prot_A-nodosum_M_contig93.48.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig93.48.1
Unique Nameprot_A-nodosum_M_contig93.48.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length294
Homology
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BLAST of mRNA_A-nodosum_M_contig93.48.1 vs. uniprot
Match: D7G5P7_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5P7_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 2.070e-51
Identity = 104/204 (50.98%), Postives = 131/204 (64.22%), Query Frame = 0 
Query:   50 RRLDTCEA---CMVNEEDQDALDRDNREIFCEPSCEN-GNATLGGLWCNYLGKDGCRAC-TFNCDDTTGEGCVLCEGDPP---TPVPTSTPVEGATRAPVEAGASIPPDAIDKESCTAARCLERATDDDLSYFEENDLTLFCDNKCFDTSSDPRGGLLCNMRGLGQPCRAC-ADNCDD-RGDDGCVACDEVQTPVPSITTPAPS 243
            RRLD C +   C  ++ D +ALD + + IFC+P+CE+ G    GG WCN+ G +GCRAC  +NC+ ++G  CV C G+ P   TP P     EG T AP+  G + PP  ID  SCTAA C + A   DLSY ++N LTL+CD+KC DT SDP GGL CNMRGLGQ CRAC ADNC     DD C+ C+E+Q  +P   TPAPS
Sbjct:   38 RRLDACSSDSDCQGSDADMEALDNEGKTIFCDPACEDTGTDIFGGTWCNHFGLEGCRACDVYNCEGSSG-ACVPCNGELPEETTPAPQE---EGLTLAPISPGETDPPFPIDASSCTAAACEDNADSADLSYIDDNSLTLYCDDKCSDTPSDPFGGLWCNMRGLGQLCRACRADNCVGWTEDDTCLPCNELQETLPPSVTPAPS 237
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig93.48.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5P7_ECTSI2.070e-5150.98Similar to Mucin-1 (MUC-1) (Polymorphic epithelial... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig93contigA-nodosum_M_contig93:424066..453474 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig93.48.1mRNA_A-nodosum_M_contig93.48.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig93 424037..454049 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig93.48.1 ID=prot_A-nodosum_M_contig93.48.1|Name=mRNA_A-nodosum_M_contig93.48.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=294bp
MLLGTAVVAAMSISGTGFASARIVGMQQAVSDSGVGRSREDGEIKRMKPR
RLDTCEACMVNEEDQDALDRDNREIFCEPSCENGNATLGGLWCNYLGKDG
CRACTFNCDDTTGEGCVLCEGDPPTPVPTSTPVEGATRAPVEAGASIPPD
AIDKESCTAARCLERATDDDLSYFEENDLTLFCDNKCFDTSSDPRGGLLC
NMRGLGQPCRACADNCDDRGDDGCVACDEVQTPVPSITTPAPSQPPETLA
PSDMVPTPVPSEIAPTGVPIATEAPMVTPTYWLPWLRQKQPRL*
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