mRNA_A-nodosum_M_contig10801.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A484LZS7_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LZS7_9ASTE) HSP 1 Score: 65.1 bits (157), Expect = 5.120e-11 Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 1
Query: 1 KEVDWSHLKIIGAKAFVHI-QDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
KEV + HL++ G +AFVHI +D R KL+ K+ E I G+SEDE YR+W+P+ R+V+ SR+V F E
Sbjct: 58 KEVSYKHLRVFGCRAFVHIPRDERSKLDKKTKECIFLGYSEDE-FGYRLWDPRDRKVIRSRDVVFYE 123
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A0D3AGD1_BRAOL (Uncharacterized protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3AGD1_BRAOL) HSP 1 Score: 62.0 bits (149), Expect = 5.920e-11 Identity = 32/67 (47.76%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 1 KEVDWSHLKIIGAKAFVHI-QDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
K+V +SHL++ G KAFVHI +D R KLE+KS + + +G+ +DE YR ++P R++V SR+V F+E
Sbjct: 23 KDVSYSHLRVFGCKAFVHIPKDERSKLEMKSRQCVFFGYGQDE-FGYRFYDPVERKLVRSRDVVFME 88
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 7.120e-11 Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 1 KEVDWSHLKIIGAKAFVHIQDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
K+ HL++IG+ AFVH++ + KL ++W IL G+S D YRV+NP+++R+V SRNVTFIE
Sbjct: 206 KQASLRHLRVIGSTAFVHLETYKSKLANRAWPGILIGYSPDSRA-YRVFNPRTKRIVHSRNVTFIE 270
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A484LYF8_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LYF8_9ASTE) HSP 1 Score: 64.3 bits (155), Expect = 8.390e-11 Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 1
Query: 1 KEVDWSHLKIIGAKAFVHI-QDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
K+V + HL++ G +AFVHI +D R KL+ K+ E I G+SEDE YR+W+P+ R+V+ SR+V F E
Sbjct: 58 KDVSYKHLRVFGCRAFVHIHRDERSKLDKKTKECIFLGYSEDE-FGYRLWDPRDRKVIRSRDVVFFE 123
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A484L1C1_9ASTE (gag_pre-integrs domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484L1C1_9ASTE) HSP 1 Score: 63.5 bits (153), Expect = 3.410e-10 Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 1
Query: 1 KEVDWSHLKIIGAKAFVHI-QDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
K+V + HL++ G +AFVHI +D R KL+ K+ E I G+SEDE YR+W+P+ R+V+ SR+V F E
Sbjct: 507 KDVSYKHLRVFGFRAFVHIPRDERSKLDKKTKECIFLGYSEDE-FGYRLWDPRDRKVIRSRDVVFFE 572
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 6.430e-10 Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 1
Query: 1 KEVDWSHLKIIGAKAFVHIQDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
K+ HL++IG+ AFVH++ + KL ++W IL G+S + YR++NP ++R+V SRNVTFIE
Sbjct: 688 KQASLRHLRVIGSSAFVHVETYKSKLANRAWPGILVGYSPNSNA-YRIYNPHTKRIVPSRNVTFIE 752
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 8.770e-10 Identity = 30/66 (45.45%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 1 KEVDWSHLKIIGAKAFVHIQD-ARKLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
K+ + S L+IIG++AFVHI+ KL+ K+WE +L G+++D F R++N + R+ +RNVTFIE
Sbjct: 458 KQANLSFLRIIGSRAFVHIEGHTTKLQAKAWEGVLVGYNDDSPTF-RIYNRTTGRITSTRNVTFIE 522
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A6D2HWF4_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HWF4_9BRAS) HSP 1 Score: 61.6 bits (148), Expect = 1.610e-9 Identity = 32/67 (47.76%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 1 KEVDWSHLKIIGAKAFVHI-QDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
++V+++HLK+ G +AFVHI +D R KL+ K+ E I G S DE YR+W+PK+R+++ SR+V F E
Sbjct: 71 RKVNYNHLKVFGCRAFVHIPKDERAKLDSKTKECIYLGSSRDE-FGYRLWDPKNRKIIRSRDVVFFE 136
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A5N5KU00_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5KU00_9ROSI) HSP 1 Score: 60.1 bits (144), Expect = 4.550e-9 Identity = 30/67 (44.78%), Postives = 48/67 (71.64%), Query Frame = 1
Query: 1 KEVDWSHLKIIGAKAFVHI-QDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
K+V ++HL++ G +AFVH+ +D R KL+ K+ + I G SED+ YR+W+PK +++V SR+V F E
Sbjct: 22 KDVSYAHLRVFGCRAFVHVPRDERSKLDSKTKQCIFLG-SEDDEFGYRLWDPKEKKIVRSRDVIFFE 87
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Match: A0A5N5MC61_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5MC61_9ROSI) HSP 1 Score: 60.1 bits (144), Expect = 5.700e-9 Identity = 30/67 (44.78%), Postives = 48/67 (71.64%), Query Frame = 1
Query: 1 KEVDWSHLKIIGAKAFVHI-QDAR-KLELKSWERILYGFSEDEALFYRVWNPKSRRVVDSRNVTFIE 195
K+V ++HL++ G +AFVH+ +D R KL+ K+ + I G SED+ YR+W+PK +++V SR+V F E
Sbjct: 521 KDVSYTHLRVFGCRAFVHVPRDERSKLDSKTKQCIFLG-SEDDEFGYRLWDPKEKKIVRSRDVIFFE 586 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10801.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10801.1.1 >prot_A-nodosum_M_contig10801.1.1 ID=prot_A-nodosum_M_contig10801.1.1|Name=mRNA_A-nodosum_M_contig10801.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=65bp KEVDWSHLKIIGAKAFVHIQDARKLELKSWERILYGFSEDEALFYRVWNPback to top mRNA from alignment at A-nodosum_M_contig10801:10224..10418- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10801.1.1 ID=mRNA_A-nodosum_M_contig10801.1.1|Name=mRNA_A-nodosum_M_contig10801.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at A-nodosum_M_contig10801:10224..10418- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10801:10224..10418- >mRNA_A-nodosum_M_contig10801.1.1 ID=mRNA_A-nodosum_M_contig10801.1.1|Name=mRNA_A-nodosum_M_contig10801.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=195bp|location=Sequence derived from alignment at A-nodosum_M_contig10801:10224..10418- (Ascophyllum nodosum dioecious)back to top |