prot_A-nodosum_M_contig1047.5.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1047.5.1
Unique Nameprot_A-nodosum_M_contig1047.5.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length1272
Homology
BLAST of mRNA_A-nodosum_M_contig1047.5.1 vs. uniprot
Match: A0A6H5KXN8_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN8_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 5.360e-20
Identity = 138/340 (40.59%), Postives = 172/340 (50.59%), Query Frame = 0
Query:  964 DYEDAGGDEPAEGREMTGSSIEERFVESSQHAPGQSVPLPSKR-----------KRQQGDAPARELKEICDLTDMAEVGELIEGEGDAVVHES--KRGKGLGGKRQVTCARATIEEISEDDDYVHVGDVLPVEPGALQRPLPSGGHSENPSSRRKFRFFSSVSQHCEANSSCVDFA-QAAAPSAGATGAKSYVARRKLREAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVKGRGKRGENGDATR-----SFVQPFGGGRGGVPSASWIPTGVAASLSSSAGEKEDQGQRRP---------------FNHYRGNDDVVDDLEVGGGAGWEGAGRINLG 1269
            DY D  GD+  E  EM  S IEERF+ S       + P P  R           KR +   PA    ++ DLT      E+++ +G     ++  + GKG  G      A A +E+IS+          LP   G+      +GG    P   RKFRFFS+V +H +  +SC+DFA  AAAP+ GA+G KSY  R+  R+ K XXXXXXXXXXXXXXXXXXXXXXXXXXXX                     S V+PFG G GGVPS+SWIP GVAA LSSS                           FNHY+GND++VDD   GGG  WEG G+ + G
Sbjct: 1066 DYLDEDGDD-FEQYEMVSSQIEERFLRSQPEGGVDTSPNPQGRPQSVEGLSPSPKRSRRRVPAPSPGQVLDLT------EIVDNDGSGPDRDTAPRGGKGRAG------AGAMVEDISDXXXXXXXXFSLPGLKGSTA--AAAGGERAPP---RKFRFFSNVREHRDRGTSCIDFAAMAAAPAGGASGTKSYAVRKTARDRKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSVRPFG-GTGGVPSSSWIPAGVAAGLSSSGSAXXXXXXXXXXXXXXXXXXXXXXXXFNHYQGNDEMVDDSIGGGGFHWEGVGQTSFG 1386          
BLAST of mRNA_A-nodosum_M_contig1047.5.1 vs. uniprot
Match: D7FLU0_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU0_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 8.500e-16
Identity = 113/361 (31.30%), Postives = 145/361 (40.17%), Query Frame = 0
Query:  964 DYEDAGGDEPAEGREMTGSSIEERFVESSQHAPGQSVPLP---------------SKRKRQQGDAPARELKEICDLTDMAEVGELIEGEGDAVVHESKR--GKGLGGKRQVTCARATIEEISEDDDYVHVGDVLPVEPGALQRPLPSGGHSENPSSRRKFRFFSSVSQHCEANSSCVDFA-QAAAPSAGATGAKSYVARRKLREAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVKGRGKRGENGDATRSFVQPFGGGR-----------GGVPSASWIPTGVAASLSSSAGEKEDQG--------------------------QRRPFNHYRGNDDVVDDLEVGGGAGWEGAGRINLG 1269
            DY D  GD+  E  EM  S IEERF+ S       + P P               S R+R     PA     + DLT      E ++ +      ++ R  GKG  G      A A +E+IS+          LP   G+      +GG    P   RKFRFFS+V +H +  +SC+DFA  AAAP+ GA+G KSY  R+  R+   XXX                            GRG                               GGVPS+SWIPTGVAA LSS +      G                          Q++PFNHYRGND++VDD   GGG  WEG G+ + G
Sbjct:  810 DYLDEDGDD-FEQSEMVSSQIEERFLRSQPEGGEDTSPNPRGRXXXXXXXXXXXXSSRRR----VPAPPPGHVLDLT------ETVDNDDSGPDRDTARRGGKGRAG------AGAMVEDISDXXXXXXXXFSLPGLKGSTAGA--AGGERAPP---RKFRFFSNVREHRDRGTSCIDFAAMAAAPAGGASGTKSYADRKTARDXXXXXXKRGSKKSKAPRARATAAGA-------AAGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGVPSSSWIPTGVAAGLSSRSAGLSSSGSAAGRRAXXXXXXXXXXXXXXXRGRRQQQPFNHYRGNDEMVDDSIGGGGFHWEGVGQTSFG 1141          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1047.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXN8_9PHAE5.360e-2040.59RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7FLU0_ECTSI8.500e-1631.30RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 774..798
e-value: 4.9E-6
score: 36.1
coord: 20..44
e-value: 0.0094
score: 25.2
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 22..41
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 776..795
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 18..47
score: 8.625751
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 772..801
score: 9.03227
NoneNo IPR availableGENE3D2.30.30.380coord: 770..807
e-value: 1.4E-5
score: 26.8
coord: 14..56
e-value: 3.1E-5
score: 25.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 354..388
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1134..1271
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 250..304
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 577..593
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 985..1005
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1033..1053
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1230..1250
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1079..1107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 948..971
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 329..766
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 463..505
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 869..883
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1036..1051
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 726..763
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 812..1020
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 519..561
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 445..462
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 664..695
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 281..304
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 821..844
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 773..799
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 19..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1047contigA-nodosum_M_contig1047:28451..32597 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1047.5.1mRNA_A-nodosum_M_contig1047.5.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1047 28034..33562 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1047.5.1 ID=prot_A-nodosum_M_contig1047.5.1|Name=mRNA_A-nodosum_M_contig1047.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1272bp
MGSVDALVGAATVAPDASEGAWPCPKCTFLNGADTTLCALCEQGRLHTGN
GKGKGRAGLRPRSTRFSRATPSRMPSLADSSMEEAAERDEDEEDADDFEV
PTNSSVSKKSSRGVRRSKRARAVETNAVENGNATAAPAPGYEPGGFKVSV
EAGPATEAVTGGQQQLVELDDSDQGEGVNNEFGTLSVRGGSDEEEWHDDD
DNLAGETPSLLGRGWSAKDRRCAEEHKNRARALDLSSSCGDVEVVGAGVG
GRKRRGATSGRRGGKRVRPPSPSPWDDIFRARKYPVAEDEENAGADGDDK
PLVVRRRNLATRGRVRTFWRWPPPPPPGEVTVDRTWSIAGSFAGDGVAAG
DECPRSGESEENHSQNESKCEAGEDRDGGKRDEGSSSRGKGWRAPSLAAT
MPNEQHGQRPKRRRSRLSLPKREKDDRSKAAPAPAAAASPTEDRALQRPS
PQPISTSATDVARAAKNRDEELNENACHAKKPHGCDGRGVSSRKGKSKRK
EESSPDLLGIVVGEDSGADGLKSKGRCGRGQRTEKIVEGEEEGNSGSLAT
REVERFGDDGAPGRGGLESPPETSIGNDTHRVEEAKSERGTLGVRDPLVE
AGTIVDADKGAGVVGSFSRISKVMSYDMGSDDGSEDSDETQGGSVDSGGK
PRHLGRAMDAAVENTTAPVSSSSPSPSSAAAEAVSSETKSVCPTPGLKTP
SKKPGEDEGRPSFKKSPHPLSMDLVDTPPQPTTKTEDKQSTAGKTSLQKL
RPSRASTEMEMLAETSPSVAAPREQWACAVCTLLNRARALVCDVCHAEKP
SFVPKLMRGAGSTDTGEMMPGCWDSDDDPEAGCSEDDDDFSDENPPVDTS
IAGDSESPKSESSGEKGWRVGSKAQSNTPDDRVKVGKNTAGNRRASLETA
AAAGKRRGAGARGVEVATGNRKVLGAGSVGDDYAGLEWGWEGDADEGGSG
DNYYEENDDDDDEDYEDAGGDEPAEGREMTGSSIEERFVESSQHAPGQSV
PLPSKRKRQQGDAPARELKEICDLTDMAEVGELIEGEGDAVVHESKRGKG
LGGKRQVTCARATIEEISEDDDYVHVGDVLPVEPGALQRPLPSGGHSENP
SSRRKFRFFSSVSQHCEANSSCVDFAQAAAPSAGATGAKSYVARRKLREA
KASRSKRGKGKMAKEPAASSRARGAAGRGGKVKGRGKRGENGDATRSFVQ
PFGGGRGGVPSASWIPTGVAASLSSSAGEKEDQGQRRPFNHYRGNDDVVD
DLEVGGGAGWEGAGRINLGGD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR036443Znf_RanBP2_sf