prot_A-nodosum_M_contig957.16.3 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig957.16.3
Unique Nameprot_A-nodosum_M_contig957.16.3
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length2774
Homology
BLAST of mRNA_A-nodosum_M_contig957.16.3 vs. uniprot
Match: D8LHA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA8_ECTSI)

HSP 1 Score: 473 bits (1217), Expect = 5.770e-132
Identity = 471/1044 (45.11%), Postives = 552/1044 (52.87%), Query Frame = 0
Query: 1025 AEAE-ARKWEECVDEGEAFVTAMLASVVRSLAEGPKTEFELDQSVRSDMDAGRAAAGLPVADWSESHMVNVRLVVDVLIALGLVRSDYNTAEQAGGWPMDVHPPSEAHGGAPAPCFCSSVMRRAVARHTRMSAPSFSAAQSRLPASFAVDPFQLGIPWNPGAGPGGAGGIGGMGFSFRPPAGN------------VAVYGVPGQV-LPTVALPMPGAVAGGTAEVAFLGLGVQGVGGSTWEGTAGGAEAGAGSGVPAKSEKGTRETAGWVEGTAAAAQVFSAAP-------VVEPAPQQITVAQSEPTTAAQFVTAAATPFVPXXXXQSSLXXXXXXXXXXXXXXXXXXXXAPGPAASAAV--------AADEAATASISAPVPREAV---PSSAAITVA---------------------TPPCPPEQPTSLPQTSPLELDKA--------GSFDATVEMSSAPQPAPTTPTTPPPDPRVGVEEALSLTGMTFEGVFSPTEERRKLAPLHNSTN------------------------------ITAANNFGSVCDADXXXXXXXXSSSEAINVAAMELDVLDTPPFSSPPSFELATATAAAAGEPASFGISNATDSDGRINPLAVRSRDVQATVYAKFLLNPADTVILAQENAAASTSTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGDGMNSSPGIPLEVVALGENLSDEAKALAEEGLFDLVSDAWGDETSDRAHTYVEEDALPYLPIDARAFELAVEGKLEPGGELETTYGKPAVEMLHLWLHLKSDIWIKWRDAQGGRGRGRGGSKSGRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPSNAYQEPLQNKSSAGGGSGXGLGLSTDAGIFSAGGAGAVXXXXXGAGDSRPAAPARKLTGRVRSRQGTAVAXXXXXXXXXXXXXXXXXXXXXXXXRGALSYGGRAGGGTAAGPNRVKCVRYRLEGEQDRYLADWEAPARRALQVELETARLALCEEAVLRDLLRRCGISLTPGYARADAINRLRG 1977
            A+AE AR WEECVDEGEAFVTAMLASVVRSLAEGPKTE ELDQSVRSDMDAGRAAAGLPVA+WSESHMVNVRLVVDVLIALGLV+SDYNT EQ+ GWPMDVHPPSE+HGGAPAPCFCSSVMRRA+ARHT+M+ P+  AA   L ASF +DPFQLGIPWNPG+G                                 AVYGVPGQV  P+  +    A+ GG          + G GG+         EAG G+G+P +      E A  V   AAAA  +SAA           P   +     S     A   +A   P V     Q +         XXXXXX          ++S A+         +    T S     PR+AV   PS A  +VA                      P  PP  P     T P   + A        GS  ATV +S+  +               G+ + LSLTG+TFEGVFSP++ER+KLAPL N +                                    N  ++  ++        +++ A N  AMEL V+D                       A  G++    S G                                           XXXXXXXXXXXXX         XXX       ARG G + SPG+PL+VVALGE+LSDEAKALAEEGLFDLV DAWG E S+RAH YVEE+A+P LP+D RAF LAVEG+LEPGGE+ETTYGK AVEMLHLWLHLKSD W++WR+ Q  RG     +     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    + Y      +       G G   S    +  AGG GA       +  +R    +R   G   S+ G          XXXXXXXXXXXXXXXXXX              +    R+K VRYRL+GE DR LA+WE PAR+ALQ+EL+ ARLALCEEAVLRDLLRRCGI+L PGYARADA+N+LRG
Sbjct:  298 AKAEVARTWEECVDEGEAFVTAMLASVVRSLAEGPKTETELDQSVRSDMDAGRAAAGLPVANWSESHMVNVRLVVDVLIALGLVKSDYNTVEQSAGWPMDVHPPSESHGGAPAPCFCSSVMRRAMARHTKMATPAVPAALPSLTASFPIDPFQLGIPWNPGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVYGVPGQVGAPSTVVARAAAMQGGR---------LTGGGGALSPKRE--IEAGGGAGLPGRL---LVEPAAPV---AAAAAAYSAAAWCGHGSTADRPGYSRRAGGLSGAVFGAGSSSAKEGPSVSWQQQQRTGRGETVAAVXXXXXXEALPSMLSPASSSLAIEGTIPGNHGSTTGGTDSSGGDGPRQAVLSGPSPATTSVAWHPSAGVXXXXXXXXXXXHGTIPRAPPPTPLLSTTTPPRTTNTAVSVGGVGVGSGPATVAVSAGWEARSRA--------VEGLPDPLSLTGLTFEGVFSPSQERQKLAPLLNMSGGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLSAIAGSNDTT-----AAAAAGNSTAMELGVVD-----------------------AGSGVNAFARSPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXGSGLGVAASXXXNAAMVVAARGTGASVSPGVPLDVVALGEHLSDEAKALAEEGLFDLVRDAWGSEASERAHCYVEEEAVPSLPVDGRAFALAVEGRLEPGGEVETTYGKAAVEMLHLWLHLKSDNWVRWRETQDRRGAVDPSTAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDNRDGYSAAAITR-------GIGNNASGAQPLRRAGGGGARTPVRRTSSVTRGGNRSRGSAGAAGSKSGKNGGVSSKQKXXXXXXXXXXXXXXXXXXXXXXXXX------ASVVATRIKRVRYRLDGEHDRVLANWEEPARKALQLELDAARLALCEEAVLRDLLRRCGIALPPGYARADAVNKLRG 1274          
BLAST of mRNA_A-nodosum_M_contig957.16.3 vs. uniprot
Match: A0A6H5KYA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA3_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 2.000e-72
Identity = 137/160 (85.62%), Postives = 146/160 (91.25%), Query Frame = 0
Query: 1027 AEARKWEECVDEGEAFVTAMLASVVRSLAEGPKTEFELDQSVRSDMDAGRAAAGLPVADWSESHMVNVRLVVDVLIALGLVRSDYNTAEQAGGWPMDVHPPSEAHGGAPAPCFCSSVMRRAVARHTRMSAPSFSAAQSRLPASFAVDPFQLGIPWNPGAG 1186
            A AR WEECVDEGEAFVTAMLASVVRSLAEGPKTE ELDQSVRSDMDAGRAAAGLPVA+WSESHMVNVRLVVDVLIALGLV+SDYNT EQ+ GWPMDVHPPSE+HGGAPAPCFCSSVMRRA+ARHT+M+ P+  A    L ASF +DPFQLGIPWNPGAG
Sbjct:  457 AVARTWEECVDEGEAFVTAMLASVVRSLAEGPKTETELDQSVRSDMDAGRAAAGLPVANWSESHMVNVRLVVDVLIALGLVKSDYNTVEQSAGWPMDVHPPSESHGGAPAPCFCSSVMRRAMARHTKMATPAVPAVLPSLTASFPIDPFQLGIPWNPGAG 616          
BLAST of mRNA_A-nodosum_M_contig957.16.3 vs. uniprot
Match: A0A6H5LFU5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFU5_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 4.830e-41
Identity = 126/189 (66.67%), Postives = 144/189 (76.19%), Query Frame = 0
Query: 1561 RSRDVQATVYAKFLLNPA---DTVILAQENAAASTSTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGDGMNSSPGIPLEVVALGENLSDEAKALAEEGLFDLVSDAWGDETSDRAHTYVEEDALPYLPIDARAFELAVEGKLEPGGELETTYGKPAVEMLHLWLHLKSDIWIKWRDAQGGRG 1746
            R+RD +A +YA+FL +P    D  + +        +  A  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        SPG PL+VVALGE+LSDEAKALAEEGLFDLV DAWG E S RAH+YVEE+  P LP+D RAF LAVEG+LEPGGE+ETTYGK AVEMLHLWLHLKSD W++WR+ Q  RG
Sbjct:  892 RNRDAKAAMYARFLRDPTGATDAGVCSSSVGGGGVTQQAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPGAPLDVVALGEHLSDEAKALAEEGLFDLVRDAWGGEASARAHSYVEEEVAPSLPVDGRAFALAVEGRLEPGGEVETTYGKAAVEMLHLWLHLKSDNWVRWREMQDRRG 1080          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig957.16.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHA8_ECTSI5.770e-13245.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYA3_9PHAE2.000e-7285.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LFU5_9PHAE4.830e-4166.67Reverse transcriptase domain-containing protein n=... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 2549..2569
NoneNo IPR availableCOILSCoilCoilcoord: 798..951
NoneNo IPR availableCOILSCoilCoilcoord: 984..1035
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 241..292
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 937..971
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1251..1280
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 337..422
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 937..976
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 451..567
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2411..2491
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2457..2472
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 763..808
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2338..2369
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 492..523
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2041..2117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2611..2711
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2411..2430
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2649..2664
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2224..2317
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2674..2688
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1385..1445
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2085..2101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1837..1867
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1745..1812
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2544..2578
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 701..808
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2102..2117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1759..1776
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 832..859
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2522..2591
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 844..859
NoneNo IPR availablePANTHERPTHR19853:SF1TBC1 DOMAIN FAMILY MEMBER 31coord: 800..1377
NoneNo IPR availablePANTHERPTHR19853WD REPEAT CONTAINING PROTEIN 3 WDR3coord: 800..1377

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig957contigA-nodosum_M_contig957:147332..180197 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig957.16.3mRNA_A-nodosum_M_contig957.16.3Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig957 146447..181754 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig957.16.3 ID=prot_A-nodosum_M_contig957.16.3|Name=mRNA_A-nodosum_M_contig957.16.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=2774bp
MTRHKTAAVKVAKAPATCADGEVRQTGRNVHAAAQANGSNAALQVAGETL
QMEAAIGRKKSCGVTGARFTAAIRAAVAETPEPPANGAKVPPIVTPSGGS
GSSNCGSSASVHERQRICGRALESNTNGNRGRSAGGGGINPHEDDLHPRT
RPEHSPTAAVVAVQAVSTPRGPSNSKASPLRVALPIPIASSPRSSSALTR
ARSDSARLREGVPAPSLVAAAPTTSSRTAAAAGVAEEVGIRSKLHPTLPP
AKHDFVRSSTRATTSEQASATNGGDASEINDERGGPATASAKAVANASTS
AGPGQAAALTVSLTAVAAPDDSLVACSTRTHAALANGGDSAGDAGVANQR
GRREGAGRENKRGEQGRGGGGGNHRGGSGGSGRQDGEGGGGGGGGGGDDD
QDGDDGAIVVDAPGGSRQIESLKDIRSRLEQVDALSAKVDNAIRKVKDRL
AAEAEAPDVAVAPNALPPRDTECRRRRVPTARLQQHLEVQRNSRQRGTKK
NDPRLHGEGQQQHQEEFEARESRAGVAPGDSSARAGRGDASPMSVAGKNS
RASGGRPGARKRRRSEVISSSGAVDAVWKGAALTPMVVDAGTNIAVAEGE
AYATAAEPVSAAAAVPFVTPAITAAPAAAVTPPTVTATAVATTLDSAVPE
GGERTPASAVEMTPPVTTATLAVPAIPAAAEASEVEARVAEAIATAARET
TAKEEKSAVTAEQAAAAMPSAGGASPSVGGASSAPSPAAAEAGGAIPMDR
GVPPPLDSKIMEEANSNVVTSSTSGATAPSSSSPVGVAVTTFWDPGTRRQ
QQQQQQRQQRLLQQQRELEQQRELEQQRELELHMQLEQQRQQQQQELEEQ
KRQLEEQERQLREQERQLQEQQQQLQLQEQQQQLQLQLQQQQQQELEQKQ
LEQKQLEQKQLEQKQLEQKQLEQKQLEQKQLEQQQLEQQRQQQQQQQQRE
AGSGAVIGATRTPQTRSSGGGTRAVAADISGRAARAAEIEAAAAAEEAAA
ASQDRARRREQAREQAQAEVEARAAEAEARKWEECVDEGEAFVTAMLASV
VRSLAEGPKTEFELDQSVRSDMDAGRAAAGLPVADWSESHMVNVRLVVDV
LIALGLVRSDYNTAEQAGGWPMDVHPPSEAHGGAPAPCFCSSVMRRAVAR
HTRMSAPSFSAAQSRLPASFAVDPFQLGIPWNPGAGPGGAGGIGGMGFSF
RPPAGNVAVYGVPGQVLPTVALPMPGAVAGGTAEVAFLGLGVQGVGGSTW
EGTAGGAEAGAGSGVPAKSEKGTRETAGWVEGTAAAAQVFSAAPVVEPAP
QQITVAQSEPTTAAQFVTAAATPFVPPAAAQSSLAPTAVVDGAASSSLSS
PPLLAPGPAASAAVAADEAATASISAPVPREAVPSSAAITVATPPCPPEQ
PTSLPQTSPLELDKAGSFDATVEMSSAPQPAPTTPTTPPPDPRVGVEEAL
SLTGMTFEGVFSPTEERRKLAPLHNSTNITAANNFGSVCDADGDGDGDGG
SSSEAINVAAMELDVLDTPPFSSPPSFELATATAAAAGEPASFGISNATD
SDGRINPLAVRSRDVQATVYAKFLLNPADTVILAQENAAASTSTSAPSSS
TPTATLPATVASPGAVTAAAATAAMAMAARGDGMNSSPGIPLEVVALGEN
LSDEAKALAEEGLFDLVSDAWGDETSDRAHTYVEEDALPYLPIDARAFEL
AVEGKLEPGGELETTYGKPAVEMLHLWLHLKSDIWIKWRDAQGGRGRGRG
GSKSGRNGGVASGGGTTTSAVSSTPAFVHNVPPAAYSLPPPPSNAYQEPL
QNKSSAGGGSGGGLGLSTDAGIFSAGGAGAVSGAGSGAGDSRPAAPARKL
TGRVRSRQGTAVAKSGKGAASAGSGTAAAGGAGASKGRGALSYGGRAGGG
TAAGPNRVKCVRYRLEGEQDRYLADWEAPARRALQVELETARLALCEEAV
LRDLLRRCGISLTPGYARADAINRLRGRSTGAGTALGMRGRTGRAAAVVA
KPTAEACQLQPPSFVGGDVLPSSGGFASGLVGHVRGSGAGVGGGSSGGIP
DRVGRPGGKGKGKGIRGGARRQSFSGRPRSKTPKRKKADGSVEDELSSND
DRGSFSDSSQSSHRFYRRSRGSIAESIKIGMFPDGALLPSQRGFTPGLTA
SEAIRLAKKKSNLTATDDCLLVDDVGALGDNGDGVGTGLGAEAGGEDSGA
ALRPSDWTMLTPHIRRPPPLLLGTRGPWHSSVGGDGGSGWNGNGDLGSNG
GPSGGGSEEDSGLFGSWSSTLRGSKKKDRATGAGVDEDGACGEGRAGDGG
GEGVSSRERTASPAEVFRRGMPKAITWSDVTRQFAPISVSDAGGSHPTPS
PLGSRDIGMSRATSFPGPSPSLSPSAVAVAASSEPAAASGGNVVQPSNAA
AAATGGSSSVEALLGSPDNESGNGGVSVASASAGEGTEVAKSAGGTARVG
GGVTSGSGGGGSGSSSSGHHLRISVPGNGGGGGDHLGASGRGGKLERMSN
LASGGAAVIIAPRFWFTAAPMRSMKDRGEGGEGGSEGTSDEDTSDEVFER
RHTEHLAQMKEKIEAARRARELASPRPHPKKRAGSFSGGRCTSKSGTGAG
AAAAAAAAAAVGGSGSSGAVGGEGGFGWGQSGVPPKAGAGRKSSNGRKSR
SSDCSSSSSQRSKGRRGARGGPRTSLTAQPSVPSVDISGTPGTAIGVSLG
PPSGHVPAAATSTVAAEATATSSPPVAVPDTISTAPISTKTTTTSVDATV
PTTVAPGGQSCAAAAAPDGGGGA*
back to top