mRNA_A-nodosum_M_contig1106.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1106.3.1
Unique NamemRNA_A-nodosum_M_contig1106.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1106.3.1 vs. uniprot
Match: D8LQY7_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY7_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.980e-8
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 AVIGAQEGRLHESEVLLTRCLEAQKTIHGPDHPEVALVLDRLAEVIR 141
            AV+GAQ GRL E+E +L RCLEAQ+ +HGPDHPEV LVL +L ++IR
Sbjct:  740 AVVGAQRGRLGETENILRRCLEAQERLHGPDHPEVDLVLGKLHDIIR 786
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1106.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQY7_ECTSI2.980e-865.96TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1106contigA-nodosum_M_contig1106:79772..85748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQY7
PFAMsTPR_10,TPR_12
Model size1547
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.88e-09
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size1545
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866496.3030972-CDS-A-nodosum_M_contig1106:79771..798621680866496.3030972-CDS-A-nodosum_M_contig1106:79771..79862Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1106 79772..79862 +
1680866496.3149498-CDS-A-nodosum_M_contig1106:84115..848871680866496.3149498-CDS-A-nodosum_M_contig1106:84115..84887Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1106 84116..84887 +
1680866496.327449-CDS-A-nodosum_M_contig1106:85064..857461680866496.327449-CDS-A-nodosum_M_contig1106:85064..85746Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1106 85065..85746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1106.3.1prot_A-nodosum_M_contig1106.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1106 79772..85746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1106.3.1

>prot_A-nodosum_M_contig1106.3.1 ID=prot_A-nodosum_M_contig1106.3.1|Name=mRNA_A-nodosum_M_contig1106.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=515bp
AVIGAQEGRLHESEVLLTRCLEAQKTIHGPDHPEVALVLDRLAEVIRAQD
ALYTVRGAADAPNNNAGLMENGDMSMTSWLDSNLTSRGSSWFDSVPSVSR
RDMVDDGDEKNADDTAPAEKVFENEVGDVTEALVEKGAGKEAPTKSGLAE
EESQTLRQGKHPAVTASTAATVPPASIPAASASAADVVDSAAAAVAVSAS
APCAVQRKKVPRVDGMTGEIRIGPHFAVDGDVGGAKEAKASSSPPTPAVG
TGTARRNSGKVRGGSGTGSLADLRSGDSSRGRSRRRRRRGKGKNKGRSKS
NSSDSSSSSISCFSANSNASKDRARKRGGGGGGGGGRRQHRHHKPQRRRR
PRGRGSNVNRTPIPAPPQGRPTSLEPFPPEKSKASRKTLVSSAITMSARA
ATSDSHSSASPTRRERERPLQHLCRQNGRRLLTLKSSLNDHDDMSMASSD
AHPSLRSNLSSTVASRSFEKGDIGTSKGMAGEGVEDVHPSSEDGGVITAS
KSSREESNCWSDGVF
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mRNA from alignment at A-nodosum_M_contig1106:79772..85748+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1106.3.1 ID=mRNA_A-nodosum_M_contig1106.3.1|Name=mRNA_A-nodosum_M_contig1106.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5977bp|location=Sequence derived from alignment at A-nodosum_M_contig1106:79772..85748+ (Ascophyllum nodosum dioecious)
GCGGTGATCGGTGCTCAGGAGGGGAGGCTACACGAGAGCGAAGTCCTCCT
TACGAGGTGCCTTGAGGCGCAGAAGACTATTCACGGCCCCGGTGAGAGAA
CCGATGGATCACGTGCCTAAATATTTCTATTACGGGTTGGGGACTGCAGA
GGTGGTGACTGACGAGGCGTTGATGCGTCTTCCGAGTCTCCCAGGAGAAA
AGTGTTGAGCTGCGCTTTGCAGTCACGATAATACTATTGGACTATTATTA
GTGCTTTATACTATCGGACTATTATTAGTGTTCTAATACCATTATACTAT
TATTAGTGTGTAATACTTCTTGCCCTATTATAAGTGTGTAATATTTTTGT
ACTATTATCAGTGTATAATACTTTTGTATTATTATTAGTGCATAATACTT
ATACTAATATTAGTGTATAACACTTGTACTGTTATTAGTGTGTAATACTA
GTACTAATATTAGTGTATAACACTACTTGTAATTATTAGTGTATAATATT
TTTGTACTGTTGTAGGCCGGTCGACCCCGGTAGCTCAGTTGGCACCTCGT
AACCTTCTGACACGTTGGGACGTGAGTTCGATCCCGGCAAACGGGATTTT
TCTCACTAAAAACTAAAAAACCAAATAAAAATGCCCAACGGGTGGAGAAC
GATTAATTCGTTAGTACACAAAATTCGACTTCACGGTCGACGAGGGAAAG
GAATGGCTGAATCCTTCTCGCGACAAAAATCAAGGCACGCACCGTAGAAG
GAAGGTGGATTAAAAATCCTGTGTGACCTTCCTCCTGTGTGACCCCGGCT
GGTACGTCCATTGATGTCCAGAATGGATGGGAAGAAAACACACACACACA
CACACACACTGTTATTAGTGTATAATATTTTTGTACTATTATTAGTGTAT
AATACTTTTGTATTATTATTAGTGCATAATACTTCTTGCACTGTTATTAG
TGTATAATACTTGTACTGTTATTAGTGTATAATACTAGTACTAATATTAG
TGTATAATACTACTTGTAATTATTAGTGTATAATATTTTTGTACTATTAT
AAGTGTACAATACTTTTGTATTATTATTAGTGCATAATACTTCTTGTACT
ATTATTAGTGTATAATACTTGTACTGTTATTAGTGTATAATACTAGTACT
AATATTAGTGTATAATACTACTTGTAATTATTAGTGTATAATATTTTTGT
ACTGTTATTAGTGTTTAATACTAGTACTAATATTAGTGTATAATACTACT
TGTAATTATTAGTGTATAATATTTTTGTACTGTTATTAGTGTATAATACT
AGTACTAATATTAGTGTATAATACTACTTGTAATTATTAGTGTATAATAT
TTTTGTACTGTTATTAGTGTATAATATTTTTGTACTGTTATTAGTGTATA
ATACTTTTGTACTATTATTAGTGTATAACTACGAAGTATTTTCGCAAGTG
TATAATTACCAGGGCTTTATGGTATGGTAAAGACAAGCCCGCGGCAGGCA
GATTTTTTGGGGGTTACCATCACTTTCAATGGGATGGGATCAATCGCCCG
TGGATGGTAATTGTTGTTGTTGATTCACACATTCAGCGTATTGTCCTTGC
AACTGAAGAAACTACGGTGACACAACAAGTCAGCCATAGACCTATCAAAC
GCCAATCCCGCTTGTGGTCACAAAGAGGTACGAAGGTCAACGGGTCACAT
CATGGTGACAACCCGCTACTCAGACCAACAGGGATCCAAATCGCGACaAA
AAGTTATGCGGCTCTACAAGCAATGGCACCGACCAATATCAAAACGGTTC
ATCAAACCTCCTTACTCCATTCGAGAGCAACCTCGATCGACTCGGAATGT
TGTCGCCTACCCACGACCAGCGTTCTCAGCAAAAAACCGGAAAAATTACG
CTCCAACCAGTTTTGATCAACAAGTCCAAGTTTCTCAAGGCCACACATTT
TGTACAGAAATAAGGAAAATCGAAATACCGAGGTCCATGGTGGTGGAGGC
CTTGAACTGGTGAAGCCGGCGCGCGAGCCAGCATCCAGCCGTCCAAAGCC
CTGTGCATTCTTGAAAAAGCCCCACGAATCTTGCCCGTTCGCCGCTCCTT
GTGGCCCTCGTAGGAAGAAAAATGACCGTGGTCAGAGATCAGCTTTTCCC
TCAGAAACCTCCCGGTTCAAGCCTGTGATTCTCGCGCACAGGGGTTCAGC
CCTCCCCTGGCTCGTCAACGATCGAGCTGCCCTCCGCCTTCGCCGAATCT
GGTGCGTACCCACCCGATAGTAGAGTACTACCAGGCTCTCCGCGACAGTG
CTCCCTGCCTCTCGCGTGCCGCCACCCTCCCGAAGGGCACCAAATGGGAT
GGGATGAAACTTCTGTGTGTGGTGATGGGATGGGACGGGAAATTTCTGAT
GCTCGAATGGGATAGTATATGACACGTGATGAAAATTGCTGGGATGGCGA
TGGAATTGAGTGGGGGGTGACATAGTACGTGCAGTGATGGTGTCTCCCGG
GATGTTATTAGGCTCTGTTATGGGCACTATTCACTTTTTACCTATTTAAT
GGACCATGGTGTGGGATGGGAAATATGATGGCACACGATGTATGCACCAC
TAGCCCATGGTAGACTTTAGCGCGATGGCGAGAACAATAACATAACATTA
GTTTGTAACTTGTAATATATTCCATAATACTATCTACTATCTCTACCCCC
TCACCATTTTTATCATTCTTTACGCAGTTACACTTGGCTGTGTTTATTGA
TGTTTCCGTCATTACCAACCTAATAACTCAAGCGCCATCACCAAAGCGAA
AAAAAAGCCCCTACGACAGATTCACGACTGTACCCGCCCGGGCGTTCTGG
GCAGCAACTGATGCCGCTTCCTGTGCGTCCCCCTTGACCTTTAAGGCCTG
AAGTTCCTGTTCTACCCCCTCAAATCCGGGACTAAGGTGCCTGTTGAGCC
TGAGCAACAGCATCTTATCTGTCTTGTGACCCAAAGTACCGGCGCGCATA
TCACTAAGGACCTGCTCAAGGGCGGAAAAGTTCCTCAACTAGTGGTATCG
ATGCCTGCATACAACCTTGCAAGCAACCCAATATGCGGCCAGCAGGCAGG
CACTACAACCTTTCCCGACGGGTCTACCCCATCCGTGCCCCGCGCTTCCC
AGTGCTGGAGGAAGTCGAACTTGAAGTCGCTCTATCTCACGCAGAGCGGC
GTCTTTTCGAAGCTCGGGCGCGTCGACGTCACCGGCGGGGCGGGCAACCT
TCCTTTTTTATGTCCGCTCTGATCTTGTTCATTCTGGACATGAAGGGCTG
GGCCCCTGCTTCCGCCCCGGTGCCCCCGACCCCCCCCCCCCCTCTCCATG
CCGTCGACGTTTCTTACGCTGAAAGTAACATTGCCGCTAAAACTCGAAAA
TTTGTTCTCCACTAGAGCGCGCACTTCGTTCTGGAGATGATTTTTTCCGT
TTAATCAATCGGTCGTATAGAGGGACTTGAAGCGAGGGTCGACCAGCAAA
CAAATCTTCTCAACGTCAAGGGCCCGTCCCAGCCCCCCTTATTTTCTGAA
AGTCTTGCACCAGAATATTGAGTAGACCCTGTACTTCGGTGAGAAGCTCC
GCCACGGCCGTTGCCGTGCGGGGGCCATCGCAGGGGTCCAGACTCCGAAT
GTCCTGGGTGTCGAGGGACAACGAGGTCTCCAGCACACAGCCAAATCGTT
GATTGCCTTGCCGACGAAGGCATGGCGGCCCCCTTGTAAGAAGTTTTATC
ATGGTGTGTTGGGTGGGATGGGAGCAGTTGTGGGAGATGGTATGGTATGA
CGGTGGTATCTGAAAGTTGGGTGGTGATGGGACGGTAACTGGTGGTGGGA
CAGAACCAAAGGTTTCCATCCCATCCTATTTCGAAGGGAATACCATCCCA
ACACATTTACCACGTAAAACCCTGATAATTACGAGGCATTTTCGCGCTCA
CATTTTCATCAACATACGCTACTAATACAAGGGTATATTGAAGATTCCGT
TCTGTACAGCATGCCTGGAAGATGTGGTATACAGTACTGAAATATATAGT
AAAGCAGTTAGTCGTGCGCTAGAATTATGTTTCAGAACAAAACGATGGAA
TCACTTCCTAATGTCGTGATTTTAAATGCTCCGAGGCCCTGTTTAAACGC
ACCTCTGTAGTATTGATATTGTCCAAACAGTCGTCTCTTCGGTTTTCCTA
TAGTCTTTGCTTTTACCCCGTTCCTCATCCGTGAACTCCCCGTGTGATTG
CCTCCTTGACGAGATACCACCTCCCCCCACTGAGGCGTTTTTTAAATTTA
TCTCCCGTTATCCTCTTGTCTGTCTGCCACCTCTGAGAAACCAGACCACC
CAGAAGTAGCGCTTGTCCTGGACCGGCTGGCTGAGGTCATCCGCGCCCAA
GATGCGTTGTACACCGTGAGGGGGGCTGCCGACGCCCCCAACAACAACGC
TGGGTTGATGGAAAATGGGGACATGTCAATGACTTCGTGGTTGGATAGCA
ACCTCACAAGCCGCGGCAGCAGCTGGTTTGATTCCGTCCCGAGCGTATCT
CGTAGGGACATGGTCGACGACGGAGATGAGAAAAATGCTGATGACACTGC
TCCTGCAGAGAAGGTGTTCGAAAACGAGGTCGGAGACGTTACGGAGGCAT
TGGTCGAGAAGGGGGCGGGTAAGGAAGCGCCCACGAAGAGCGGCCTGGCG
GAAGAAGAGAGTCAAACCTTGAGGCAGGGCAAACATCCCGCCGTCACAGC
GTCTACTGCTGCCACTGTCCCTCCTGCCAGCATCCCTGCAGCTTCTGCCA
GCGCCGCAGATGTTGTTGACTCTGCTGCTGCAGCTGTTGCCGTCTCTGCC
TCTGCCCCTTGTGCCGTCCAACGAAAGAAGGTCCCTCGAGTTGATGGCAT
GACGGGCGAGATCCGGATCGGTCCCCATTTCGCTGTTGATGGCGATGTTG
GCGGAGCTAAAGAAGCGAAGGCCTCCTCCTCCCCGCCAACCCCAGCGGTA
GGGACAGGGACAGCGAGGAGGAACTCGGGAAAGGTTCGCGGCGGTAGTGG
CACAGGGTCGCTCGCTGACCTGCGGAGCGGAGACAGCAGCCGAGGCCGAA
GCCGCCGACGACGGAGGTGAGGTAACACCTTCTTGCTCTATGTGTGCTGA
CTTTTTAGTACTGGTGTCGTTCTGGTGTGGATCTTTCGTCCGAAAAAGAG
GCAGCTTTTCGAATGTTCGAAGAAATAAGATGCCAACCTCATGCCCCCCT
CCCCTCTCCCACTCTACTTGCGATCCTTCCGATCCTTCCACAGGCGTGGT
AAAGGGAAAAACAAGGGCAGGAGCAAAAGCAACAGCAGCGACAGCAGCAG
CAGCAGCATCAGCTGCTTTTCCGCAAACTCGAACGCCTCGAAGGACCGTG
CCAGGAAAAGGGGTGGTGGTGGTGGCGGCGGCGGCGGTCGGCGGCAGCAC
CGTCACCACAAGCCGCAGCGGAGGCGAAGACCTCGAGGGAGAGGTTCTAA
TGTCAACCGAACCCCGATCCCTGCGCCTCCTCAGGGGCGACCAACTAGCC
TGGAGCCGTTCCCGCCGGAAAAATCAAAAGCTTCTCGTAAAACGTTGGTG
TCATCGGCAATAACGATGTCGGCTCGGGCGGCAACCAGCGATTCCCACAG
TAGCGCCAGCCCCACCCGGCGGGAGCGGGAGCGGCCACTGCAACACCTTT
GTCGTCAAAATGGTCGGCGATTATTGACCTTGAAAAGCTCCTTGAATGAC
CATGACGACATGTCGATGGCGTCGTCGGACGCACATCCGTCTCTTCGTTC
CAATCTATCGTCTACTGTGGCGTCAAGATCGTTCGAAAAAGGAGACATCG
GCACCAGCAAGGGAATGGCTGGCGAGGGCGTCGAAGATGTCCATCCCTCG
AGTGAAGATGGCGGCGTGATTACGGCCAGTAAAAGCTCGAGGGAGGAGAG
CAACTGCTGGAGCGACGGCGTGTTTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1106:79772..85748+

>mRNA_A-nodosum_M_contig1106.3.1 ID=mRNA_A-nodosum_M_contig1106.3.1|Name=mRNA_A-nodosum_M_contig1106.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1545bp|location=Sequence derived from alignment at A-nodosum_M_contig1106:79772..85748+ (Ascophyllum nodosum dioecious)
GCGGTGATCGGTGCTCAGGAGGGGAGGCTACACGAGAGCGAAGTCCTCCT
TACGAGGTGCCTTGAGGCGCAGAAGACTATTCACGGCCCCGACCACCCAG
AAGTAGCGCTTGTCCTGGACCGGCTGGCTGAGGTCATCCGCGCCCAAGAT
GCGTTGTACACCGTGAGGGGGGCTGCCGACGCCCCCAACAACAACGCTGG
GTTGATGGAAAATGGGGACATGTCAATGACTTCGTGGTTGGATAGCAACC
TCACAAGCCGCGGCAGCAGCTGGTTTGATTCCGTCCCGAGCGTATCTCGT
AGGGACATGGTCGACGACGGAGATGAGAAAAATGCTGATGACACTGCTCC
TGCAGAGAAGGTGTTCGAAAACGAGGTCGGAGACGTTACGGAGGCATTGG
TCGAGAAGGGGGCGGGTAAGGAAGCGCCCACGAAGAGCGGCCTGGCGGAA
GAAGAGAGTCAAACCTTGAGGCAGGGCAAACATCCCGCCGTCACAGCGTC
TACTGCTGCCACTGTCCCTCCTGCCAGCATCCCTGCAGCTTCTGCCAGCG
CCGCAGATGTTGTTGACTCTGCTGCTGCAGCTGTTGCCGTCTCTGCCTCT
GCCCCTTGTGCCGTCCAACGAAAGAAGGTCCCTCGAGTTGATGGCATGAC
GGGCGAGATCCGGATCGGTCCCCATTTCGCTGTTGATGGCGATGTTGGCG
GAGCTAAAGAAGCGAAGGCCTCCTCCTCCCCGCCAACCCCAGCGGTAGGG
ACAGGGACAGCGAGGAGGAACTCGGGAAAGGTTCGCGGCGGTAGTGGCAC
AGGGTCGCTCGCTGACCTGCGGAGCGGAGACAGCAGCCGAGGCCGAAGCC
GCCGACGACGGAGGCGTGGTAAAGGGAAAAACAAGGGCAGGAGCAAAAGC
AACAGCAGCGACAGCAGCAGCAGCAGCATCAGCTGCTTTTCCGCAAACTC
GAACGCCTCGAAGGACCGTGCCAGGAAAAGGGGTGGTGGTGGTGGCGGCG
GCGGCGGTCGGCGGCAGCACCGTCACCACAAGCCGCAGCGGAGGCGAAGA
CCTCGAGGGAGAGGTTCTAATGTCAACCGAACCCCGATCCCTGCGCCTCC
TCAGGGGCGACCAACTAGCCTGGAGCCGTTCCCGCCGGAAAAATCAAAAG
CTTCTCGTAAAACGTTGGTGTCATCGGCAATAACGATGTCGGCTCGGGCG
GCAACCAGCGATTCCCACAGTAGCGCCAGCCCCACCCGGCGGGAGCGGGA
GCGGCCACTGCAACACCTTTGTCGTCAAAATGGTCGGCGATTATTGACCT
TGAAAAGCTCCTTGAATGACCATGACGACATGTCGATGGCGTCGTCGGAC
GCACATCCGTCTCTTCGTTCCAATCTATCGTCTACTGTGGCGTCAAGATC
GTTCGAAAAAGGAGACATCGGCACCAGCAAGGGAATGGCTGGCGAGGGCG
TCGAAGATGTCCATCCCTCGAGTGAAGATGGCGGCGTGATTACGGCCAGT
AAAAGCTCGAGGGAGGAGAGCAACTGCTGGAGCGACGGCGTGTTT
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