prot_A-nodosum_M_contig930.15.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig930.15.1
Unique Nameprot_A-nodosum_M_contig930.15.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length111
Homology
BLAST of mRNA_A-nodosum_M_contig930.15.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 6.020e-57
Identity = 84/110 (76.36%), Postives = 96/110 (87.27%), Query Frame = 0
Query:    2 GGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCAD 111
            GGDCDELRIQSTG  D++EVRGHGGS+YF  T+VTSWDTP K PQE Y+ GRSFLNCVSE  + ETC+G+ KND GECRMDII+SEMGY+G+FD+ESYGLTWKVRGFC D
Sbjct:   41 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKD 150          
BLAST of mRNA_A-nodosum_M_contig930.15.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 3.460e-56
Identity = 86/111 (77.48%), Postives = 95/111 (85.59%), Query Frame = 0
Query:    1 IGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCAD 111
            IGGDCDELRIQSTG TDFHEVR HGGS+YFE T+VTSWDTP K+PQ  Y  GRSFLNCVSE  + E C GQ +N+ GECRMDII+SE+GYLG+FDSESYGLTWKVRGFC D
Sbjct:  149 IGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKD 259          
BLAST of mRNA_A-nodosum_M_contig930.15.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 3.160e-54
Identity = 84/118 (71.19%), Postives = 95/118 (80.51%), Query Frame = 0
Query:    2 GGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWK--------VRGFCAD 111
            GGDC++LRIQSTGS DFHEVRGHGGSLYFE T+VTSWDTP K PQE Y+ GRSFLNCVSE  + + CEG  KN+ GECRMDII+SE+ YLG+FDSESYG+TWK        VRGFC D
Sbjct:   62 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKD 179          
BLAST of mRNA_A-nodosum_M_contig930.15.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 6.510e-54
Identity = 84/110 (76.36%), Postives = 96/110 (87.27%), Query Frame = 0
Query:    2 GGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCAD 111
            GGDC++LRIQSTGS DFHEVRGHGGSLYFE T+VTSWDTP K PQE Y++GRSFLNCVSE  + + CEG  KN+ GECRMDII+SE+ YLG+FDSESYG+TWKVRGFC D
Sbjct:  513 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKD 622          
BLAST of mRNA_A-nodosum_M_contig930.15.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.950e-53
Identity = 85/119 (71.43%), Postives = 95/119 (79.83%), Query Frame = 0
Query:    2 GGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVR---------GFCAD 111
            GGDCDELRIQSTG  D++EVRGHGGS+YF  T+VTSWDTP K PQE Y+ GRSFLNCVSE  + ETC+G  KND GECRMDII+SEMGY+G+FDSESYGLTWKVR         GFC D
Sbjct:   86 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKD 204          
BLAST of mRNA_A-nodosum_M_contig930.15.1 vs. uniprot
Match: D7FZV0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV0_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 2.630e-47
Identity = 72/112 (64.29%), Postives = 88/112 (78.57%), Query Frame = 0
Query:    1 IGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEY-ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCAD 111
            +GG+C ELRI+ST  +DF E+RGHGG+LYFE T+VTSWD   + PQE YK GRSF+ CVSE    ++TC     N+ GECRMDIIDSEMGYLG+  SE+YG+TWKVRGFC+D
Sbjct:    3 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKGGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 111          
BLAST of mRNA_A-nodosum_M_contig930.15.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 1.420e-44
Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = 0
Query:    1 IGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEY-ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCAD 111
            +GG+C ELRI+ST  +DF E+RGHGG+LYFE T+VTSWD   + PQE YKDGRSF+ CVSE    ++TC     N+ GECRMDIIDSEMGYLG+  SE+YG+TWKVRGFC+D
Sbjct:   74 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 182          
BLAST of mRNA_A-nodosum_M_contig930.15.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 2.900e-39
Identity = 70/112 (62.50%), Postives = 80/112 (71.43%), Query Frame = 0
Query:    2 GGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEY--ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCAD 111
            GGD DELR+ ST  T F  +R HGGSL F  T V SWDT   SP ED  DGRS+++ +SE   + DETCEG  KN  GE RMDI  SE+GYLG++DSESYGLTWKVRGFC D
Sbjct:   19 GGDADELRLLSTSET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCED 129          
BLAST of mRNA_A-nodosum_M_contig930.15.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 5.270e-38
Identity = 70/112 (62.50%), Postives = 80/112 (71.43%), Query Frame = 0
Query:    2 GGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEY--ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCAD 111
            GGD DELR+ ST  T F  +R HGGSL F  T V SWDT   SP ED  DGRS+++ +SE   + DETCEG  KN  GE RMDI  SE+GYLG++DSESYGLTWKVRGFC D
Sbjct:  125 GGDADELRLLSTNET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCED 235          
BLAST of mRNA_A-nodosum_M_contig930.15.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 8.830e-38
Identity = 67/112 (59.82%), Postives = 84/112 (75.00%), Query Frame = 0
Query:    2 GGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEYESDE--TCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCAD 111
            GGD D LRIQST   DF E+RG GGSL F +T VTSWDT K   + +Y+ GRSF+NCV++++  +  +C G+   + GECRMDIIDS MG +GWFD+ESYGLTWKVRG C+D
Sbjct:  476 GGDADVLRIQST-DDDFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSD 586          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig930.15.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIU4_ECTSI6.020e-5776.36Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LRM4_ECTSI3.460e-5677.48Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
A0A6H5KWQ2_9PHAE3.160e-5471.19MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LC73_ECTSI6.510e-5476.36Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5JGU8_9PHAE1.950e-5371.43MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FZV0_ECTSI2.630e-4764.29Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FRR8_ECTSI1.420e-4465.18Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KES9_9PHAE2.900e-3962.50MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
D7FXE5_ECTSI5.270e-3862.50Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FWE8_ECTSI8.830e-3859.82Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 1..110
e-value: 1.1E-21
score: 79.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig930contigA-nodosum_M_contig930:273892..274224 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig930.15.1mRNA_A-nodosum_M_contig930.15.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig930 273892..274224 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig930.15.1 ID=prot_A-nodosum_M_contig930.15.1|Name=mRNA_A-nodosum_M_contig930.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=111bp
IGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYK
DGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYG
LTWKVRGFCAD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold