prot_A-nodosum_M_contig92.36.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig92.36.1
Unique Name	prot_A-nodosum_M_contig92.36.1
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	480

Homology

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BLAST of mRNA_A-nodosum_M_contig92.36.1 vs. uniprot
Match: D8LB95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB95_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 2.390e-65
Identity = 151/239 (63.18%), Postives = 174/239 (72.80%), Query Frame = 0

Query:  198 DGSPKEL-EPSKVLHVRNVGYPVVQSDLVSLLSCFGQVEKVKMFSAQALVQLPSVSIAKATMQHFAQDEAARIGNKKVYINFSRSRSIEGRDIEPLNSTSSNSXXXXXXXXXXXXXXXXXXXXXXXXITNASSNGLAAART----------GAGSDGNGHVDAAGPYAHLIIEDHAKLLGLATTYLQSYGIPGGEGAVLNINQREDMAEYQRQALATAMVLNGGTGTA----GITTWSG 421
            DGSP++  EPSKVLHVRNVGYPVVQ DLV+LLSCFGQVEK+KMFS QALVQLPSVS+AKATM+H+ +D   +IG K+VY+N+SRSRSIE RD E L   ++    XXXXXXXXXXXXXXXXX       N  +NGL  AR             GS GN   +   PYAHLI+EDHAKLLGLAT YLQ+YGIPGGEGA+LNINQRE+MAE QRQA+A A  L G  G A    G+  W+G
Sbjct:  217 DGSPRQTPEPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMFSGQALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIETRDGESLAVGATAGGGXXXXXXXXXXXXXXXXXN-----VNGGNNGLDLARAINAARGVGGMDGGSTGNPMQETPSPYAHLIMEDHAKLLGLATCYLQTYGIPGGEGAILNINQREEMAERQRQAMAAAFALTGANGHALHHAGMGAWNG 450

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BLAST of mRNA_A-nodosum_M_contig92.36.1 vs. uniprot
Match: A0A1R3L5K1_ASPOF (Uncharacterized protein n=3 Tax=Asparagus officinalis TaxID=4686 RepID=A0A1R3L5K1_ASPOF)

HSP 1 Score: 67.0 bits (162), Expect = 3.010e-8
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 0

Query:  205 EPSKVLHVRNVGYPVVQSDLVSLLSCFGQVEKVKMFSA--QALVQLPSVSIAKATMQHFAQDEAARIGNKKVYINFSRSRSIEGRD 288
            EPSKV+HVRNVG+ + +SDL+ LL  FG V KV M  A  QAL+Q+  VS A A MQ++A  + + +  + VY+ FS  + +   D
Sbjct:    3 EPSKVIHVRNVGHEIAESDLLQLLQPFGTVTKVVMLRAKNQALLQMYDVSSAAAAMQYYANVQPS-VRGRNVYMQFSSHQELTTMD 87

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BLAST of mRNA_A-nodosum_M_contig92.36.1 vs. uniprot
Match: A0A6P9EPX6_JUGRE (polypyrimidine tract-binding protein homolog 3-like isoform X2 n=12 Tax=Fagales TaxID=3502 RepID=A0A6P9EPX6_JUGRE)

HSP 1 Score: 63.9 bits (154), Expect = 2.900e-7
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 0

Query:  205 EPSKVLHVRNVGYPVVQSDLVSLLSCFGQVEKVKMFSA--QALVQLPSVSIAKATMQHFAQDEAARIGNKKVYINFSRSRSIEGRDIEP 291
            EPSKVLHVRNVGY + ++DL+ L+  FG V K  M  A  QAL+Q+  V  A   MQ++A  + + +  + VYI FS  + +   D  P
Sbjct:    3 EPSKVLHVRNVGYEITENDLLQLVQPFGVVTKSVMLRAKNQALIQMQDVGSAVNVMQYYANIQPS-VRGRNVYIQFSSHQELTTVDQNP 90

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BLAST of mRNA_A-nodosum_M_contig92.36.1 vs. uniprot
Match: A0A444XTH1_ARAHY (RRM domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444XTH1_ARAHY)

HSP 1 Score: 59.7 bits (143), Expect = 3.420e-7
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 0

Query:  205 EPSKVLHVRNVGYPVVQSDLVSLLSCFGQVEKVKMFSA--QALVQLPSVSIAKATMQHFAQDEAARIGNKKVYINFSRSRSIEGRD 288
            EPSKV+HVRNVG+ + ++DL+ L   FG + K+ M  A  QALVQ+  V+ A  ++Q +A  + + I  + VY+ FS  + +   D
Sbjct:   41 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALVQMQDVASAVNSLQFYANVQPS-IRGRNVYVQFSSHQELTSMD 125

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BLAST of mRNA_A-nodosum_M_contig92.36.1 vs. uniprot
Match: UPI00126323E9 (polypyrimidine tract-binding protein homolog 3-like n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI00126323E9)

HSP 1 Score: 60.1 bits (144), Expect = 4.980e-7
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 0

Query:  205 EPSKVLHVRNVGYPVVQSDLVSLLSCFGQVEKVKMFSA--QALVQLPSVSIAKATMQHFAQDEAARIGNKKVYINFSRSRSI-------EGRDIEP 291
            EPSKV+HVRNVG+ + ++DL+ L   FG + K+ M  A  QAL+Q+  V  A A +Q++A  + + I  + VY+ FS  + +       +GR  EP
Sbjct:    3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAIAALQYYANVQPS-IRGRNVYVQFSSHQELTTMDQNTQGRGDEP 97

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BLAST of mRNA_A-nodosum_M_contig92.36.1 vs. uniprot
Match: A0A7J7MSH2_9MAGN (RRM domain-containing protein (Fragment) n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MSH2_9MAGN)

HSP 1 Score: 58.9 bits (141), Expect = 6.200e-7
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0

Query:  205 EPSKVLHVRNVGYPVVQSDLVSLLSCFGQVEKVKMFSA--QALVQLPSVSIAKATMQHFAQDEAARIGNKKVYINFSRSRSIEGRDIEP 291
            EPSKV+HVRNVG  + ++DL+ L+  FG V K+ M  A  QAL+Q+  V+ A   +Q++A  + + I  + VYI FS  + +   +  P
Sbjct:   38 EPSKVIHVRNVGQEIAENDLLQLVQPFGVVTKLVMLRAKNQALLQMHDVASAVNALQYYANVQPS-IRGRNVYIQFSSHQELTTMEQNP 125

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BLAST of mRNA_A-nodosum_M_contig92.36.1 vs. uniprot
Match: A0A6A4NFR8_LUPAL (Putative RNA recognition motif domain-containing protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4NFR8_LUPAL)

HSP 1 Score: 60.8 bits (146), Expect = 9.280e-7
Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 0

Query:  205 EPSKVLHVRNVGYPVVQSDLVSLLSCFGQVEKVKMFSA--QALVQLPSVSIAKATMQHFAQDEAARIGNKKVYINFSRSRSI------EGRDIEP 291
            EPSKV+HVRNVG+ + ++DL+ L   FG + K+ M  A  QAL+Q+  +S A   +Q++A  + + I  + VY+ FS  + +      +GR+ EP
Sbjct:    3 EPSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDISSAVNALQYYANVQPS-IRGRNVYVQFSSHQELTTMDQNQGREDEP 96

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BLAST of mRNA_A-nodosum_M_contig92.36.1 vs. uniprot
Match: A0A6P3ZE48_ZIZJJ (polypyrimidine tract-binding protein homolog 3-like n=3 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3ZE48_ZIZJJ)

HSP 1 Score: 58.9 bits (141), Expect = 9.690e-7
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 0

Query:  205 EPSKVLHVRNVGYPVVQSDLVSLLSCFGQVEKVKMFSA--QALVQLPSVSIAKATMQHFAQDEAARIGNKKVYINFSRSRSI-------EGRDIEP 291
            EPSKV+HVRNVG+ + ++DL+ L   FG + K+ M  A  QAL+Q+  V  A   +Q +A  + A I  + VY+ FS  + +       +GR  EP
Sbjct:    3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQFYANVQPA-IRGRNVYVQFSSHQELTTMDQNAQGRGDEP 97

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BLAST of mRNA_A-nodosum_M_contig92.36.1 vs. uniprot
Match: A0A2Z6NYT8_TRISU (RRM domain-containing protein (Fragment) n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NYT8_TRISU)

HSP 1 Score: 60.5 bits (145), Expect = 1.510e-6
Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = 0

Query:  205 EPSKVLHVRNVGYPVVQSDLVSLLSCFGQVEKVKMFSA--QALVQLPSVSIAKATMQHFAQDEAARIGNKKVYINFSRSRSI-------EGRDIEP 291
            EPSKV+HVRNVG+ + ++DL+ L   FG + K+ +  A  QAL+Q+  +  A + +Q++A  +   I  + VY+ FS  R +       +GR+ EP
Sbjct:    3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVVLRAKNQALLQMQDIPSAVSAIQYYANSQP-NIRGRNVYVQFSSHRELTTMDQQSQGREDEP 97

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BLAST of mRNA_A-nodosum_M_contig92.36.1 vs. uniprot
Match: A0A7I4ASA3_PHYPA (RRM domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4ASA3_PHYPA)

HSP 1 Score: 60.5 bits (145), Expect = 2.060e-6
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 0

Query:  202 KELEPSKVLHVRNVGYPVVQSDLVSLLSCFGQVEKVKMFSA--QALVQLPSVSIAKATMQHFAQDEAARIGNKKVYINFSRSRSIEGRD 288
            K  EPSKVLH+RNVG  V +SDL+ L   FG V+KV M  A  QAL+Q+  V  A   MQ++   + + +  + VY+ FS  + +   D
Sbjct:   16 KMTEPSKVLHIRNVGPEVAESDLLQLAQSFGVVQKVVMLRAKNQALLQMQDVPSAINVMQYYTTVQPS-VRGRNVYMQFSSHKELTTPD 103

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig92.36.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig92.36.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LB95_ECTSI	2.390e-65	63.18	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A1R3L5K1_ASPOF	3.010e-8	45.35	Uncharacterized protein n=3 Tax=Asparagus officina...	[more]
A0A6P9EPX6_JUGRE	2.900e-7	42.70	polypyrimidine tract-binding protein homolog 3-lik...	[more]
A0A444XTH1_ARAHY	3.420e-7	39.53	RRM domain-containing protein n=1 Tax=Arachis hypo...	[more]
UPI00126323E9	4.980e-7	38.54	polypyrimidine tract-binding protein homolog 3-lik...	[more]
A0A7J7MSH2_9MAGN	6.200e-7	39.33	RRM domain-containing protein (Fragment) n=1 Tax=K...	[more]
A0A6A4NFR8_LUPAL	9.280e-7	37.89	Putative RNA recognition motif domain-containing p...	[more]
A0A6P3ZE48_ZIZJJ	9.690e-7	38.54	polypyrimidine tract-binding protein homolog 3-lik...	[more]
A0A2Z6NYT8_TRISU	1.510e-6	36.46	RRM domain-containing protein (Fragment) n=1 Tax=T...	[more]
A0A7I4ASA3_PHYPA	2.060e-6	41.57	RRM domain-containing protein n=1 Tax=Physcomitriu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 195..288 e-value: 3.6E-13 score: 51.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 287..322
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 427..479
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 288..322
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 427..453
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..85
None	No IPR available	PANTHER	PTHR23189:SF79	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN L2	coord: 196..294
None	No IPR available	PANTHER	PTHR23189	RNA RECOGNITION MOTIF-CONTAINING	coord: 196..294
None	No IPR available	CDD	cd12421	RRM1_PTBP1_hnRNPL_like	coord: 209..281 e-value: 1.82619E-20 score: 83.4001
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 208..281 score: 9.063978
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 196..284

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig92	contig	A-nodosum_M_contig92:498285..531769 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig92.36.1	mRNA_A-nodosum_M_contig92.36.1	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig92 487426..532102 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig92.36.1 ID=prot_A-nodosum_M_contig92.36.1|Name=mRNA_A-nodosum_M_contig92.36.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=480bp
MTAIATSPEGMDIAGDGNSILSRRVGQVKRENGLDDDVAGVLEQDLPHVS
YSVNPDPRLRGMVTSTPAEDDVDPPSRRHTHEVGGGGPRDTSGSEEGYEY
RTERDAGSSRAGSNESIDSGLDRRTRQRRDVGSSASSSRRHGDRSRDCRH
RYGNGFSNDSATPRSDRGGTGGGRGDAGTGRGSDMRAEMPPRRRAGGDGS
PKELEPSKVLHVRNVGYPVVQSDLVSLLSCFGQVEKVKMFSAQALVQLPS
VSIAKATMQHFAQDEAARIGNKKVYINFSRSRSIEGRDIEPLNSTSSNSR
SNNNSNNNGNNSSSSNSYGGGGGITNASSNGLAAARTGAGSDGNGHVDAA
GPYAHLIIEDHAKLLGLATTYLQSYGIPGGEGAVLNINQREDMAEYQRQA
LATAMVLNGGTGTAGITTWSGSSSTTATGGSRFATGVSASGSHTAFNPRP
RSGSRSQPDDEMYRQPPRNRGGRGGPSQR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR035979	RBD_domain_sf