mRNA_A-nodosum_M_contig1056.3.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1056.3.1 vs. uniprot
Match: A0A6H5L6G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6G9_9PHAE) HSP 1 Score: 340 bits (872), Expect = 9.220e-91 Identity = 260/604 (43.05%), Postives = 325/604 (53.81%), Query Frame = 2
Query: 3485 AKQKRSVARVRVRVRSSVYVLVAYLDERGSLLLNEVVEAEKHRHGARAARVVGLTNESTGNPVDLNVPARRSLSSGDALVAVVATMTSD-------------GRGEVGFVASAESVLGKAPGKVGKEDRPEVMSREHAQPVGDKPTRQRPKTSGDTPNSSRILAEDTKRGGGRSPQQRSTKPKPSRCIASPRDIDQLRDDVARRFFTERQAAGEGVGALRSPFRLHDLPPTSPVTGKGRGASPENSRVTSPRSASPRGALKWPERST------EGGGEGKEESRPASXXXXXXXXXXXYTNFSCFSLRS--HGR----AARSEKAFLAQSTLTPKELGIILKEELVKSHKWSARHRTAQEKVRRVWEERGLDHDRRQRAYEKKEAERRKEIXXXXXVEAQRMAARNRRLAELAESARQHARDSRNTKESRAKEAEAVHQKRLLMISEQKDR------------------------------EKREHARKVHMMGRRREDVRDSFLDLVDNEKETAIQALETPLEILERAVGEGDNKLEKKARRAILRRQAKERVSLRQKXXXXLAEXRRRESVVEESSHTREAVESRMRPGPGQYNIRDFSEFG 5131
A Q VARVRV VRSSVY++VA +++ GS+LL++V EAEK RHG AA V GL NESTG+ VDL +PA RS+SSGD+L+A+VA + G G G A S G+ P R+H + G + G P+ R+ D + GG DID+LRDDVARR + ER AG G A SP R P +P+TG GRGASPE+SR TSPRSA GA P RS+ +GGG G SRP S YT+ S FS+RS HGR A SE AF+AQSTLTP+EL ILKEEL+KS KWSAR+R AQ+K+ RVWEERG D++R QR +E+ EA R+++ + A H++R+ I++++DR E+R HA KV M RRREDVRDSFLD+VD E ETAIQALETPLE+L RA+ EGD EKKARRA+LR+ A+ERV +R+K LA+ RR E + VES M PGPGQYN+RDFSE+G
Sbjct: 1488 APQGPEVARVRVSVRSSVYLIVAEVEKDGSILLDQVSEAEKLRHGQNAATVTGLMNESTGDTVDLELPAERSISSGDSLIAIVAGWSPTTSPGARIKQSRRRGAGGEGESGGATSARGRTP------------QRQHHRHDGSR------SREGSRPSLLRLELNDNEGRGG--------------------DIDELRDDVARRLYKERLVAGRGAAAASSPTRPIGSPAITPITGGGRGASPEHSRPTSPRSAXXXGATNRPGRSSPRGSVRDGGGRG---SRPGSPARSVCSAASGYTHCSGFSVRSRGHGRGKGAAGNSEAAFMAQSTLTPEELDGILKEELLKSRKWSARNRNAQDKICRVWEERGADYNRLQREFEEAEAIRQEKARQRREMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAHRRRMQQITDRRDRGDALGNSCGRVFVEPEPGSYASPSTFSPAAEQRIHATKVQAMDRRREDVRDSFLDMVDAENETAIQALETPLEMLNRALEEGDEVSEKKARRAMLRQAARERVHVREKAARVLADQRRLEQ-----KNAGRLVESSMMPGPGQYNLRDFSEYG 2045
BLAST of mRNA_A-nodosum_M_contig1056.3.1 vs. uniprot
Match: D7G0H5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H5_ECTSI) HSP 1 Score: 334 bits (857), Expect = 5.090e-89 Identity = 251/543 (46.22%), Postives = 309/543 (56.91%), Query Frame = 2
Query: 3482 DAKQKRSVARVRVRVRSSVYVLVAYLDERGSLLLNEVVEAEKHRHGARAARVVGLTNESTGNPVDLNVPARRSLSSGDALVAVV---ATMTSD-----------GRGEVGFVASAESVLGKAPGKVGKEDRPEVMSREHAQPVGDKPTRQRPKTSGDTPNSSRILAEDTKRGGGRSPQQRSTKPKPSRCIASPRDIDQLRDDVARRFFTERQAAGEGVGALRSPFRLHDLPPTSPVTGKGRGASPENSRVTSPRSASPRGALKWPERST------EGGGEGKEESRPASXXXXXXXXXXXYTNFSCFSLRSHG------RAARSEKAFLAQSTLTPKELGIILKEELVKSHKWSARHRTAQEKVRRVWEERGLDHDRRQRAYEKKEAERRKEIXXXXXVEAQRMAARNRRLAELAESARQHARDSRNTKESRAKEAEAVHQKRLLMISEQKDREKREHARKVHMMGRRREDVRDSFLDLVDNEKETAIQALETPLEILERAVGEGDNKLEKKARRAILRRQAKERVSLRQKXXXXLAEXRRRE 5032
+A Q VARVRV VRSSVY++VA +++ GS+LL++V EAEK RHG AA V GLTNESTG+ VDL+VPA RS+SSGD+L A+V + TS G G G A S G+AP R+H + G +R+ G P+ R+ D + GG DIDQLRDDVARR + ER AG G A SP R P +PVTG GRGASPE+SR TSPRSASPRGA K P RS+ +GGG G SRP S YT+ S FS+RS G A SE AF+AQSTLTP+EL ILKEEL+KS KWSAR+R AQ+K+ RVWEERG D++R QR +E+ EA R+ + E +R+ I++++DRE+R HA KV M RRREDVRDSFLD+VD E ETAIQALETPLE+L RA+ EGD EKKARRA+LR+ A+ERV +R+K LA+ RR E
Sbjct: 1448 EASQGPEVARVRVSVRSSVYLIVAEVEKAGSMLLDQVSEAEKLRHGQNAATVTGLTNESTGDTVDLDVPAERSISSGDSLTAIVVGWSPTTSPPGARTKQSRRLGAGGEGESGGATSARGRAP------------QRQHHRHDGSPRSRE-----GSRPSPLRLEFNDNEGRGG--------------------DIDQLRDDVARRLYKERLLAGRGAAAASSPTRPIGSPAITPVTGGGRGASPEHSRPTSPRSASPRGATKGPGRSSPRGSVRDGGGGG---SRPGSPTRSVCSAASGYTHCSGFSVRSRGPGRGKGAAGNSEAAFMAQSTLTPEELDGILKEELLKSRKWSARNRNAQDKICRVWEERGADYNRLQREFEEAEAIRQDKARQRRETEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRMQQITDRRDREQRMHATKVQAMDRRREDVRDSFLDMVDAENETAIQALETPLEMLNRALEEGDEISEKKARRAMLRQAARERVHVREKAARVLADQRRLE 1950 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1056.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1056.3.1 >prot_A-nodosum_M_contig1056.3.1 ID=prot_A-nodosum_M_contig1056.3.1|Name=mRNA_A-nodosum_M_contig1056.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1718bp MQLLFCNAPMIAGTLNYSSVAVLHKILKITVENKRWAALGGLGTRRPYQRback to top mRNA from alignment at A-nodosum_M_contig1056:34063..45318+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1056.3.1 ID=mRNA_A-nodosum_M_contig1056.3.1|Name=mRNA_A-nodosum_M_contig1056.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=11256bp|location=Sequence derived from alignment at A-nodosum_M_contig1056:34063..45318+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1056:34063..45318+ >mRNA_A-nodosum_M_contig1056.3.1 ID=mRNA_A-nodosum_M_contig1056.3.1|Name=mRNA_A-nodosum_M_contig1056.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=5154bp|location=Sequence derived from alignment at A-nodosum_M_contig1056:34063..45318+ (Ascophyllum nodosum dioecious)back to top |