTAATATAAATAGAGGCTTTGC
AGTTATGGCCTATATAACAGTATATTATTTATATTGTTACTATTAATACC
ATGTTTGATGGTGTACTACTGTACATTGGTTTCTGTACATTGGTTTTGTG
GTTACTGTTTTTCTGGTATCCCTGCATGGCGATTAATGTAAGTGTACAGT
ACAACGGTGGGCTTCTCCCCGACATTATACTGTTGACCCAATGTTATTAC
CATCGGGGAACCCCTTTAAACGCCATGAAGAGGTTTTGTATTTGCAGCCT
TTGATCCAACCTAAATGTTTGGACATTTCCCCCCCCTGTACTGGGGGATG
CTCAGAAGGTCTAGGTGCGTTTTTATTTTTATTTTAAACTCATACAGAGT
ATGGTGAGAGTTCAATCAAACAATCACCGATACTGTACAAAAGTTTTGTT
CTCATGCCAAAAATAGAATTTGGTTAGGATATGCCTAACTAACCTCTGCT
CATTCATGGTTCCGGCTGGCGTTGCAATTTCCACGCAGACGCTTTCATAA
AATGTATGGAGTCGCCGAGAACGCGTGTTGTCGTACGACCGTGTCGAAGA
GCGGTGTGCCATACCATAGAGAAGGTGGTCGCTATGATTCCGAACCGGAA
CGATCTCAGCGAGGAGCGGTTGAGGATGACGATTCTCCAACAACTACGAT
CACCTGTCTCTGCACGAACGGCAAAGAAGGTTAAAACAGACGCCGTTTTC
GTGCAGGTTCGTTTCCACGGATCGACTTCACGTCCAACTTAACACATCGT
AGGCATGCCTTTTCACCAACGCACCCCCACCCCCACGAAAACACCTCATG
GCTTCATCCTAAACCCCTGCTTCGATTTCCTCCGTGCCGACCGCGTACTA
TCTACTATCGGATTTAAAAGGTCTTCCGTGAGTTCGAGGAGATCTTCTTC
CAGCCCTCGGTCGAAGCTCACCAGGGCTACCACGGCAACCGCATCCCGGC
AACCCTGACATGGCGCGATATCACGGGGAACAGCGAAAGCTTCCAGGAGG
CGTTCCGCGGAAAGGCATGTACTTCTTTATAGTTGTTGTTGTTCCTCAGC
ATTCAGCGTATTGTTTGCCAACCCGAAAGAACTACTTTACACGGCGGAAA
AGAGAACAAAAGAAAAAGTATGGCAGCATACCCCCCACCCCCTGCACAGC
TCCTTCCGAGAAAAAAAAAAGACGCAACGCTTCTACAGCCGCCACGCATA
GTACGCGGTAAGGAGTACCCTCCATTCCACAATACACCATATCGCAGCGG
CCAAAACCGTTGAATCATTATGGAGCATAACTCATGAGTTTCTTCACATG
TTTTCATAGCACTCTCTCTTTCTCTCATGAATACCTTTACAAGTTTCTCT
CTTTCTCTCCCCCCCCATCTCTCTCTCTCCCCGTTCCCCACGAACGATAG
GTAATACCAACGGCCGTTGACACCACGCTGAATATGGTGAAAAAGGTCGC
CAATGCGCCCGACGCCCCACCTTTCCCTGCCGCGCAACTCCTACCGAAAG
CCAACGCCCTGTTCGGCATTTCCGAAAACGAAGAAGGAAAGCCGTCCAAA
ACGTGGAGTGGCGTCGCTGACGGAAGCATATTTAGGAACACGTAAGGCTC
AACTTTGATTAGGTGTACGATAGCGATATATTACACTGAACACGCGTGTT
ACACCACTTGGAGCTGCTTCGAAAGTCAAGAAAGAAATAATGTTGAGAGG
CAAGTGTGGCCGGAGGGACATGCCTCAGTCGTGTCTAGTATTCCTCTCCT
TTGGGTTAATACTACACGGCGCACCATTGAGAGCTAACGCGTCGTACACT
TCAAAATAAAACAGGTTGTGGGAGAGCCTCGCGTTTGCCTTCACTGACTC
GGATGGCCCCTACGCCGACCTAAAGCACATGAAAGCAAAGAAAGTCACCC
TTGAAGACGCAGAACGAGCTTTGATGCCTTACCTTGGCGACCTTCAGAAA
CCCTGTGAGTATTTATAAACGATCAGTGTCTTGACTGTTCACCACATTGT
CTTGTGCATTAGGCTCCGCGCTGAAAACGGCTACGATGGTATAGAAGTAT
GCTTTACATTATTGATCCCGAAAACTTCGAGCCCTCTGCCGCAAACCCGT
CTCGCGAGACCAAATACTCAGGCTCCCACGGGGAAAGGGAAATTATCATT
TTCCCTGATCAGCTAACCACGAGCAGGATGAGCAACCTTACCCGATTGAT
ACATACATACTTCGAATACTCGACACGCAAGTATTAGTCTCTTGAAAATG
ATATCCGTCACACGTGAATATCGCCGCGACTTGCCTTTCCTGCATCTTTT
CTTTGAACAGTTGTGCCAGAAACACAAGACGTAGACGAACAGTCCTCCGA
TACTTGAGTATGGAAACGGCGCTATCTCCGCACCAGCGAGCCATGGAGCC
GAAGAACATTTTTCGGCAGCTTTCGATTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1109:250166..254094+

>mRNA_A-nodosum_M_contig1109.19.6 ID=mRNA_A-nodosum_M_contig1109.19.6|Name=mRNA_A-nodosum_M_contig1109.19.6|organism=Ascophyllum nodosum dioecious|type=CDS|length=345bp|location=Sequence derived from alignment at A-nodosum_M_contig1109:250166..254094+ (Ascophyllum nodosum dioecious)
ATGGTGAAAAAGGTCGCCAATGCGCCCGACGCCCCACCTTTCCCTGCCGC
GCAACTCCTACCGAAAGCCAACGCCCTGTTCGGCATTTCCGAAAACGAAG
AAGGAAAGCCGTCCAAAACGTGGAGTGGCGTCGCTGACGGAAGCATATTT
AGGAACACGTTGTGGGAGAGCCTCGCGTTTGCCTTCACTGACTCGGATGG
CCCCTACGCCGACCTAAAGCACATGAAAGCAAAGAAAGTCACCCTTGAAG
ACGCAGAACGAGCTTTGATGCCTTACCTTGGCGACCTTCAGAAACCCTTT
GTGCCAGAAACACAAGACGTAGACGAACAGTCCTCCGATACTTGA
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