prot_A-nodosum_M_contig971.26.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig971.26.1
Unique Nameprot_A-nodosum_M_contig971.26.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length134
Homology
BLAST of mRNA_A-nodosum_M_contig971.26.1 vs. uniprot
Match: A0A6H5KEM4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM4_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.780e-26
Identity = 59/129 (45.74%), Postives = 87/129 (67.44%), Query Frame = 0
Query:    5 GAISWHSRMQE-VTASGTSEAEYVVLSEVVEEVIFLRQVQEFMGPPMRVGAVNLFEDNEGAIKLATNKHAINSRRTKHIDVNHHLVRDASDARKVKVAYVRSKDQHADLLTKPLDMQKFYKHAKFILNV 132
            GA+SW SR Q+ VT S T+EAEYVVL +VV++++FLRQ+  FM P + +  + +FEDN+GAI+LA N   I++  +KH DV HH +R+  + +++ V +V S  Q AD LTK L    F  H  F++N+
Sbjct:  218 GAVSWFSRRQKCVTLSTTTEAEYVVLGDVVKKILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNP--ISNSNSKHTDVRHHFLRELVERKEMSVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNL 344          
BLAST of mRNA_A-nodosum_M_contig971.26.1 vs. uniprot
Match: A0A6H5JNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU8_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.210e-22
Identity = 50/124 (40.32%), Postives = 79/124 (63.71%), Query Frame = 0
Query:    5 GAISWHSRMQEVTASGTSEAEYVVLSEVVEEVIFLRQVQEFMGPPMRVGAVNLFEDNEGAIKLATNKHAINSRRTKHIDVNHHLVRDASDARKVKVAYVRSKDQHADLLTKPLDMQKFYKHAKF 128
            G ++W SR Q+     T+EAEYV +++V+ EV+FLRQ+  FM P   +  + +FE N+GAI++A N   +NS  +KHIDV HH +R   + +++ + +V ++ QHAD LTK +  + F  H  F
Sbjct:  126 GCVTWFSRTQKCVTLSTTEAEYVAIADVLNEVLFLRQLWRFMLPDAGMPCIPVFEGNQGAIQIAHNP-IVNSN-SKHIDVRHHYIRGLVERKEISMTHVPTQFQHADFLTKAISKESFALHRDF 247          
BLAST of mRNA_A-nodosum_M_contig971.26.1 vs. uniprot
Match: A0A6H5L6V8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 7.330e-22
Identity = 52/128 (40.62%), Postives = 80/128 (62.50%), Query Frame = 0
Query:    5 GAISWHSRMQEVTASGTSEAEYVVLSEVVEEVIFLRQVQEFMGPPMRVGAVNLFEDNEGAIKLATNKHAINSRRTKHIDVNHHLVRDASDARKVKVAYVRSKDQHADLLTKPLDMQKFYKHAKFILNV 132
            GA+SW SR Q+     T+EAEYV L +VV +++FL Q+  FM P + +  + +FEDN+GAI+L  N   I++  +KHIDV HH +R+  + +++ V +V    Q AD+LTK L       H  F++N+
Sbjct: 1206 GAVSWFSRTQKCVTLSTTEAEYVALGDVVNDMLFLSQIWHFMLPQVGMPCIPVFEDNQGAIQLVQNP--ISNSNSKHIDVWHHFLRELEERKEISVIHVPLPYQRADILTKSLPTDTPESHVDFVMNL 1331          
BLAST of mRNA_A-nodosum_M_contig971.26.1 vs. uniprot
Match: A0A6H5KZC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZC8_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.430e-21
Identity = 52/132 (39.39%), Postives = 78/132 (59.09%), Query Frame = 0
Query:    1 MLAKGAISWHSRMQEVTASGTSEAEYVVLSEVVEEVIFLRQVQEFMGPPMRVGAVNLFEDNEGAIKLATNKHAINSRRTKHIDVNHHLVRDASDARKVKVAYVRSKDQHADLLTKPLDMQKFYKHAKFILNV 132
            M A   + +  R Q+     ++EAEYV +S+ ++E IFLR + +F+ P   VG   ++EDN GAI LA+N     +  +KHID+ HH +R+     + KV +VRS  Q AD LTKPL  + F  H  F++N+
Sbjct:   47 MFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNP--ATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 176          
BLAST of mRNA_A-nodosum_M_contig971.26.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY)

HSP 1 Score: 95.5 bits (236), Expect = 1.900e-21
Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = 0
Query:    2 LAKGAISWHSRMQEVTASGTSEAEYVVLSEVVEEVIFLRQV-QEFMGPPMRVGAVNLFEDNEGAIKLATNKHAINSRRTKHIDVNHHLVRDASDARKVKVAYVRSKDQHADLLTKPLDMQKFYK 124
            +A GAI+W SR Q+ T+  T+EAEYV  +E  +E I+LR +  E  G  +    V L+ DN+ AIKL   K+ I  +RTKHIDV +H +++      +K+ YVRS+DQ AD+LTKPL   KF K
Sbjct:  126 MANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIE--NVQLYVDNQSAIKLV--KNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADILTKPLVSVKFNK 245          
BLAST of mRNA_A-nodosum_M_contig971.26.1 vs. uniprot
Match: A0A6H5KSN7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSN7_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.910e-21
Identity = 54/125 (43.20%), Postives = 78/125 (62.40%), Query Frame = 0
Query:    1 MLAKGAISWHSRMQEVTASGTSEAEYVVLSEVVEEVIFLRQVQEFMGPPMRVGAVNLFEDNEGAIKLATNKHAINSRRTKHIDVNHHLVRDASDARKVKVAYVRSKDQHADLLTKPLDMQKFYKH 125
            M   G ISW SR Q+     T++AEYV L++V++EV+FLRQV  F  P   +  + +FEDN GAI+L  N   I++  +KH+DV HH +R+    +++ + +V S  QHAD LTK LD+  F  H
Sbjct: 1647 MCGGGCISWLSRTQKCVTLSTTQAEYVSLADVMKEVLFLRQVWRFTLPEAGMPFIPVFEDNRGAIQLVQNP--ISNSNSKHLDVRHHCIRELVGRKEISIFHVESAYQHADFLTKALDVGDFEFH 1769          
BLAST of mRNA_A-nodosum_M_contig971.26.1 vs. uniprot
Match: A0A6H5L610_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L610_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.950e-21
Identity = 51/132 (38.64%), Postives = 77/132 (58.33%), Query Frame = 0
Query:    1 MLAKGAISWHSRMQEVTASGTSEAEYVVLSEVVEEVIFLRQVQEFMGPPMRVGAVNLFEDNEGAIKLATNKHAINSRRTKHIDVNHHLVRDASDARKVKVAYVRSKDQHADLLTKPLDMQKFYKHAKFILNV 132
            M A   + +  R Q+     ++EAEYV +S+ ++E IFLR + + + P   VG   ++EDN GAI LA+N     +  +KHID+ HH +R+     + KV +VRS  Q AD LTKPL  + F  H  F++N+
Sbjct:    1 MFAGACVIYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKIIFPGCDVGCTPVWEDNVGAIHLASNP--ATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 130          
BLAST of mRNA_A-nodosum_M_contig971.26.1 vs. uniprot
Match: A0A6H5JQ86_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ86_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.240e-20
Identity = 48/120 (40.00%), Postives = 78/120 (65.00%), Query Frame = 0
Query:    1 MLAKGAISWHSRMQEVTASGTSEAEYVVLSEVVEEVIFLRQVQEFMGPPMRVGAVNLFEDNEGAIKLATNKHAINSRRTKHIDVNHHLVRDASDARKVKVAYVRSKDQHADLLTKPLDMQ 120
            M   G ++W SR Q+     T+EAEYVV+++V++EV+FLRQ    M P   +  + +FEDN+GAI++A N   I +  +KHIDV HH +R+  + +++ + +V ++ QHAD LTK +  +
Sbjct:  249 MCGGGCVAWFSRTQKCVTLSTTEAEYVVVADVLKEVLFLRQAWRSMLPDAGMPCIPVFEDNQGAIQIAHNP--ITNSNSKHIDVRHHFMRELVERKEISITHVPTQFQHADFLTKAISKE 366          
BLAST of mRNA_A-nodosum_M_contig971.26.1 vs. uniprot
Match: A0A6H5L4G3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G3_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.960e-20
Identity = 50/123 (40.65%), Postives = 76/123 (61.79%), Query Frame = 0
Query:    5 GAISWHSRMQEVTASGTSEAEYVVLSEVVEEVIFLRQVQEFMGPPMRVGAVNLFEDNEGAIKLATNKHAINSRRTKHIDVNHHLVRDASDARKVKVAYVRSKDQHADLLTKPLDMQKFYKHAK 127
            GA+SW SR Q+     T+EAEYV L +VV+E++FLRQ+  FM P + +  + +F+DN+GAIKLA N   I++  +K+ID  HH +R+    +++ V +V S  Q  D L K L    F   ++
Sbjct:  773 GAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFDDNQGAIKLAQNP--ISNSNSKYIDARHHFLRELVQRKEISVIHVPSPYQRDDFLAKSLSKDTFESRSR 893          
BLAST of mRNA_A-nodosum_M_contig971.26.1 vs. uniprot
Match: A0A7R9UQB3_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UQB3_DIALT)

HSP 1 Score: 91.7 bits (226), Expect = 3.360e-20
Identity = 49/120 (40.83%), Postives = 71/120 (59.17%), Query Frame = 0
Query:    7 ISWHSRMQEVTASGTSEAEYVVLSEVVEEVIFLRQVQEFMGPPMRVGAVNLFEDNEGAIKLATNKHAINSRRTKHIDVNHHLVRDASDARKVKVAYVRSKDQHADLLTKPLDMQKFYKHA 126
            ISWHS +Q   +  + EAEYV LSE   EV +LR + +F+  P       +FEDN+G I L  N   ++ RRTKH++V +H VRDA +  ++ V+ V +   HAD++TK  D   F +H 
Sbjct:  102 ISWHSGLQSTISLSSCEAEYVALSECCREVDYLRSIIDFLPQPS-ASPTEIFEDNQGTIDLVNNP--VHHRRTKHVEVKYHYVRDAQEKGRIVVSKVHTSLNHADIMTKATDNATFARHV 218          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig971.26.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEM4_9PHAE1.780e-2645.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JNU8_9PHAE3.210e-2240.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6V8_9PHAE7.330e-2240.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KZC8_9PHAE1.430e-2139.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1N3K4_PHOPY1.900e-2145.97Uncharacterized protein n=2 Tax=Photinus pyralis T... [more]
A0A6H5KSN7_9PHAE1.910e-2143.20Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L610_9PHAE4.950e-2138.64Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ86_9PHAE1.240e-2040.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4G3_9PHAE2.960e-2040.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A7R9UQB3_DIALT3.360e-2040.83Hypothetical protein n=1 Tax=Diacronema lutheri Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 1..120
e-value: 2.19214E-30
score: 104.472

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig971contigA-nodosum_M_contig971:120035..120436 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig971.26.1mRNA_A-nodosum_M_contig971.26.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig971 119852..121336 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig971.26.1 ID=prot_A-nodosum_M_contig971.26.1|Name=mRNA_A-nodosum_M_contig971.26.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=134bp
MLAKGAISWHSRMQEVTASGTSEAEYVVLSEVVEEVIFLRQVQEFMGPPM
RVGAVNLFEDNEGAIKLATNKHAINSRRTKHIDVNHHLVRDASDARKVKV
AYVRSKDQHADLLTKPLDMQKFYKHAKFILNVV*
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