prot_A-nodosum_M_contig1097.18.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1097.18.1
Unique Nameprot_A-nodosum_M_contig1097.18.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length125
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.18.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 2.050e-68
Identity = 110/124 (88.71%), Postives = 117/124 (94.35%), Query Frame = 0 
Query:    1 MTGKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVANK 124
            M+GKGKGGRG  KK+T+RS+KAGLQFPVGR+GRFLK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK   K
Sbjct:    1 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.18.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 6.940e-67
Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 0 
Query:    1 MTGKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            M+GKGKGGRG  KK+T+RS+KAGLQFPVGR+GRFLK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:   46 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 163
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.18.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 1.490e-66
Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 0 
Query:    1 MTGKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            M+GKGKGGRG  KK+TS+SSKAGLQFPV RIGR+LK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.18.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 7.610e-66
Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 0 
Query:    1 MTGKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            M+GKGKGGRG  KK+TS+SSKAGLQFPV RIGR+LK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:   52 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.18.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 1.460e-65
Identity = 105/120 (87.50%), Postives = 113/120 (94.17%), Query Frame = 0 
Query:    1 MTGKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            M+GKGKGGRG  KK TSRS+KAGLQFPVGRIGRF+K GKYS RVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRH+QLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG--KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.18.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA)

HSP 1 Score: 202 bits (515), Expect = 2.880e-65
Identity = 104/124 (83.87%), Postives = 116/124 (93.55%), Query Frame = 0 
Query:    1 MTGKGKGGRG-DKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVAN 123
            M GKGKGGRG + KK+TS+SSKAGLQFPV R+GRFLK G+Y++RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+QLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK A+
Sbjct:    1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTAS 124
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.18.1 vs. uniprot
Match: B7FZS7_PHATC (Histone H2A n=2 Tax=Naviculales TaxID=38748 RepID=B7FZS7_PHATC)

HSP 1 Score: 200 bits (508), Expect = 4.500e-64
Identity = 100/118 (84.75%), Postives = 112/118 (94.92%), Query Frame = 0 
Query:    3 GKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            GKGKGGRGDKK+TTS SSKAGLQFPVGRIGR+L+ GKY+ R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+ LAV+NDEELNKLLG VTIA+GGVLPNIHA+LLPKK
Sbjct:   10 GKGKGGRGDKKQTTSSSSKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGNVTIAAGGVLPNIHAILLPKK 127
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.18.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.950e-63
Identity = 101/122 (82.79%), Postives = 115/122 (94.26%), Query Frame = 0 
Query:    3 GKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVANK 124
            GKGKGGRGDKK   S+S+KAGLQFPVGR+GRFLK G+Y++RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RIIPRH+QLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK  +K
Sbjct:    5 GKGKGGRGDKK-AVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.18.1 vs. uniprot
Match: A0A835ZBB6_9STRA (Histone H2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB6_9STRA)

HSP 1 Score: 197 bits (500), Expect = 6.130e-63
Identity = 102/125 (81.60%), Postives = 114/125 (91.20%), Query Frame = 0 
Query:    1 MTGKGKGGRG-DKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVANK 124
            M GKGKGGRG + KK TS+S+KAGLQFPV R+GR+LK G+Y+ RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+QLAVRNDEELN+LLG VTIASGGVLPNIHAVLLPKK A K
Sbjct:    1 MAGKGKGGRGAEGKKITSQSAKAGLQFPVARMGRYLKQGRYADRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNRLLGNVTIASGGVLPNIHAVLLPKKTAAK 125
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.18.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 196 bits (498), Expect = 8.950e-63
Identity = 102/122 (83.61%), Postives = 113/122 (92.62%), Query Frame = 0 
Query:    1 MTGKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVA 122
            M+GKGKGGRG KK TTS S+KAGLQFPVGRIGR+L+ GKY+ R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+ LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK A
Sbjct:    1 MSGKGKGGRGGKKSTTS-SAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSA 121
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1097.18.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI9_ECTSI2.050e-6888.71Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
D7G193_ECTSI6.940e-6790.83Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KG79_9PHAE1.490e-6690.83Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FVQ5_ECTSI7.610e-6690.83Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D8LLP0_ECTSI1.460e-6587.50Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A836CG77_9STRA2.880e-6583.87Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
B7FZS7_PHATC4.500e-6484.75Histone H2A n=2 Tax=Naviculales TaxID=38748 RepID=... [more]
A0A835ZLE9_9STRA1.950e-6382.79Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A835ZBB6_9STRA6.130e-6381.60Histone H2A n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A6U2JFS4_9STRA8.950e-6383.61Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 58..71
score: 90.54
coord: 43..58
score: 90.36
coord: 14..36
score: 70.43
coord: 100..118
score: 76.04
coord: 72..86
score: 76.51
IPR002119Histone H2ASMARTSM00414h2a4coord: 3..123
e-value: 2.5E-80
score: 282.9
IPR002119Histone H2APANTHERPTHR23430HISTONE H2Acoord: 3..122
IPR002119Histone H2ACDDcd00074H2Acoord: 16..120
e-value: 1.71408E-68
score: 199.869
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 92..123
e-value: 1.2E-18
score: 66.6
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 11..89
e-value: 2.2E-15
score: 57.2
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 1..124
e-value: 5.2E-65
score: 219.1
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 4..122
NoneNo IPR availablePIRSRPIRSR037942-1PIRSR037942-1coord: 8..122
e-value: 2.0E-53
score: 179.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availablePANTHERPTHR23430:SF286HISTONE H2A.6coord: 3..122
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 22..28

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1097contigA-nodosum_M_contig1097:218468..218842 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1097.18.1mRNA_A-nodosum_M_contig1097.18.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1097 218468..218842 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1097.18.1 ID=prot_A-nodosum_M_contig1097.18.1|Name=mRNA_A-nodosum_M_contig1097.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=125bp
MTGKGKGGRGDKKKTTSRSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPV
YLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGE
VTIASGGVLPNIHAVLLPKKVANK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR032454Histone_H2A_C
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
IPR032458Histone_H2A_CS