prot_A-nodosum_M_contig962.18.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig962.18.2
Unique Nameprot_A-nodosum_M_contig962.18.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length400
Homology
BLAST of mRNA_A-nodosum_M_contig962.18.2 vs. uniprot
Match: D8LBB9_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBB9_ECTSI)

HSP 1 Score: 395 bits (1016), Expect = 3.740e-134
Identity = 212/315 (67.30%), Postives = 248/315 (78.73%), Query Frame = 0
Query:   93 APPTTQEEGNRTAVGGRVAREVLAFMAAIERGDLSTAVGLPVPPGVTILENLPGLGARR--STSAPALERVVKNLPRVQVEDDSWVLHQTVLVLRAKGK-ADLDVDAVFAPFSPPPSEPLIGPIVLAVPSTAHENFQNMGDIKGSVLVVDRGVCTFASKALRADAAGAAAAVIVQTHDVWPYVMEDSMGEVKAAGGLKIPVCMVSREKGEAIKKAL-REATEGETVRAELSVSSSEKDCIVCQELYAVGSTLVRLPCGHLYHEGCLLKWLKMRNTCPYCRQELPSSNEEVERERTRREGQEGS----EAWRGFFN 399
            A P T     R     RVAREVL FMAAIERG+ S AV LP+PPG   L    G         +APALE+VVK+LPR+QVE++SWVLHQTVL L   G  ++L ++AVFAPFSPPPSE ++GP+VL+VP TA ++ +N  D++GSVL++DRGVCTFASKALRA+AAGAAAAV+VQTHDVWPYVMEDS GE +A GGL IPVCMVS+EKGEAIK A+ R A EG+T+RAELSVSSSEKDCIVCQELYAVG+TLVRLPCGHLYHE CLLKWLK+ NTCPYCR+ELPSSNE VER R  R+   G+    EAWR FF+
Sbjct:    2 AAPETPPPTRRAQASERVAREVLNFMAAIERGE-SLAVELPLPPGAVGLGGAVGTNGXXXXGRAAPALEQVVKDLPRIQVEENSWVLHQTVLRLTGGGAGSELSIEAVFAPFSPPPSEKVLGPVVLSVPPTADKDLENEADVEGSVLLMDRGVCTFASKALRANAAGAAAAVVVQTHDVWPYVMEDSKGEAEAGGGLNIPVCMVSKEKGEAIKAAVVRSAAEGKTIRAELSVSSSEKDCIVCQELYAVGNTLVRLPCGHLYHEACLLKWLKLSNTCPYCRRELPSSNEAVERARRSRQAAGGAGGEEEAWRTFFD 315          
BLAST of mRNA_A-nodosum_M_contig962.18.2 vs. uniprot
Match: A0A835YU93_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU93_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.870e-42
Identity = 85/173 (49.13%), Postives = 110/173 (63.58%), Query Frame = 0
Query:  197 VFAPFSPPPSEPLIGPIVLAVPSTAHENFQNMGDIKGSVLVVDRGVCTFASKALRADAAGAAAAVIVQTHDVWPYVMEDSMGEVKAAGGLKIPVCMVSREKGEAIKKALREATEGETVRAELSVSSSEKDCIVCQELYAVGSTLVRLPCGHLYHEGCLLKWLKMRN-TCPYCR 368
            + A FS    E + GP+V A P  A     N   ++GSV+VV RG CTFA+KA RA AAGAAA V++ T D WPYVM DS GE +A+  L IPV MVS + G+   K L+       VR  LS SSS ++C++CQE Y VG+ +V+LPC H++HEGC+  WL   + TCP CR
Sbjct:    1 MLARFSSRSQEVVQGPLVAAQPLLADSVLVNADALRGSVVVVQRGRCTFAAKAARAQAAGAAAVVVLNTCDTWPYVMTDSQGEAEASA-LTIPVAMVSEQDGD---KLLQVVQRHAAVRCHLSTSSSSRECVICQEPYTVGTQVVKLPCAHMFHEGCVTNWLSRHSSTCPTCR 169          
BLAST of mRNA_A-nodosum_M_contig962.18.2 vs. uniprot
Match: A0A5D6YB84_9STRA (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB84_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.990e-39
Identity = 101/275 (36.73%), Postives = 145/275 (52.73%), Query Frame = 0
Query:  100 EGNRTAVGGRVAREVLAFMAAIERGDLSTAVGLPVPPGVTILENLPGLGAR-RSTSAPALERVVKNLPRVQVEDDSWVLHQTVLVLRAKGKADLDVDAVFAPFSPPPSEPLIGPIVLAVPSTAHENFQNMGDIKGSVLVVDRGVCTFASKALRADAAGAAAAVIVQTHDVWPYVMEDSMGEVKAAGGLKIPVCMVSREKGEAIKKALREATEGETVRAELSVSSSEKDCIVCQELYAVGSTLVRLPCGHLYHEGCLLKWLKMRNTCPYCRQELPS 373
            +G+ T VGG+  + +LA M  +                V +   L G G    S   PA +  V NL      D +  +   V+V   KG    +V AV A F P  S      +V+A P        N  D++G ++V++RGVCTFA K LRA  AGAAA  IVQT DVWPY M DS GE K    + IP  M+S + G  + + LR     E V A+++V    ++C++CQ   ++G T+ R+PC H++H GCL +WL++ N+CP CR E+P+
Sbjct:   18 DGDATRVGGQDLQTLLARMMEL----------------VGVDGGLNGFGGESNSNRRPASDAAVTNLGSFTA-DQASTIEVAVVVKGIKG----EVVAVPANFGPCESLQQCE-VVVAEPFDGSTPLANAADVRGKIVVMERGVCTFAQKVLRAQGAGAAAVFIVQTMDVWPYTMTDSKGESKP---IAIPAFMLSTKHGNGLVEYLRSKAGKEAVVADVAVRRDARECVICQGELSIGMTVTRMPCQHMFHTGCLHQWLQIGNSCPICRVEIPA 267          
BLAST of mRNA_A-nodosum_M_contig962.18.2 vs. uniprot
Match: A0A8K1FJH4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJH4_PYTOL)

HSP 1 Score: 150 bits (379), Expect = 2.230e-38
Identity = 86/228 (37.72%), Postives = 125/228 (54.82%), Query Frame = 0
Query:  148 GARRSTSAPALERVVKNLPRVQVEDDSWVLHQTVLVLRAKGKADLDVDAVFAPFSPPPSEPLIGPIVLAVPSTAHENFQNMGDIKGSVLVVDRGVCTFASKALRADAAGAAAAVIVQTHDVWPYVMEDSMGEVKAAGGLKIPVCMVSREKGEAIKKALREATEGETVRAELSVSSSEKDCIVCQELYAVGSTLVRLPCGHLYHEGCLLKWLKMRNTCPYCRQELPSSN 375
            G       PA +  V  L      D +  +   ++V   KG    +V A+ A F P  S P    +V+A P        N   I G ++V++RG CTFA K LRA +AGAAA +I+QT DVWPY M DS GE      + IP  M+S ++G+   + LR+ T  E   AE++V    ++C++CQ    +G+TL R+PC H++H  CL +WLK+ N+CP CR E+ S +
Sbjct:   99 GVSNEARRPASDEAVTKLGSFTA-DQASTIEVAMVVSGIKG----EVLAIPANFGPCDSLPR-AEVVVADPIDGASQLANAASIAGKIVVMERGTCTFAQKVLRAQSAGAAAVIIIQTFDVWPYTMTDSKGESSV---ITIPAFMLSMKQGQRFLEYLRDQTRDEDAVAEITVRKDARECVICQVDMTIGATLTRMPCQHMFHTECLHQWLKIGNSCPICRVEIQSKH 317          
BLAST of mRNA_A-nodosum_M_contig962.18.2 vs. uniprot
Match: K3X027_GLOUD (RING-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X027_GLOUD)

HSP 1 Score: 148 bits (374), Expect = 1.030e-37
Identity = 107/308 (34.74%), Postives = 157/308 (50.97%), Query Frame = 0
Query:   97 TQEEGNRTAVGGRVAREVLAFMAAIERG---DLSTAVGLPVPPGVTILENLPGLGARR-STSAPALERVVKNLPRVQVEDDSWVLHQTVLVLRAKGKADLDVDAVFAPFSPPPSEPLIGPIVLAVPSTAHENFQNMGDIKGSVLVVDRGVCTFASKALRADAAGAAAAVIVQTHDVWPYVMEDSMGEVKAAGGLKIPVCMVSREKGEAIKKALREATEGETVRAELSVSSSEKDCIVCQELYAVGSTLVRLPCGHLYHEGCLLKWLKMRNTCPYCRQELPSSNEEVERERTRREGQE-GSEAWRGFFN 399
            T ++G R  + G   ++  A  +A       +L+ A+G     G T  ++L  L  R  S     L+  V +L    V D +  +  T+ V   KG    +V AV A F P  S      +VLA P      F N   + G V+V++RGVCTFA K LRA AAGA AA+I+QT DVWPY M DS GE   +  + IP  M+S ++G    + LR         A+++V    ++C++CQ   A+G  + R+PC HL+H  CL +WLK+ N+CP CR E+P+           +  Q+ G  AW  +F+
Sbjct:   38 TTDDGKRCLICGCELQDTSARPSATHSDSTRELTHALGATAD-GATPTQDLQALMTRLLSVVGGDLDGAVTHLGSF-VADQASTIEVTIRVQDIKG----EVVAVPANFGPCESISQRD-VVLAEPFDGASAFANAAAMNGKVVVMERGVCTFAQKVLRAQAAGAVAAIIIQTMDVWPYTMTDSKGE---SATIAIPAFMLSAKQGHGFVEFLRARNNETVTMADITVRRDARECVICQVDMAIGMKVTRMPCQHLFHTECLHEWLKIGNSCPICRVEIPAKQSAARGTFVNQTAQQRGDFAWSDWFS 335          
BLAST of mRNA_A-nodosum_M_contig962.18.2 vs. uniprot
Match: A0A6G0XTF6_9STRA (RING-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTF6_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.650e-36
Identity = 94/281 (33.45%), Postives = 143/281 (50.89%), Query Frame = 0
Query:  110 VAREVLAFMAAIERGDLSTAVGLPVPPG---------------VTILENLPGLGARRSTSAPALERVVKNLPRVQVEDDSWVLHQTVLVLRAKGKADLDVDAVFAPFSPPPSEPLIGPIVLAVPSTAHENFQNMGDIKGSVLVVDRGVCTFASKALRADAAGAAAAVIVQTHDVWPYVMEDSMGEVKAAGGLKIPVCMVSREKGEAIKKALREATEGETVRAELSVSSSEKDCIVCQELYAVGSTLVRLPCGHLYHEGCLLKWLKMRNTCPYCRQELPSSN 375
            V +EV+  +A  +R   +    L  PP                V  L  + G+     TS PA +  V  L  +     +      ++V   KG+  L    + A F P  S   I    LA+    H N   +  +K  ++V +RGVCTFASK  RA  AGA A +I+QT DVWPY M DS GE     GL IP  M+S+ +G  + + +++ ++ E   A + V  + ++C++CQ    VG+ +VR+PC H++H  C+ +WLK+RN+CP CR E+P+ N
Sbjct:   12 VCQEVVPVLADDDRRCSACGANLQPPPSAATNAAADETNLTSFVNRLLQVWGIDPENPTSQPAADDAVARL-NMFTAGQATTTEVAMVVRGIKGEVIL----IPADFGPCES---IETCQLALAEPLHGNAPLVASVKDKIVVFERGVCTFASKIQRAQDAGARAVIIIQTFDVWPYTMTDSKGE---GVGLSIPAFMISKSQGHGLLRYIQDHSDAE---ASIDVRKNARECVICQVDVEVGAEVVRMPCQHVFHTECIKQWLKIRNSCPICRVEIPAKN 278          
BLAST of mRNA_A-nodosum_M_contig962.18.2 vs. uniprot
Match: W2Q8Z7_PHYPN (RING-type domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2Q8Z7_PHYPN)

HSP 1 Score: 145 bits (367), Expect = 1.870e-36
Identity = 93/253 (36.76%), Postives = 139/253 (54.94%), Query Frame = 0
Query:  148 GARRSTSAPALERVVKNLPRVQVEDDSWVLHQTVLVLRAKGKADLDVDAVFAPFSPPPSEPLIGPIVLAVPSTAHENFQNMGDIKGSVLVVDRGVCTFASKALRADAAGAAAAVIVQTHDVWPYVMEDSMGEVKAAGGLKIPVCMVSREKGEAIKKALREATEGETVRAELSVSSSEKDCIVCQELYAVGSTLVRLPCGHLYHEGCLLKWLKMRNTCPYCRQELPSSNEEVERERTRREGQE-GSEAWRGFFN 399
            GARR    PA +  V+NL      D +  +   V+V   KG    +V A+   F P  S      +V+A P    + FQN  ++K  ++V+ RG CTFA K LRA AAGAA  +I+QT DVWPY M DS GE K    + IP  M+S + G+   + +R A   E+V A++ V    ++C++CQ   ++G  + R+PC H++H GCL +WL++ N+CP CR E+ +         T +  Q+ G  AW  +F+
Sbjct:  123 GARR----PASDEAVRNLGSFTA-DQASTIEVAVVVEGIKG----EVIAIPGNFGPCESLQKCS-VVIADPFDGAKPFQNANEMKNKIVVMTRGGCTFAQKVLRAQAAGAAGVIIIQTVDVWPYTMTDSTGESK---DVTIPAFMMSAKVGKGFVEFIR-AKRDESVSADIIVRKDARECVICQVEMSIGMKVTRMPCQHMFHTGCLHEWLQIGNSCPICRVEIAAKRTTHNSSSTSQNAQQRGDFAWSEWFS 361          
BLAST of mRNA_A-nodosum_M_contig962.18.2 vs. uniprot
Match: A0A7S2RC44_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RC44_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.350e-36
Identity = 111/296 (37.50%), Postives = 156/296 (52.70%), Query Frame = 0
Query:   94 PPTTQEEGNRTAVGGRVAREVLAFMAAIERGDLSTAVGLPVPPGVTILENLPGLGARRSTSAP-------ALERVVKNLPRVQVEDDSWVLHQ-TVLVLRAKGK--ADLDVDAVFAPFSPPPS--EPLIGPIVLAVPSTAHENFQNMGDIKGSVLVVDRGV-CTFASKALRADAAGAAAAVIVQTHDVWPYVMEDSMGEVKAAGGLKIPVCMVSREKGEAIKKALREATEG-----ETVRAELSVSSSEKDCIVCQELYAVGSTLVRLPCGHLYHEGCLLKWLKMRNTCPYCRQEL 371
            PP     G   AV G  A +     A + R  + T +    P G  + + + G+    +  AP       A     K LPR  V++   VLH+ TVL+    G   A    +A  A F+P P+  E  + P+ +A P TA  +  N  D++    ++ RG   +FA+KALRA+AAGAAAAVIVQ+ +VWPYVM+D  GE  A G L IPV M+ +  G  ++  L+ A EG     + + A++ V +  K+C +CQE +     L R+PCGH+YH  CL  WL  RNTCP CR EL
Sbjct:   56 PPPPPGLGEAAAVPGLGAEDEAG--AGLLRSMVETLMSEQAPDGA-LQDFVDGMMRMSAELAPPQQATRDAASMAAKKLPRFHVDEAQRVLHKATVLLCSENGDPIAGRLYEATVAGFAPLPALAERSL-PLRVAEPRTAATDISN--DLRDYCALLTRGGRVSFATKALRAEAAGAAAAVIVQSEEVWPYVMQDKKGEA-ALGNLGIPVVMIKKSDGAKVEALLQSAREGAARVDQQIFAKIVVHTLGKECPICQEEFHPQEELARMPCGHIYHGACLDTWLSKRNTCPLCRLEL 344          
BLAST of mRNA_A-nodosum_M_contig962.18.2 vs. uniprot
Match: A0A3F2RSJ3_9STRA (RING-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RSJ3_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.080e-35
Identity = 90/254 (35.43%), Postives = 140/254 (55.12%), Query Frame = 0
Query:  148 GARRSTSAPALERVVKNLPRVQVEDDSWVLHQTVLVLRAKGKADLDVDAVFAPFSPPPSEPLIGP-IVLAVPSTAHENFQNMGDIKGSVLVVDRGVCTFASKALRADAAGAAAAVIVQTHDVWPYVMEDSMGEVKAAGGLKIPVCMVSREKGEAIKKALREATEGETVRAELSVSSSEKDCIVCQELYAVGSTLVRLPCGHLYHEGCLLKWLKMRNTCPYCRQELPSSNEEVERERTRREGQE-GSEAWRGFFN 399
            GARR    PA +  V+NL      D +  +   V+V   KG      + + AP +  P E L    +++A P    + FQN  ++ G ++V+ RG CTFA K LRA AAGAA  +I+QT DVWPY M DS GE K    + IP  M+S + G+   + L + ++ E V A++ V    ++C++CQ   ++G  + R+PC H++H  CL +WL++ N+CP CR E+P+         T +  Q+ G  +W  +F+
Sbjct:   97 GARR----PASDEAVENLGSFAA-DQASTIEVAVVVRGIKG------EVIAAPGNFGPCESLKEHNVIVADPFDGAKPFQNASEMSGKIVVMTRGGCTFARKVLRAQAAGAAGVIIIQTVDVWPYTMTDSTGESK---DVTIPAFMMSSKHGKGFVEYLHDKSK-EPVTADIVVRKDARECVICQVEMSIGMKVTRMPCQHMFHTACLHEWLQIGNSCPICRVEIPAKRSAHNSSATSQNAQQRGDFSWGEWFS 335          
BLAST of mRNA_A-nodosum_M_contig962.18.2 vs. uniprot
Match: G4Z1G1_PHYSP (RING-type domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z1G1_PHYSP)

HSP 1 Score: 140 bits (353), Expect = 1.150e-34
Identity = 92/253 (36.36%), Postives = 132/253 (52.17%), Query Frame = 0
Query:  148 GARRSTSAPALERVVKNLPRVQVEDDSWVLHQTVLVLRAKGKADLDVDAVFAPFSPPPSEPLIGPIVLAVPSTAHENFQNMGDIKGSVLVVDRGVCTFASKALRADAAGAAAAVIVQTHDVWPYVMEDSMGEVKAAGGLKIPVCMVSREKGEAIKKALREATEGETVRAELSVSSSEKDCIVCQELYAVGSTLVRLPCGHLYHEGCLLKWLKMRNTCPYCRQELPSSNEEVERERTRREGQE-GSEAWRGFFN 399
            GARR    PA +  VKNL      D +  +   V+V   KG+  + +   F P        L    V+A P    + F+N  D+K  ++V+ RG CTFA K LRA  AG A  VI+QT DVWPY M DS GE K   G+ IP  M+S + G    K LR     E V A++ V    ++C++CQ   ++G  + R+PC H++H  CL +WL++ N+CP CR E+ +         T +  Q+ G  AW  +F+
Sbjct:   99 GARR----PASDEAVKNLGSFAA-DQASTIEVAVVVKGIKGEV-IAIPGNFGPCESLKERKL----VVADPFDGAKPFRNASDMKDKIVVMARGGCTFARKVLRAQDAGVAGVVIIQTVDVWPYTMTDSTGESK---GVTIPAFMMSAKVGNGFVKFLR-GKRDEDVSADIVVRKDARECVICQVEMSIGMKVTRMPCQHMFHTACLHEWLQIGNSCPICRVEIAAKRTAHTSSSTSQNAQQRGDFAWSEWFS 337          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig962.18.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBB9_ECTSI3.740e-13467.30RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YU93_9STRA1.870e-4249.13RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A5D6YB84_9STRA1.990e-3936.73DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]
A0A8K1FJH4_PYTOL2.230e-3837.72Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X027_GLOUD1.030e-3734.74RING-type domain-containing protein n=1 Tax=Globis... [more]
A0A6G0XTF6_9STRA1.650e-3633.45RING-type domain-containing protein n=1 Tax=Aphano... [more]
W2Q8Z7_PHYPN1.870e-3636.76RING-type domain-containing protein n=7 Tax=Phytop... [more]
A0A7S2RC44_9STRA2.350e-3637.50Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A3F2RSJ3_9STRA1.080e-3535.43RING-type domain-containing protein n=3 Tax=Phytop... [more]
G4Z1G1_PHYSP1.150e-3436.36RING-type domain-containing protein n=1 Tax=Phytop... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 327..367
e-value: 5.7E-7
score: 39.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 326..368
e-value: 2.6E-12
score: 46.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 327..368
score: 12.607302
IPR003137PA domainPFAMPF02225PAcoord: 211..301
e-value: 2.4E-12
score: 46.7
NoneNo IPR availableGENE3D3.50.30.30coord: 174..323
e-value: 2.8E-21
score: 78.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..102
NoneNo IPR availablePANTHERPTHR15710E3 UBIQUITIN-PROTEIN LIGASE PRAJAcoord: 322..388
NoneNo IPR availablePANTHERPTHR15710:SF108E3 UBIQUITIN-PROTEIN LIGASE CIP8-LIKE ISOFORM X1coord: 322..388
NoneNo IPR availableSUPERFAMILY52025PA domaincoord: 198..308
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 326..373
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 325..377
e-value: 2.0E-17
score: 64.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig962contigA-nodosum_M_contig962:216382..240212 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig962.18.2mRNA_A-nodosum_M_contig962.18.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig962 215787..240212 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig962.18.2 ID=prot_A-nodosum_M_contig962.18.2|Name=mRNA_A-nodosum_M_contig962.18.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=400bp
MEFDSLAFSAARSHSAPVMEDSVYCPACQEQCVPDKHSTEPTCPTCGGAT
TVRFPLQSSGEVGYLTATPPGNLQAQPDDVDDFDGSGQLREPAPPTTQEE
GNRTAVGGRVAREVLAFMAAIERGDLSTAVGLPVPPGVTILENLPGLGAR
RSTSAPALERVVKNLPRVQVEDDSWVLHQTVLVLRAKGKADLDVDAVFAP
FSPPPSEPLIGPIVLAVPSTAHENFQNMGDIKGSVLVVDRGVCTFASKAL
RADAAGAAAAVIVQTHDVWPYVMEDSMGEVKAAGGLKIPVCMVSREKGEA
IKKALREATEGETVRAELSVSSSEKDCIVCQELYAVGSTLVRLPCGHLYH
EGCLLKWLKMRNTCPYCRQELPSSNEEVERERTRREGQEGSEAWRGFFN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR003137PA_domain
IPR013083Znf_RING/FYVE/PHD