mRNA_A-nodosum_M_contig100.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig100.8.1
Unique NamemRNA_A-nodosum_M_contig100.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.620e-14
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  357 RVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGMSVTR 605
            ++PNT+ EAM  PQ   WK A  K++ +++KH V+ LVP++SVL G K++GT++V K K D  FK RLVV G  Q  G    R
Sbjct:  184 KIPNTYDEAMSSPQREEWKGACSKEMDNMRKHDVYNLVPLSSVLKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGR 266          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A6H5KD00_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD00_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.470e-13
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  357 RVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGMSVTR 605
            ++PNT+ EAM  PQ   W+ A  K++ +L+KH V+ LVP++SVL G K++GT+ V K K D  FK RLVV G  Q  G    R
Sbjct:  332 KIPNTYDEAMSSPQREEWEGACSKEMDNLRKHNVYNLVPLSSVLKGEKILGTKLVFKKKLDGRFKARLVVGGHRQEPGQDYGR 414          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A6H5KQ84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ84_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 7.450e-12
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  360 VPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGMSVTR 605
            +PNT+ EAM  PQ   WK A  K++ +L+KH V+ LVP++SVL G K++  ++V K K D  FK RLV  G  Q  G    R
Sbjct:  185 IPNTYDEAMSSPQHEEWKGACSKEMDNLRKHNVYNLVPLSSVLKGEKILAAKFVFKKKLDGRFKARLVAGGHRQEPGQDYGR 266          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A6H5JVR1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR1_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.080e-8
Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  288 VPAEVTYTRTITRPSCSGGGESDRVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGMSVTRD 608
            V A    T T ++   +   +  + P+T+ EAM  PQ  +WK+A D ++ +L KH VFK V I+ V     +  TR+V  +KAD +FK RLV  G  Q  G    R+
Sbjct:  847 VRAYAYATGTSSKGFLAEANQEIKTPSTYTEAMNSPQREQWKSAIDTEMGNLAKHKVFKKVRISLVPKDEDIFDTRFVFMIKADCSFKARLVAGGHRQRAGRHFGRN 953          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A4Q3EC79_9SPHI (Transposon Pol polyprotein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3EC79_9SPHI)

HSP 1 Score: 63.5 bits (153), Expect = 1.370e-7
Identity = 40/122 (32.79%), Postives = 64/122 (52.46%), Query Frame = 3
Query:  582 ILGMSVTRDLEKWTITISQKGDTEDVVQPYGMEDCNPAYNLGVGWNCP*TSRRINC*TWKKSGATR*SLEPYMYFAQLICYDILYAVNQLARAMPKPAKAHMGAAMHLPCYLVGFIGFSVTY 947
            ILG+ +TRD  K T++I Q+   E V++ +GMEDCNPA N  +  N   + +        +    R ++   ++ AQ+   DI+++V  L+R   +P  AH  A   +  YL G I   +TY
Sbjct:  175 ILGIQITRDRMKKTVSIDQRRYIETVLERFGMEDCNPA-NTPMDVNTKYSRKMSGNDEKNEIFPYREAIGSLLFAAQVTRPDIIFSVILLSRYCEEPKWAHWIATKRIMRYLKGTIDHKLTY 295          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A4S4LS10_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4LS10_9APHY)

HSP 1 Score: 63.2 bits (152), Expect = 1.370e-7
Identity = 43/136 (31.62%), Postives = 64/136 (47.06%), Query Frame = 3
Query:  573 VSQILGMSVTRDLEKWTITISQKGDTEDVVQPYGMEDCNPAYN-LGVGWNCP*TSRRINC*TWKKSGATR*SLE--PY-------MYFAQLICYDILYAVNQLARAMPKPAKAHMGAAMHLPCYLVGFIGFSVTYK 950
            ++Q+LG+ +TRD  K T+++SQ+  T D++  + M DC P    L  G        +++      + A R S++  PY       MY A     DI   V+ LAR    P  AH  A  HL  YL G +   +TY 
Sbjct:   60 INQLLGVQITRDRSKRTLSLSQRQYTLDILAKFNMADCRPVGTPLDPG-------AKLSTKMSPTTDAERASMKDIPYINAVGALMYLATATRPDIANTVSTLARFSSNPGMAHWNAVKHLMRYLQGTLDMKLTYS 188          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A4S4M1D7_9APHY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1D7_9APHY)

HSP 1 Score: 61.2 bits (147), Expect = 1.120e-6
Identity = 42/136 (30.88%), Postives = 63/136 (46.32%), Query Frame = 3
Query:  573 VSQILGMSVTRDLEKWTITISQKGDTEDVVQPYGMEDCNPAYN-LGVGWNCP*TSRRINC*TWKKSGATR*SLE--PY-------MYFAQLICYDILYAVNQLARAMPKPAKAHMGAAMHLPCYLVGFIGFSVTYK 950
            ++Q+LG+ +TRD  K T+++SQ+    D++  + M DC P    L  G        +++      + A R S++  PY       MY A     DI   V+ LAR    P  AH  A  HL  YL G +   +TY 
Sbjct:  896 INQLLGVQITRDRSKRTLSLSQRQYXXDILAKFXMADCRPVGTPLDPG-------AKLSTKMSPTTDAERASMKDIPYINAVGALMYLATATRPDIANTVSTLARFSSNPGMAHWNAVKHLMRYLQGTLDMKLTYS 1024          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: UPI00138F77A0 (Ty1/Copia family RNAse HI domain-containing protein n=2 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI00138F77A0)

HSP 1 Score: 59.3 bits (142), Expect = 4.180e-6
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 3
Query:  363 PNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGM 593
            P T++EA+  P + +W+ A + ++ S+  + V+ LV       G KV+  +W+ K+KAD TFKGRLV +G  Q  G+
Sbjct:  194 PATYREAIESPNSDKWRQAMESEMQSMYDNQVWNLVDAPQ---GAKVIECKWIFKLKADDTFKGRLVAKGFRQTHGV 267          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: L8GIM9_ACACA (Integrase core domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIM9_ACACA)

HSP 1 Score: 58.2 bits (139), Expect = 1.060e-5
Identity = 33/101 (32.67%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  348 ESDRVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVK--ADST---FKGR-------LVVQGVSQILGMSVTRDLE 614
            E+ + PN++K+A+  P AARW+ A  ++  +L ++G + LVP+   L G K +G RW+ KVK  AD +   +K R       + ++ +  +L  +  R+LE
Sbjct:  453 EAPKTPNSYKDALASPDAARWQKAMQEEFEALMRNGTYVLVPL---LQGRKPIGARWLYKVKLHADGSIDRYKARWHLLSCRIRIENLRLLLAFANARNLE 550          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: J9KJ72_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KJ72_ACYPI)

HSP 1 Score: 58.2 bits (139), Expect = 1.140e-5
Identity = 36/85 (42.35%), Postives = 46/85 (54.12%), Query Frame = 3
Query:  354 DRVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADST-----FKGRLVVQGVSQILGM 593
            D VP T+  A+    A  WK A   +I SLKK+  + L  +     G KVVGT+WV K+K DS      +K RLV QG SQ  G+
Sbjct:  768 DDVPKTYSSAVTGVHANLWKNAIQDEIDSLKKNNTWTLSHLPK---GRKVVGTKWVFKIKRDSIGSVKKYKARLVAQGFSQKEGV 849          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KTY2_9PHAE8.620e-1446.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KD00_9PHAE2.470e-1346.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQ84_9PHAE7.450e-1245.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVR1_9PHAE1.080e-836.45Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A4Q3EC79_9SPHI1.370e-732.79Transposon Pol polyprotein (Fragment) n=1 Tax=Sphi... [more]
A0A4S4LS10_9APHY1.370e-731.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4M1D7_9APHY1.120e-630.88Integrase catalytic domain-containing protein (Fra... [more]
UPI00138F77A04.180e-637.66Ty1/Copia family RNAse HI domain-containing protei... [more]
L8GIM9_ACACA1.060e-532.67Integrase core domain containing protein n=1 Tax=A... [more]
J9KJ72_ACYPI1.140e-542.35Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig100contigA-nodosum_M_contig100:127581..128532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1108849.XP_002567004.1
PFAMsDUF4219,RVT_2,Retrotran_gag_2,rve
Model size952
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.15e-09
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,20FR9@147545|Eurotiomycetes,3SBVI@5042|Eurotiales
DescriptionEncoded by
Cds size552
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866355.191059-UTR-A-nodosum_M_contig100:127580..1278041680866355.191059-UTR-A-nodosum_M_contig100:127580..127804Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig100 127581..127804 -
1680866355.215348-UTR-A-nodosum_M_contig100:128356..1285321680866355.215348-UTR-A-nodosum_M_contig100:128356..128532Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig100 128357..128532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866355.2051086-CDS-A-nodosum_M_contig100:127804..1283561680866355.2051086-CDS-A-nodosum_M_contig100:127804..128356Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig100 127805..128356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig100.8.1prot_A-nodosum_M_contig100.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig100 127805..128356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig100.8.1

>prot_A-nodosum_M_contig100.8.1 ID=prot_A-nodosum_M_contig100.8.1|Name=mRNA_A-nodosum_M_contig100.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=184bp
MALAERFQPSTLHKLRQLGIYTITYTPDTAHQLDAEAVPAEVTYTRTITR
PSCSGGGESDRVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPI
TSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGMSVTRDLEKWTI
TISQKGDTEDVVQPYGMEDCNPAYNLGVGWNCP*
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mRNA from alignment at A-nodosum_M_contig100:127581..128532-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig100.8.1 ID=mRNA_A-nodosum_M_contig100.8.1|Name=mRNA_A-nodosum_M_contig100.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=952bp|location=Sequence derived from alignment at A-nodosum_M_contig100:127581..128532- (Ascophyllum nodosum dioecious)
GTTACAGGGAAGTACGCCCAAACAAAAACAACAACGACGACGACAACATC AACAACAACATCCACGCGACTCTGGCAAAACGTTTCCAGCTGAGTACGCT GCACAAGCTGCGACAACTAGGTTTTTACGCCAACACGGACACGCCGGACG ACAACAACGTCAACAACAACAACCACATGGCTCTTGCGGAACGTTTCCAG CCGAGTACGCTGCACAAGCTGCGACAACTAGGTATCTACACCATTACGTA CACGCCGGATACTGCGCATCAGCTTGATGCCGAGGCGGTTCCTGCTGAAG TCACCTACACCAGGACCATTACGCGGCCGAGCTGTTCGGGAGGGGGAGAA TCGGATCGTGTTCCAAACACCTTCAAGGAGGCTATGGGCCTGCCCCAGGC GGCGCGTTGGAAGACCGCATCAGACAAGAAGATTGCGAGTCTGAAGAAGC ACGGCGTCTTTAAACTGGTACCGATTACGTCAGTCCTTGCGGGACACAAA GTTGTTGGTACCAGGTGGGTGGGGAAAGTTAAGGCAGACAGTACCTTTAA GGGTCGACTCGTCGTGCAAGGAGTTTCGCAGATCCTCGGCATGAGCGTCA CCCGCGATCTTGAAAAATGGACCATCACCATCAGCCAGAAAGGCGATACG GAGGACGTGGTACAGCCCTATGGTATGGAAGACTGCAACCCCGCGTACAA CCTCGGAGTAGGCTGGAACTGTCCCTGAACCAGCCGGAGGATAAATTGCT GAACATGGAAGAAAAGCGGTGCTACCAGGTAATCACTGGAGCCGTACATG TATTTCGCACAGCTCATCTGTTACGACATTCTCTACGCGGTCAATCAGCT GGCGAGGGCCATGCCCAAGCCCGCGAAAGCTCATATGGGGGCGGCGATGC ACCTGCCTTGCTACTTGGTCGGGTTTATAGGCTTCTCCGTCACCTACAAG CA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig100:127581..128532-

>mRNA_A-nodosum_M_contig100.8.1 ID=mRNA_A-nodosum_M_contig100.8.1|Name=mRNA_A-nodosum_M_contig100.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at A-nodosum_M_contig100:127581..128532- (Ascophyllum nodosum dioecious)
ATGGCTCTTGCGGAACGTTTCCAGCCGAGTACGCTGCACAAGCTGCGACA
ACTAGGTATCTACACCATTACGTACACGCCGGATACTGCGCATCAGCTTG
ATGCCGAGGCGGTTCCTGCTGAAGTCACCTACACCAGGACCATTACGCGG
CCGAGCTGTTCGGGAGGGGGAGAATCGGATCGTGTTCCAAACACCTTCAA
GGAGGCTATGGGCCTGCCCCAGGCGGCGCGTTGGAAGACCGCATCAGACA
AGAAGATTGCGAGTCTGAAGAAGCACGGCGTCTTTAAACTGGTACCGATT
ACGTCAGTCCTTGCGGGACACAAAGTTGTTGGTACCAGGTGGGTGGGGAA
AGTTAAGGCAGACAGTACCTTTAAGGGTCGACTCGTCGTGCAAGGAGTTT
CGCAGATCCTCGGCATGAGCGTCACCCGCGATCTTGAAAAATGGACCATC
ACCATCAGCCAGAAAGGCGATACGGAGGACGTGGTACAGCCCTATGGTAT
GGAAGACTGCAACCCCGCGTACAACCTCGGAGTAGGCTGGAACTGTCCCT
GA
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