mRNA_A-nodosum_M_contig1043.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1043.2.1
Unique NamemRNA_A-nodosum_M_contig1043.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1043.2.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 207 bits (527), Expect = 2.010e-61
Identity = 97/103 (94.17%), Postives = 101/103 (98.06%), Query Frame = 1
Query:    1 VGSPTHPSYPSGHATQNGAFATVLKALIGLERGGECFPNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTLHQ 309
            VGSPTHPSYPSGHATQNGAFATVLKALIGL+RGGECFPNPVFP DDGLELI FEG+CLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGL+LGETIT+RTLHQ
Sbjct:  525 VGSPTHPSYPSGHATQNGAFATVLKALIGLDRGGECFPNPVFPSDDGLELINFEGACLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQ 627          
BLAST of mRNA_A-nodosum_M_contig1043.2.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 198 bits (504), Expect = 6.310e-59
Identity = 91/102 (89.22%), Postives = 100/102 (98.04%), Query Frame = 1
Query:    4 GSPTHPSYPSGHATQNGAFATVLKALIGLERGGECFPNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTLHQ 309
            GSPTHPSYPSGHATQNGAFATVLKALIGL+RGG+C+P+PV+PDDDGL+LI F GSCLT+EGEINKLAVNVAFGRQMLGIHYRFDGIQGL+LGETIT+RTLHQ
Sbjct:  407 GSPTHPSYPSGHATQNGAFATVLKALIGLDRGGDCYPDPVYPDDDGLKLIDFRGSCLTFEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQ 508          
BLAST of mRNA_A-nodosum_M_contig1043.2.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 6.770e-44
Identity = 73/102 (71.57%), Postives = 84/102 (82.35%), Query Frame = 1
Query:    4 GSPTHPSYPSGHATQNGAFATVLKALIGLERGGECFPNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTLHQ 309
            GSPTHPSYP+GHATQNGAFATVLKAL+GLERG +CF +P  PDD+GL L+ F G CLT+EGEINKLAVNVAFGR M G+H+R D  QGL+LGE   +R L Q
Sbjct:  465 GSPTHPSYPAGHATQNGAFATVLKALVGLERGSDCFRDPKVPDDEGLTLLDFTGDCLTFEGEINKLAVNVAFGRNMCGVHWRIDSEQGLLLGEMAAVRILQQ 566          
BLAST of mRNA_A-nodosum_M_contig1043.2.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.450e-42
Identity = 74/106 (69.81%), Postives = 86/106 (81.13%), Query Frame = 1
Query:    4 GSPTHPSYPSGHATQNGAFATVLKALIGLERGGECFPNPVFPDDDGLELIAFEG----SCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTLHQ 309
            GSPTHPSYP+GHATQNGAFATVLKAL+GLERG  CF +PVFPDD+GL L+ + G    +CLT+EGEINKLAVNVA GR MLG+H+R D   GL+LGET  +R L Q
Sbjct:  472 GSPTHPSYPAGHATQNGAFATVLKALVGLERGSVCFNDPVFPDDEGLTLLPYTGDDGNNCLTFEGEINKLAVNVALGRNMLGVHWRIDSELGLLLGETAAVRILQQ 577          
BLAST of mRNA_A-nodosum_M_contig1043.2.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 150 bits (379), Expect = 2.370e-40
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = 1
Query:    4 GSPTHPSYPSGHATQNGAFATVLKALIGLERGGECFPNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTLHQ 309
            GSPTHPSYPSGHA QNGAF+T+LKAL+GLERG ECF +PV P DDGL L+ F+G CLT+EGEINK A NVA GR  +G+H+R D  +GL+LGET+ +R L Q
Sbjct:  454 GSPTHPSYPSGHAVQNGAFSTILKALVGLERGLECFNDPVVPSDDGLTLLPFDG-CLTFEGEINKYAANVALGRNWMGVHWRMDAQEGLLLGETVAVRILMQ 554          
BLAST of mRNA_A-nodosum_M_contig1043.2.1 vs. uniprot
Match: Q7X9V0_9PHAE (Vanadium-dependent bromoperoxidase 2 n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7X9V0_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 8.840e-30
Identity = 57/119 (47.90%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    4 GSPTHPSYPSGHATQNGAFATVLKALIGLERGGECFPNPVFPDDDGLELIAFE-------GSC----------LTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTLHQ 309
            GSPTHP+YPSGHA  NGA+ T LKA +G E G +CFPNPV  +D+G + I ++       G C          LTYEGE+NK++ NV  GR  +G+H+R DG+ G ++GET  +R L Q
Sbjct:  475 GSPTHPAYPSGHAINNGAYITALKAFLGYEAGQKCFPNPVVSNDEGTKRIKYKPSGREIVGECVNEKGKLVEGLTYEGELNKISANVLLGRSHIGVHWRMDGVYGALMGETSCVRRLQQ 593          
BLAST of mRNA_A-nodosum_M_contig1043.2.1 vs. uniprot
Match: A0A4Y7RBA7_9FIRM (PAP2 superfamily protein n=2 Tax=Pelotomaculum TaxID=191373 RepID=A0A4Y7RBA7_9FIRM)

HSP 1 Score: 110 bits (276), Expect = 3.580e-26
Identity = 57/104 (54.81%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    4 GSPTHPSYPSGHATQNGAFATVLKALIGLERGGECFPNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTLHQVR 315
            G PTHP+YPSGHAT  GA  T+LKA     +     PNPV    DGL L+ +EG  LT  GE+NKLAVN+A GR   GIH+R DG +GL LGET+ IR L   R
Sbjct:  465 GCPTHPAYPSGHATYIGAGVTMLKAFF---KESFVLPNPVVAGPDGLSLLPYEGPPLTVGGELNKLAVNIAMGRDFAGIHWRTDGSEGLKLGETVAIRILQDYR 565          
BLAST of mRNA_A-nodosum_M_contig1043.2.1 vs. uniprot
Match: A0A5C7QWN2_9GAMM (Phosphatase PAP2 family protein (Fragment) n=1 Tax=Thiothrix sp. TaxID=1032 RepID=A0A5C7QWN2_9GAMM)

HSP 1 Score: 106 bits (265), Expect = 1.200e-25
Identity = 56/107 (52.34%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    4 GSPTHPSYPSGHATQNGAFATVLKALIGLERGGECFP--NPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTLHQVRI 318
            GSPTHPSYPSGHAT  GA ATVLKA        E F   N V   DDGL L+ +  + LT  GEINKLA N+A GR   G+HYR D IQGL++GE + +  L + ++
Sbjct:  195 GSPTHPSYPSGHATIAGACATVLKAFF-----NESFVLNNSVIASDDGLSLLPYNSNALTVGGEINKLAGNIALGRDYAGVHYRQDAIQGLLVGEKVALNLLSEAKL 296          
BLAST of mRNA_A-nodosum_M_contig1043.2.1 vs. uniprot
Match: S4XN83_SORCE (Uncharacterized protein n=4 Tax=Sorangium cellulosum TaxID=56 RepID=S4XN83_SORCE)

HSP 1 Score: 108 bits (269), Expect = 2.700e-25
Identity = 55/104 (52.88%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    4 GSPTHPSYPSGHATQNGAFATVLKALIGLERGGECF--PNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTLHQ 309
            G PTHPSYP+ HATQ GA  TVLKA        E F  PNPV   DDGL L+ + G  LT  GE+NKLA N+A GR   G+HYR DG+ G++LGE I +  L +
Sbjct:  404 GCPTHPSYPAAHATQAGACVTVLKAFF-----NESFVIPNPVVASDDGLSLVPYTGPALTVGGELNKLATNIAHGRDGGGVHYRSDGVAGMLLGEAIALSILSE 502          
BLAST of mRNA_A-nodosum_M_contig1043.2.1 vs. uniprot
Match: A0A1V5BZB2_9FIRM (PAP2 superfamily protein n=3 Tax=Pelotomaculum TaxID=191373 RepID=A0A1V5BZB2_9FIRM)

HSP 1 Score: 107 bits (268), Expect = 3.530e-25
Identity = 54/104 (51.92%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    4 GSPTHPSYPSGHATQNGAFATVLKALIGLERGGECFPNPVFPDDDGLELIAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRTLHQVR 315
            GSPTHP+YPSGHAT  GA  T+LKA     +     PNPV    DGL+L+ + G  LT  GE+NKLA N+A GR   GIH+R DGI+G+ LGE + I  L   R
Sbjct:  395 GSPTHPAYPSGHATYTGAGVTMLKAFF---KESFIIPNPVVASADGLKLLPYSGPPLTVGGELNKLAANIALGRDFAGIHWRTDGIEGIKLGEAVAIGILQDYR 495          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1043.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
O82433_FUCDI2.010e-6194.17Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
PRXV_ASCNO6.310e-5989.22Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
B7ZGM6_9PHAE6.770e-4471.57Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
Q4LDE6_9PHAE1.450e-4269.81Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
A0A3G3BM28_SACJA2.370e-4067.65Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
Q7X9V0_9PHAE8.840e-3047.90Vanadium-dependent bromoperoxidase 2 n=2 Tax=Lamin... [more]
A0A4Y7RBA7_9FIRM3.580e-2654.81PAP2 superfamily protein n=2 Tax=Pelotomaculum Tax... [more]
A0A5C7QWN2_9GAMM1.200e-2552.34Phosphatase PAP2 family protein (Fragment) n=1 Tax... [more]
S4XN83_SORCE2.700e-2552.88Uncharacterized protein n=4 Tax=Sorangium cellulos... [more]
A0A1V5BZB2_9FIRM3.530e-2551.92PAP2 superfamily protein n=3 Tax=Pelotomaculum Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1043contigA-nodosum_M_contig1043:17046..18393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1254432.SCE1572_09075
Model size321
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.42e-26
EggNOG OGsCOG0671@1|root,COG0671@2|Bacteria,1PMVX@1224|Proteobacteria
Descriptionphosphoesterase, PA-phosphatase related
Cds size321
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866418.1198893-CDS-A-nodosum_M_contig1043:17045..171201680866418.1198893-CDS-A-nodosum_M_contig1043:17045..17120Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1043 17046..17120 +
1680866418.1315968-CDS-A-nodosum_M_contig1043:17731..178801680866418.1315968-CDS-A-nodosum_M_contig1043:17731..17880Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1043 17732..17880 +
1680866418.1397097-CDS-A-nodosum_M_contig1043:18296..183931680866418.1397097-CDS-A-nodosum_M_contig1043:18296..18393Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1043 18297..18393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1043.2.1prot_A-nodosum_M_contig1043.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1043 17046..18393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1043.2.1

>prot_A-nodosum_M_contig1043.2.1 ID=prot_A-nodosum_M_contig1043.2.1|Name=mRNA_A-nodosum_M_contig1043.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=107bp
VGSPTHPSYPSGHATQNGAFATVLKALIGLERGGECFPNPVFPDDDGLEL
IAFEGSCLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLILGETITIRT
LHQVRIL
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mRNA from alignment at A-nodosum_M_contig1043:17046..18393+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1043.2.1 ID=mRNA_A-nodosum_M_contig1043.2.1|Name=mRNA_A-nodosum_M_contig1043.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1348bp|location=Sequence derived from alignment at A-nodosum_M_contig1043:17046..18393+ (Ascophyllum nodosum dioecious)
GTGGGATCGCCAACGCACCCTTCGTACCCGTCCGGCCACGCTACCCAAAA CGGAGCATTTGCCACAGTTCTAAAGGTTAGCGTCGGTTGGTGGATGTACA TGATTTGATGTATTTTAACTTTGCTTTGTTGGCAATTTCATTCTACGGTA CGATAGAAgGGGGAAAGTAATATTTTCGACTAGCCAGCGCTGACCAATAG CCTAATGGGTCAATGTCCGTCAGCTGTAGAGGAAAGACTTTGGTCTGATT CTCAGGTTGAGACTGAACGAGGTTTTTATCGACCTCTGACGGCCCTCGGG ATAGATATAAGATAAGTGACGGAATAACTCTAGCGGACCTTGGCACTCTG ACTCAGAAAGGAGTCCGACGATTGAAAGGGAGAAAATGTGGAGGAATCCA AATGCGGCATAGAGAGTAGCATTTTCAAGCGGTGTCGGCCTCCTCGGAGT GAAAGTACTGCGCCCTTCGAGCTCCCACGACCACCTTCATTTGAGTGGCG AGAAGTACGTGCAATATAGAAATTCACCCTGCGCTGCTAGATTCGAACTG ATACGCTATATGTGGGGGAGTATATCGAAGTTGGTCCTGAAACTCTACAT GTCCTTGCGCCCTCGATATATATGGCCCCTTCCGCACCCTGGCTCTGTTT CGCTTTTCCCACGGGAAACCGTAATATGTGAACCAGGCTCTCATTGGCCT AGAACGGGGGGGCGAGTGCTTTCCCAACCCCGTGTTCCCAGACGATGACG GCCTGGAACTAATCGCCTTCGAAGGGAGTTGCCTCACGTATGAGGGAGAG ATCAACAAACTCGCGGTCAACGTTGCATTCGGGAGGTGAAAACTATGGGG GGGCTTGCGAGCTTCGTACAAAACTGTTTAAACTATGCTATTCTAAGTTA AACCACGAGGTATATCATACCAAGGCATGCACTGTAGCATGCACAACACA CAAACGGGAATGTCGGCTAGCATATAAAATATACGTTATAGTTTATCTAC ATAATCAGCGTGCTCGTAAGTACTAAAGAAATGAAGCCATAGTTGATATT ATTTTCATTCACTGTGCTGGTGTAACCTCCGACATGTTGATGGACGCGCA GTAAATCATTCCAGGTGGAAAGAGCATATACAACACATCATATGACTCCG TATGGACTCAGCAGATAGTTGATGGAATTGTTAGCGTGGTCATGATTTAG ATGTTTGACTCCCAGATGTGACGCTGTTTTCGTTTTGTTTGGTGATTGCA GGCAGATGCTGGGCATCCACTATCGGTTTGACGGCATTCAAGGCCTGATC CTCGGAGAGACAATCACTATACGAACACTTCACCAGGTAAGAATACTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1043:17046..18393+

>mRNA_A-nodosum_M_contig1043.2.1 ID=mRNA_A-nodosum_M_contig1043.2.1|Name=mRNA_A-nodosum_M_contig1043.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=321bp|location=Sequence derived from alignment at A-nodosum_M_contig1043:17046..18393+ (Ascophyllum nodosum dioecious)
GTGGGATCGCCAACGCACCCTTCGTACCCGTCCGGCCACGCTACCCAAAA
CGGAGCATTTGCCACAGTTCTAAAGGCTCTCATTGGCCTAGAACGGGGGG
GCGAGTGCTTTCCCAACCCCGTGTTCCCAGACGATGACGGCCTGGAACTA
ATCGCCTTCGAAGGGAGTTGCCTCACGTATGAGGGAGAGATCAACAAACT
CGCGGTCAACGTTGCATTCGGGAGGCAGATGCTGGGCATCCACTATCGGT
TTGACGGCATTCAAGGCCTGATCCTCGGAGAGACAATCACTATACGAACA
CTTCACCAGGTAAGAATACTG
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