prot_A-nodosum_M_contig962.15.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig962.15.2
Unique Name	prot_A-nodosum_M_contig962.15.2
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	410

Homology

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BLAST of mRNA_A-nodosum_M_contig962.15.2 vs. uniprot
Match: D8LB97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI)

HSP 1 Score: 335 bits (860), Expect = 3.780e-110
Identity = 175/201 (87.06%), Postives = 181/201 (90.05%), Query Frame = 0

Query:    1 MARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYEMDGSRLRVEISRGRRDNGFGMGGGGFRGGMGMXXXXXXXXR----GAA-QMTDYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHRGGGIVHFRTWDDMDYALRKLDGSDFRNPFEKSRINVLPHRGVGGGRDSR 196
            MARIYIGNLPMDVTEKD+DDVFYKFGRIVDIDLKTPARPPAFGF+TFQDARDAEEAVRARDGY+MDGSRLRVEISRGRRD  FGMGGGG  G MGM      XX     GA  Q T+YRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDH+GGGIVHFRT DDMDYALRKLDGSDFRNPFEKSRI+VLPHRGVGGGRDSR
Sbjct:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDP-FGMGGGGHGGRMGMPMGGGRXXXXXXGGAGFQQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISVLPHRGVGGGRDSR 200

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BLAST of mRNA_A-nodosum_M_contig962.15.2 vs. uniprot
Match: A0A835YQ88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ88_9STRA)

HSP 1 Score: 261 bits (667), Expect = 1.080e-81
Identity = 134/193 (69.43%), Postives = 151/193 (78.24%), Query Frame = 0

Query:    1 MARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYEMDGSRLRVEISRGRRDNGFGMGGGGFRGGMGMXXXXXXXXRGAAQMTDYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHRGGGIVHFRTWDDMDYALRKLDGSDFRNPFEKSRINVLPHRGVGGGR 193
            MAR+Y+GNLPM+V EKD++D+FYKFGRI DIDLKTPARPPAF FV F D RDAE+AVRARDGYEMDG RLRVE++RG R                 XXXXX    G  + T++RVIVTGLPPSASWQDLKDHMRKAG+  YTDVDHRGGGIVH+ T DDM+YALRKLD S+FRNPF+ S I VLPHRG  GGR
Sbjct:    1 MARVYVGNLPMNVREKDVEDLFYKFGRIRDIDLKTPARPPAFAFVAFDDVRDAEDAVRARDGYEMDGERLRVELARGARGPPXXX----------XXXXXXGQPMGGGRQTEWRVIVTGLPPSASWQDLKDHMRKAGDVVYTDVDHRGGGIVHYNTRDDMEYALRKLDDSEFRNPFDHSFIRVLPHRGASGGR 183

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BLAST of mRNA_A-nodosum_M_contig962.15.2 vs. uniprot
Match: A0A836CC30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC30_9STRA)

HSP 1 Score: 262 bits (669), Expect = 3.470e-81
Identity = 136/197 (69.04%), Postives = 155/197 (78.68%), Query Frame = 0

Query:    1 MARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYEMDGSRLRVEISRGRRDNGFGM----------GGGGFRGGMGMXXXXXXXXRGAAQMTDYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHRGGGIVHFRTWDDMDYALRKLDGSDFRNPFEKSRINVLPHR 187
            MAR+Y+GNLPM+V EKD++D+FYK+GRI DIDLKTPARPP+F FV F+D RDAE+AV  RDGYEMDG RLRVE++RG R+ GFG           GG GF  G G XXXX     G  Q T++RVIVTGLPPSASWQDLKDHMRKAG+  YTDVDHRGGGIVH+ T  DMDYALRKLD S+FRNPF+KS I VLPHR
Sbjct:    1 MARVYVGNLPMNVREKDVEDLFYKYGRIRDIDLKTPARPPSFAFVAFEDVRDAEDAVSGRDGYEMDGQRLRVELARGARERGFGGXXXXXFDERGGGRGFGAGRGXXXXXGPPMGGGRQ-TEWRVIVTGLPPSASWQDLKDHMRKAGDVVYTDVDHRGGGIVHYATRSDMDYALRKLDDSEFRNPFDKSYIRVLPHR 196

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BLAST of mRNA_A-nodosum_M_contig962.15.2 vs. uniprot
Match: D8LPT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 2.100e-68
Identity = 116/216 (53.70%), Postives = 144/216 (66.67%), Query Frame = 0

Query:    1 MARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYEMDGSRLRVEISRGRRDNGFGMG-----------------------------GGGFRGGMGMXXXXXXXXRGAAQMTDYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHRGGGIVHFRTWDDMDYALRKLDGSDFRNPFEKSRINVLPHR 187
            M+R+YIGNLPMD+ EKD++D+FYK+G+I D+ LK P RPPAFGFVTF+D+RDA+EAVRARDGY+ DG RLRVE+SRG+R+ G G G                             G         X        G  + T+YR +VTGLP SASWQDLKDHMRKAG+  Y DVDH+GGG+VHF   + MDYALRKLDGS+F N ++ + I+VLPHR
Sbjct:   53 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKREFGGGFGXXXXXXXXXXXXXXXXXXXXXXXXYGXXXGXXXXXXXXXXMGPPRGGFGGGRQTEYRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDHKGGGVVHFNNKEGMDYALRKLDGSEFSNRYDTATISVLPHR 268

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BLAST of mRNA_A-nodosum_M_contig962.15.2 vs. uniprot
Match: A0A6H5KN34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN34_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 1.760e-63
Identity = 119/217 (54.84%), Postives = 146/217 (67.28%), Query Frame = 0

Query:    1 MARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYEMDGSRLRVEISRGRRDNGFGMGGGGFRGGMGMXXXXXXXXRGAA----------------------------------QMTDYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHRGGGIVHFRTWDDMDYALRKLDGSDFRNPFEKSRINV 183
            M+R+YIGNLPMD+ EKD++D+FYK+G+I D+ LK P RPPAFGFVTF+D RDA+EAVRARDGY+ DG RLRVE+SRG+R+         F GG G XXXXXXXX G                                    + T+YR +VTGLP SASWQDLKDHMRKAG+  Y DVDH+GGG+VHF   + MDYALRKLDGS+F N ++ + I+V
Sbjct:   61 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKRE---------FGGGFGXXXXXXXXXXGGGGXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXGRQTEYRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDHKGGGVVHFNNREGMDYALRKLDGSEFSNRYDTAIISV 268

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BLAST of mRNA_A-nodosum_M_contig962.15.2 vs. uniprot
Match: A0A7S2B3Q3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3Q3_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.480e-62
Identity = 109/181 (60.22%), Postives = 133/181 (73.48%), Query Frame = 0

Query:    3 RIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYEMDGSRLRVEISRGRRDNGFGMGGGGFRGGMGMXXXXXXXXRGAAQMTDYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHRGGGIVHFRTWDDMDYALRKLDGSDFRNPFEKSRINV 183
            RI++GNLPMD+ E+DI+D+FYK+GR+ DI LKTP+RPPAF F+TF D RDA++AVR RDGY + G RLRVEI RGRR        G  RG  G          GA + +D+RVIVTGLP SASWQDLKDH R+AG+  YTDVD  GGG+V FRT  DM+YAL +LD S FRNPF++S+I V
Sbjct:    8 RIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPPAFAFITFDDRRDADDAVRGRDGYSLGGERLRVEIVRGRR--------GPSRGPAGRPGG------GAGEHSDFRVIVTGLPHSASWQDLKDHFRQAGDVVYTDVDRIGGGLVEFRTLRDMEYALDRLDYSRFRNPFDESKIRV 174

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BLAST of mRNA_A-nodosum_M_contig962.15.2 vs. uniprot
Match: A0A7S0RPW5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RPW5_9CHLO)

HSP 1 Score: 206 bits (525), Expect = 2.610e-61
Identity = 108/189 (57.14%), Postives = 134/189 (70.90%), Query Frame = 0

Query:    2 ARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYEMDGSRLRVEISRGRRDNGFGMGGGGFRGGMGMXXXXXXXXRGAAQMTDYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDV--DHRGG-GIVHFRTWDDMDYALRKLDGSDFRNPFEKSRINVLPHR 187
             R+Y+GNLP+DV E++++D+FYK+GRI  IDLKTP+RPPAF F+ F D RDA++AVR RDGY+  GSR+RVE++ G R        G FRG             G ++ TDYRVIVTGLP SASWQDLKDHMRKAG+ T+T V  D RG  G+V F ++DDM  ALRKLDGS+FRNPF+K  I V   R
Sbjct:    3 TRVYVGNLPIDVREREVEDLFYKYGRIRSIDLKTPSRPPAFAFLEFDDPRDAQDAVRGRDGYDFYGSRIRVELAHGGRGPPGXXXXGSFRGDRPGPSALGPSPFGPSRRTDYRVIVTGLPLSASWQDLKDHMRKAGDVTFTQVMKDGRGNMGLVDFSSYDDMQNALRKLDGSEFRNPFDKCTIKVREDR 191

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BLAST of mRNA_A-nodosum_M_contig962.15.2 vs. uniprot
Match: A0A7R9YPW8_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YPW8_9CHLO)

HSP 1 Score: 205 bits (521), Expect = 1.460e-59
Identity = 127/219 (57.99%), Postives = 150/219 (68.49%), Query Frame = 0

Query:    1 MARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYEMDGSRLRVEISRGRRDNGFGM-GGGGFRGGMGMXXXXXXXXRGA------------------AQMTDYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDV--DHRGG-GIVHFRTWDDMDYALRKLDGSDFRNPFEKSRINVLPHRG-VGGGRDSR 196
            M++IY+GNLP D+ E++++D+FYKFGRIV IDLKTP RPPAF FVTF+D RDAE+A RARDG E  G RLRVEIS G R   FG  GGGGF GG   XXXXXXXX                     ++ T YRVIVTGLPPS SWQDLKDHMR+AG+ T+T V  D RG  G+V +   DDM+ ALRKLD ++FRNPF+ + I V   RG VGGG   R
Sbjct:    1 MSKIYVGNLPGDIREREVEDLFYKFGRIVSIDLKTPPRPPAFSFVTFEDPRDAEDAARARDGMEYAGQRLRVEISHGGRATNFGRAGGGGFDGGRXXXXXXXXXXXXXXXXXXXXXXXXRASQPIQSRGTGYRVIVTGLPPSCSWQDLKDHMRRAGDVTFTQVVRDGRGMVGLVDYAHRDDMEAALRKLDDTEFRNPFDTTFIRVKEDRGDVGGGGXGR 219

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BLAST of mRNA_A-nodosum_M_contig962.15.2 vs. uniprot
Match: A0A7S0I1L9_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I1L9_9CRYP)

HSP 1 Score: 203 bits (516), Expect = 2.880e-59
Identity = 104/188 (55.32%), Postives = 134/188 (71.28%), Query Frame = 0

Query:    1 MARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYEMDGSRLRVEISRGRRDN-GFGMGGGGFRGGMGMXXXXXXXXRGAAQMTDYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHRGGGIVHFRTWDDMDYALRKLDGSDFRNPFEKSRINVLPHR 187
            MARIY+GNLP+D+ E+D+DD+FYK+GRI DI++KTP+RPPAF FV F +  DAE+AVR RDG   +G+RLRVE+SRG     G+   GGG  GG G             + +DYRVI++GLP SASWQDLKD+ R+AGE  YTDVD +GGGIV F   DD DYA++K D ++F NPF++  I V+  R
Sbjct:    1 MARIYVGNLPLDIRERDVDDLFYKYGRIRDIEVKTPSRPPAFAFVEFDNLYDAEDAVRGRDGVMFEGARLRVEMSRGTAATYGYDKRGGG--GGAGKAPPRNL------RRSDYRVIISGLPKSASWQDLKDYFRQAGEIVYTDVDRQGGGIVEFANEDDRDYAIKKFDDTEFSNPFDRGYIRVMKPR 180

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BLAST of mRNA_A-nodosum_M_contig962.15.2 vs. uniprot
Match: A0A699ZIZ3_HAELA (Uncharacterized protein (Fragment) n=2 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZIZ3_HAELA)

HSP 1 Score: 200 bits (509), Expect = 8.500e-59
Identity = 113/207 (54.59%), Postives = 140/207 (67.63%), Query Frame = 0

Query:    2 ARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYEMDGSRLRVEISRGRRD--NGFGMGGGG------------FRGGMGMXXXXXXXXRGAAQMTDYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDV--DHRGG--GIVHFRTWDDMDYALRKLDGSDFRNPFEKSRINVLPHRGVG 190
            +R+Y+GNLP+DV E++IDD+FYK+GRI  IDLKTP+RPPAF F+ ++D RDA +AVR RDGY+  GSR+RVE+S G R   +    GGG             +RGG            G ++ TD+RVIVT LP SASWQDLKDHMRKAG+ T+T V  D RGG  G+V F T DDM  ALRKLD S+FRNPF+K+ I V   RG G
Sbjct:    4 SRVYVGNLPLDVREREIDDLFYKYGRIRGIDLKTPSRPPAFAFIDYEDPRDAADAVRGRDGYDFYGSRIRVELSHGGRGGLSSDRYGGGDXXXXXXXRGRDDYRGGSASAGLGPSPF-GPSRRTDFRVIVTNLPLSASWQDLKDHMRKAGDVTFTQVMKDGRGGNMGLVDFSTMDDMQTALRKLDQSEFRNPFDKTLIRVKEDRGGG 209

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig962.15.2 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig962.15.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LB97_ECTSI	3.780e-110	87.06	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YQ88_9STRA	1.080e-81	69.43	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CC30_9STRA	3.470e-81	69.04	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D8LPT5_ECTSI	2.100e-68	53.70	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KN34_9PHAE	1.760e-63	54.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7S2B3Q3_9STRA	1.480e-62	60.22	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S0RPW5_9CHLO	2.610e-61	57.14	Hypothetical protein (Fragment) n=1 Tax=Chlamydomo...	[more]
A0A7R9YPW8_9CHLO	1.460e-59	57.99	Hypothetical protein n=1 Tax=Chlamydomonas euryale...	[more]
A0A7S0I1L9_9CRYP	2.880e-59	55.32	Hypothetical protein n=1 Tax=Hanusia phi TaxID=303...	[more]
A0A699ZIZ3_HAELA	8.500e-59	54.59	Uncharacterized protein (Fragment) n=2 Tax=Haemato...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 3..73 e-value: 2.8E-21 score: 86.7 coord: 114..182 e-value: 4.4E-5 score: 32.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 115..174 e-value: 5.1E-8 score: 32.6 coord: 4..71 e-value: 5.3E-18 score: 64.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 2..77 score: 18.256838
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 113..188 score: 9.899693
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 112..185 e-value: 7.5E-20 score: 72.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..111 e-value: 1.8E-25 score: 91.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 270..307
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 331..348
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..409
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 349..366
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 367..397
None	No IPR available	PANTHER	PTHR23147:SF194	SERINE/ARGININE-RICH SPLICING FACTOR SR30	coord: 4..267
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 4..267
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..174

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig962	contig	A-nodosum_M_contig962:168592..181839 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig962.15.2	mRNA_A-nodosum_M_contig962.15.2	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig962 168590..184066 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig962.15.2 ID=prot_A-nodosum_M_contig962.15.2|Name=mRNA_A-nodosum_M_contig962.15.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=410bp
MARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDA
RDAEEAVRARDGYEMDGSRLRVEISRGRRDNGFGMGGGGFRGGMGMNMGM
RGGSRGAAQMTDYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHRGGG
IVHFRTWDDMDYALRKLDGSDFRNPFEKSRINVLPHRGVGGGRDSRSRSR
SPKRRRARSPSSSRSRSRSVRRRRGRSRSRSKSRSPSRSRSRTVKRRSTR
SRSRSRSRSRSRSRSRSRSRSRSRTSDVGKKGRRHDKDDEEEEPKREEDE
RRDASPEADGAANGSKAEDGDSDSKADDDDDHRDDEGKGDRMDDAQDDDA
GDREGDGNPDAEDDRDAESDKESKGAGDADGDRDLEGDGDKVALMPEGAA
KDEAVSTEA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf