mRNA_A-nodosum_M_contig1067.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1067.1.1
Unique NamemRNA_A-nodosum_M_contig1067.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1067.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1067contigA-nodosum_M_contig1067:69944..70911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3X5
PFAMsAMOP,SRCR,VWD,WSC
Model size180
Max annot lvl2759|Eukaryota
KEGG koko:K22017
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.17e-05
EggNOG OGsKOG4291@1|root,KOG4291@2759|Eukaryota
DescriptionSushi, nidogen and EGF-like
Cds size180
COG categoryKLT
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866454.409277-CDS-A-nodosum_M_contig1067:69943..700591680866454.409277-CDS-A-nodosum_M_contig1067:69943..70059Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1067 69944..70059 -
1680866454.4237607-CDS-A-nodosum_M_contig1067:70847..709111680866454.4237607-CDS-A-nodosum_M_contig1067:70847..70911Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1067 70848..70911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1067.1.1prot_A-nodosum_M_contig1067.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1067 69944..70911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1067.1.1

>prot_A-nodosum_M_contig1067.1.1 ID=prot_A-nodosum_M_contig1067.1.1|Name=mRNA_A-nodosum_M_contig1067.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=60bp
GRITSAGELCSDTETAPCIIDEVCGPALTITLEWEETDSDLDLMVTEPDG
SVVSFALMVG
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mRNA from alignment at A-nodosum_M_contig1067:69944..70911-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1067.1.1 ID=mRNA_A-nodosum_M_contig1067.1.1|Name=mRNA_A-nodosum_M_contig1067.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=968bp|location=Sequence derived from alignment at A-nodosum_M_contig1067:69944..70911- (Ascophyllum nodosum dioecious)
GGGCGCATTACATCCGCGGGCGAGCTCTGTAGTGACACCGAGACGGCCCC
CTGCATCATTGACGGTGTGTGCTATGCTCATAGCTTGACGTCGTCCATCC
CGCGACAGACACTTCTTATGTCTTGCCCCGATGTGCGACTGCGCGCGGCG
AACGATCTGCATTTCTGTTTACGACGCGTTGCAATCGAGCTTGCGGATCT
GAGCGCCGTACGGTCGCTGTTCAACTCTCAATTGAAGAACTCCATTTGTG
GCGGCTGTTGAATGTACGCGTGTCGCGGCAGAACTCAACATAGAGCCCTG
CCAGGGCGGACGTAACGCCAGGCAGTGTCGTTGCCAACAATTGATTCGTT
GAGATACGTTTTTTCTTCTTTAAATCAGAATAACCACTCTGACTAACAGT
TTGACAAACGGACGAGGCGACCCTTGCACGAACTGCACAACTAATCACGA
ACGACGTTTATCTATCCAGAGAGATACGAGTACCAGTCACTATACTGGCA
CAATCCAATGCCTGTCGCGAGAATTTCGTGAAGTCTTCCGGTACAGGATC
GACCCTTGATGACAGAGCAGTGAACGATTCGCATTCAGATTTTCTTTCTC
CCGTTACCGCTGTTACTCGTAGTTCCACCAAATATCACTTGCAGCAATGG
TATCCTCGGCGTCGAAGCTAACGCCGTATACTGTGTGGCTGAGGGCAAGA
CATGCAGCGTCGCGACCGTTACATAGCCCACCTTAGTTTATCTCAACAAA
GTTATCGGAGGCAAGTTGCAAAGTACGTGCACCATATGGAGTACACGATG
CAAATCATCTCACTTTTTGTCACCCCGATGCCGTTCGTCTGTGGCTTAGC
AGAAGTATGCGGGCCTGCGCTCACCATCACCTTGGAATGGGAAGAGACCG
ACAGCGATCTCGATCTAATGGTGACAGAGCCCGATGGCTCGGTTGTCAGT
TTTGCGCTCATGGTGGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1067:69944..70911-

>mRNA_A-nodosum_M_contig1067.1.1 ID=mRNA_A-nodosum_M_contig1067.1.1|Name=mRNA_A-nodosum_M_contig1067.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=180bp|location=Sequence derived from alignment at A-nodosum_M_contig1067:69944..70911- (Ascophyllum nodosum dioecious)
GGGCGCATTACATCCGCGGGCGAGCTCTGTAGTGACACCGAGACGGCCCC
CTGCATCATTGACGAAGTATGCGGGCCTGCGCTCACCATCACCTTGGAAT
GGGAAGAGACCGACAGCGATCTCGATCTAATGGTGACAGAGCCCGATGGC
TCGGTTGTCAGTTTTGCGCTCATGGTGGGG
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