mRNA_A-nodosum_M_contig10484.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10484.1.1
Unique NamemRNA_A-nodosum_M_contig10484.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10484.1.1 vs. uniprot
Match: D7FIN3_ECTSI (Microsomal Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN3_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 3.860e-35
Identity = 54/84 (64.29%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:   58 FNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRLF 309
            FNCYQRAHQN+LENYP FL+LL LA+++RPTIA +AGA+RL GFV+Y +GY+TGDP+KR RG FGYIG L +L  ++E  V+++
Sbjct:   57 FNCYQRAHQNVLENYPSFLLLLGLAAINRPTIAGVAGAVRLAGFVAYVIGYRTGDPEKRHRGAFGYIGLLTMLGCAIESVVKVY 140
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BLAST of mRNA_A-nodosum_M_contig10484.1.1 vs. uniprot
Match: A0A6H5KF61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF61_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.640e-33
Identity = 52/86 (60.47%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:   58 FNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRLFVS 315
            FNCYQRAHQN+LENYP FL+LL LA+++RP +A +AGAIRL GFV+Y +GY+TG+P+KR +G FGYIG + +L  ++E AV++ +S
Sbjct:   57 FNCYQRAHQNVLENYPSFLLLLGLAAINRPIVAGVAGAIRLAGFVAYVIGYRTGNPEKRHKGAFGYIGLITMLGCAIESAVKIGMS 142
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BLAST of mRNA_A-nodosum_M_contig10484.1.1 vs. uniprot
Match: D7FIN2_ECTSI (Microsomal Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN2_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.420e-30
Identity = 51/91 (56.04%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:   43 PRRQAFNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRLFVS 315
            P    FNCYQRAHQN+LENYPQFL+LL LA+++RP  AA+AGAIR+ GF+ Y + Y++G PD R +G FGYIG   +L  +LE   +L +S
Sbjct:   52 PNAAVFNCYQRAHQNVLENYPQFLLLLGLAAINRPKFAAVAGAIRVAGFIVYVITYRSGGPDNRRKGAFGYIGLFMMLGCALEFTTKLCIS 142
[Close]
BLAST of mRNA_A-nodosum_M_contig10484.1.1 vs. uniprot
Match: H3GBW9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GBW9_PHYRM)

HSP 1 Score: 114 bits (284), Expect = 3.300e-30
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:   55 AFNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRL 306
            AFNC QRAHQN+LEN P F  +LA +S++RPTIAA+AG +R+ GFV Y  GY +GDP KR +G FGY+G L +L LSLE A+RL
Sbjct:   60 AFNCVQRAHQNVLENLPLFYAMLATSSIYRPTIAAVAGVVRIAGFVMYVKGYSSGDPGKRRQGNFGYLGTLVMLGLSLEAALRL 143
[Close]
BLAST of mRNA_A-nodosum_M_contig10484.1.1 vs. uniprot
Match: A0A8J2PRK1_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2PRK1_9HEXA)

HSP 1 Score: 112 bits (281), Expect = 7.070e-30
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:   58 FNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRL 306
            FNCYQRAHQN LENYPQFL+LL LA +  P ++A+AG + + G V Y LGYQTGDP KR RG F YIG L L +L+++L++RL
Sbjct:   54 FNCYQRAHQNTLENYPQFLLLLLLAGIEMPCVSALAGLVWIAGRVVYGLGYQTGDPQKRARGAFAYIGLLTLFLLTVKLSLRL 136
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BLAST of mRNA_A-nodosum_M_contig10484.1.1 vs. uniprot
Match: A0A1V9Y7C0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7C0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.460e-29
Identity = 53/87 (60.92%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:   55 AFNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRLFVS 315
            AFNC QRAHQN+LEN P F  LLA +S+ RP  AAIAG IR+ GF++Y  GY TGDP KR  G FGY+G  A + LS+E AVRL  S
Sbjct:   57 AFNCVQRAHQNMLENLPVFFTLLATSSIFRPGYAAIAGGIRVAGFIAYVQGYATGDPTKRMNGAFGYLGLFAAIGLSIEAAVRLITS 143
[Close]
BLAST of mRNA_A-nodosum_M_contig10484.1.1 vs. uniprot
Match: A0A8J2P540_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2P540_9HEXA)

HSP 1 Score: 112 bits (281), Expect = 2.600e-29
Identity = 51/83 (61.45%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:   58 FNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRL 306
            FNCYQRAHQN LENYPQFL+LL LA +  P ++++AG I ++G V YALGYQTGDP KR RG F Y+  LALL ++++L++RL
Sbjct:  101 FNCYQRAHQNTLENYPQFLLLLLLAGIEMPWVSSLAGLIWIVGRVVYALGYQTGDPKKRIRGAFAYLALLALLFVTIKLSLRL 183
[Close]
BLAST of mRNA_A-nodosum_M_contig10484.1.1 vs. uniprot
Match: A0A8J2PGC8_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2PGC8_9HEXA)

HSP 1 Score: 110 bits (276), Expect = 4.060e-29
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:   58 FNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRL 306
            FNCYQRAHQN LENYPQFLVLL LA +  P ++A+AG + + G V YALGYQTG+P KR RG F  +G L LL+++++LA+RL
Sbjct:   54 FNCYQRAHQNTLENYPQFLVLLLLAGIEMPCVSALAGLVFIAGRVVYALGYQTGEPIKRARGNFAMMGMLVLLLINMKLALRL 136
[Close]
BLAST of mRNA_A-nodosum_M_contig10484.1.1 vs. uniprot
Match: A0A225WXS0_9STRA (Microsomal Glutathione S-transferase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WXS0_9STRA)

HSP 1 Score: 110 bits (276), Expect = 5.380e-29
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:   58 FNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRL 306
            FNC QRAHQN+LE+ P F  +LA +S++RPTIAA AG +RL GFV Y  GY +GDP KR +G FGY+G L +L LSLE A+RL
Sbjct:   61 FNCVQRAHQNVLEHLPLFYAMLATSSIYRPTIAAAAGVVRLAGFVMYVKGYSSGDPGKRRKGNFGYLGMLVMLGLSLEAALRL 143
[Close]
BLAST of mRNA_A-nodosum_M_contig10484.1.1 vs. uniprot
Match: A0A8J2KTW7_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2KTW7_9HEXA)

HSP 1 Score: 113 bits (283), Expect = 1.030e-28
Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:   52 QAFNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRL 306
            + FNCYQRAHQN LENYPQFL+LL LA +  P ++A+AG + + G V YALGYQTGDP KR +G F Y+G L LL+++++L++RL
Sbjct:   52 EVFNCYQRAHQNTLENYPQFLLLLLLAGIEMPCVSALAGLVWIAGRVVYALGYQTGDPKKRVQGAFAYLGLLTLLLITIKLSLRL 136
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10484.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIN3_ECTSI3.860e-3564.29Microsomal Glutathione S-transferase n=1 Tax=Ectoc... [more]
A0A6H5KF61_9PHAE2.640e-3360.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIN2_ECTSI1.420e-3056.04Microsomal Glutathione S-transferase n=1 Tax=Ectoc... [more]
H3GBW9_PHYRM3.300e-3061.90Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A8J2PRK1_9HEXA7.070e-3061.45Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A1V9Y7C0_9STRA2.460e-2960.92Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A8J2P540_9HEXA2.600e-2961.45Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A8J2PGC8_9HEXA4.060e-2961.45Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A225WXS0_9STRA5.380e-2961.45Microsomal Glutathione S-transferase n=1 Tax=Phyto... [more]
A0A8J2KTW7_9HEXA1.030e-2858.82Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10484contigA-nodosum_M_contig10484:4415..6256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FIN2
PFAMsMAPEG
Model size320
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.33e-31
EggNOG OGs2CUIV@1|root,2S4E5@2759|Eukaryota
EC2.5.1.18
Descriptionleukotriene-C4 synthase activity
Cds size318
COG categoryS
BRITEko00000,ko00001,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866423.6279595-CDS-A-nodosum_M_contig10484:4414..45191680866423.6279595-CDS-A-nodosum_M_contig10484:4414..4519Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10484 4415..4519 -
1680866423.640793-CDS-A-nodosum_M_contig10484:5166..52951680866423.640793-CDS-A-nodosum_M_contig10484:5166..5295Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10484 5167..5295 -
1680866423.6506534-CDS-A-nodosum_M_contig10484:6172..62561680866423.6506534-CDS-A-nodosum_M_contig10484:6172..6256Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10484 6173..6256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10484.1.1prot_A-nodosum_M_contig10484.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10484 4415..6256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10484.1.1

>prot_A-nodosum_M_contig10484.1.1 ID=prot_A-nodosum_M_contig10484.1.1|Name=mRNA_A-nodosum_M_contig10484.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=106bp
IQGQLSHHVRRRVGPRRQAFNCYQRAHQNILENYPQFLVLLALASVHRPT
IAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAV
RLFVS*
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mRNA from alignment at A-nodosum_M_contig10484:4415..6256-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10484.1.1 ID=mRNA_A-nodosum_M_contig10484.1.1|Name=mRNA_A-nodosum_M_contig10484.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1842bp|location=Sequence derived from alignment at A-nodosum_M_contig10484:4415..6256- (Ascophyllum nodosum dioecious)
ATTCAAGGTCAACTATCCCACCATGTACGCCGACGAGTCGGACCCCGACG
CCAAGCCTTCAACTGCTACCAGAGGGCTCATCAGGTACTATTCACAACAC
CTCGCTGCGCCGGGCGGCTTCCGGCCAGATATCAGATCCCGTCGCGCGAC
GATATCTATAGGTAGCGTAACATAGATTTTTACTGACCTACACCAGAAGC
ATGTACCGTCGGCACAGCCCTGCTTAGAAATAAGCAGTGATCCATTAACC
AAAGTGTAGTCGTACGTGGTTACAGTATACCCGAGTAGCATTTTGCTTCA
CTCACGTTATACACTACCAATATTAATAGCTCTTGCTCCAAGGTGAGGAA
CTCCTTGATGCCTGGGTTTTTCAACACCAGAGTTATCACCTATCTGCCAT
TCTGCAGCGTGATTTTGAGTCACACGGGAGTCCTGATGCATAAATAATGA
TTTTTCATGGTGCAGCTTCCCACCTTCCTTTCTTTTTTAGGTCTTGTATT
TTAGAAAATCTCAGCGCGCAATGATTTAAAACAGCAAAAAGTAGCTTTGA
AAGTGGGAAGAAGAAGAAGAAAAATCGAGGTGGCTGAAAAAATGAAATCT
GCTCAAAATTAAACGGCGTTTGTTGAGTCGGTGAATAATACCTCTTCAAA
AAATAGTTTCAGGACCCAATCAGAAGCATCCCGCTGTTTTTGGGCTATGG
TGCGCTGAAAGTACAGAAGAAACAGCAACTCAACGCAGCTGCGTTTTGGC
ACACCCCATTTTCCTCCATGACGAGCATGGAGTCTCTCGATCCAGTGTCA
GCTGACCCGCTCTTGTCGAGTAGATGTGCGGCAGACCCCATGCATGCGGG
TAGGGCAACGGTACTGCTGACAAACATGTGATAATGTCGGCGGCGAAAGA
TCCCTCACACGCCGAAGATGTTTTTGATTGCCTCCGGCGTCGGTACCCTA
TCCGCCCGCAGAACATTCTGGAGAACTATCCTCAGTTCCTCGTCCTGCTG
GCCCTGGCGTCGGTGCACCGCCCCACCATAGCCGCGATCGCGGGCGCGAT
CCGCTTGATGGGATTCGTTTCGTATGCCCTCGGTTATCAGGTAACTTCTT
GCACGTAATGATAACCGGAATTAACTTGTGTGCAGTACGCACAAGTGTGC
GCCACGTTGGTGCGACGAGTGAAATTTGCTCTTTGCTCTACTAAAAGTCT
AAATAGTTTGTCGCTGAAAGTTTACCCCTGAAATTTCTGTGCGAGAAGAA
ATTTATCAACGGCTTCATGGATGCTGGAATCACCCCCCCCCAATCTAGCC
TGCACTTCGGTGTGGCCCATCCGCTCTGCCAATTGATGAACCCCTCTGTT
GAAGTATCGTCGTGGTACAGTTTTTGCGCGACCGGTGCAACCCTTTGCGG
CGGTCTAGAGGACTGCAGCAATCCATGCCGTCACCTGTCCCTTGCCAAAC
CTGTGATGGCAAGCAAGGCTTCGCATTTAGAAAGTTTGTTATTGAAGTAC
CATATAGTGGAAATAGGGTTGGGCTGACTTCTCGCCGAGCTGCCTGATGC
AACATCCGCCTACTTTTTGTCCAAGTACGCGCGCTGACTTGCGAAAATAG
AAATCTAACCAGAGTTCAATGATAGCACTAGCATGGCGTTCCTGCTGAAC
GCGCCACCACATTGAGCGCGGTCATACCTGCACCCCCCCCCCTCCCCCCC
GTTTTTGCCCGGAAATGCTTCGTACCGATTTCCGTAGACTGGAGACCCCG
ACAAACGTTTCCGTGGAACCTTCGGCTACATCGGTTTTCTGGCCCTTCTG
GTATTGTCCCTTGAGCTTGCGGTCAGACTCTTTGTCTCCTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10484:4415..6256-

>mRNA_A-nodosum_M_contig10484.1.1 ID=mRNA_A-nodosum_M_contig10484.1.1|Name=mRNA_A-nodosum_M_contig10484.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at A-nodosum_M_contig10484:4415..6256- (Ascophyllum nodosum dioecious)
ATTCAAGGTCAACTATCCCACCATGTACGCCGACGAGTCGGACCCCGACG
CCAAGCCTTCAACTGCTACCAGAGGGCTCATCAGAACATTCTGGAGAACT
ATCCTCAGTTCCTCGTCCTGCTGGCCCTGGCGTCGGTGCACCGCCCCACC
ATAGCCGCGATCGCGGGCGCGATCCGCTTGATGGGATTCGTTTCGTATGC
CCTCGGTTATCAGACTGGAGACCCCGACAAACGTTTCCGTGGAACCTTCG
GCTACATCGGTTTTCTGGCCCTTCTGGTATTGTCCCTTGAGCTTGCGGTC
AGACTCTTTGTCTCCTAA
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