prot_A-nodosum_M_contig9214.4.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9214.4.1
Unique Nameprot_A-nodosum_M_contig9214.4.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length291
Homology
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BLAST of mRNA_A-nodosum_M_contig9214.4.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 6.650e-11
Identity = 48/152 (31.58%), Postives = 72/152 (47.37%), Query Frame = 0 
Query:    1 MERLVASCHAIGHVVMDTCWRGGACFVGHQASIDAAGGSFALSVQLTRCATLNKPTAGTLVVQAFGPRDRRAVWGALRFVISSAWHLFEEFPRLGWEAWVECPKHHGQVLHYLAGVSDSKGRSPGDPIVPSSARLFCGCPQGASSRLGTVLR 152
            +ER++ASCHA+G V M  CWR GA F     ++  + GS  L   + R  +        L ++ FGP     VW ALR+V SS  ++ +++P + WE W +C + H    ++      S G          + R  C C     +  GTVLR
Sbjct:  679 VERVIASCHAVGVVEMGLCWRYGAVF--QSRAMATSDGSDRLYTFVVRYDSAVGNERRILSMRMFGPLQDNRVWAALRWVASSVVNISKDWPGVLWEGWPQCARRHRNRTYFATSDKASIGDFLLADAATGATRRGCDC----LAVEGTVLR 824
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9214.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JW02_9PHAE6.650e-1131.58Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9214contigA-nodosum_M_contig9214:16452..18664 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9214.4.1mRNA_A-nodosum_M_contig9214.4.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9214 16062..18744 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9214.4.1 ID=prot_A-nodosum_M_contig9214.4.1|Name=mRNA_A-nodosum_M_contig9214.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=291bp
MERLVASCHAIGHVVMDTCWRGGACFVGHQASIDAAGGSFALSVQLTRCA
TLNKPTAGTLVVQAFGPRDRRAVWGALRFVISSAWHLFEEFPRLGWEAWV
ECPKHHGQVLHYLAGVSDSKGRSPGDPIVPSSARLFCGCPQGASSRLGTV
LRTQSVWGPCPLTEVFKGVGGGGQGGRSSDEDGEKHFTAALDSVLNAKNE
AAESEGWRTPEWVKDAAVAGPTGALLLYEAWSPLLNIVDCWREGLLGQAI
PLTIFVAVLAVAVIGAVAVVFRKLRFKFRVWPPRTDTKND*
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