prot_A-nodosum_M_contig918.9.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig918.9.1
Unique Nameprot_A-nodosum_M_contig918.9.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length100
Homology
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BLAST of mRNA_A-nodosum_M_contig918.9.1 vs. uniprot
Match: A0A6H5K0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D2_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.950e-48
Identity = 75/99 (75.76%), Postives = 84/99 (84.85%), Query Frame = 0 
Query:    1 MAFRMTGRVLGALQKERNDIQPALRKVWKTYEHTDGLVMRTISPYHLNPFGSFVQSIPKKLKHRFIEHGVEVFMCGAIVYGTYTAHKKGFDQLHKDHRD 99
            MAFRMTGRVLGA+ +ERND+QPALRKVWK YE  DGLV+R+ISPY LN   +FV +IPKKLK RFIE+G EV MC  IVYGTYT+HKKGF QLHKDHRD
Sbjct:    1 MAFRMTGRVLGAVARERNDVQPALRKVWKAYEPVDGLVIRSISPYQLNLVRNFVTTIPKKLKTRFIEYGPEVMMCVGIVYGTYTSHKKGFAQLHKDHRD 99
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BLAST of mRNA_A-nodosum_M_contig918.9.1 vs. uniprot
Match: D7G6P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P4_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 6.650e-13
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0 
Query:    1 MAFRMTGRVLGALQKERNDIQPALRKVWKTYEHTDGLVMR 40
            MAFRMTGRVLGA+ +ERND+QPALRKVWK +E  DGLV R
Sbjct:    1 MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVSR 40
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BLAST of mRNA_A-nodosum_M_contig918.9.1 vs. uniprot
Match: A0A7S2CT33_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CT33_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.890e-8
Identity = 28/83 (33.73%), Postives = 43/83 (51.81%), Query Frame = 0 
Query:   17 RNDIQPALRKVWKTYEHTDGLVMRTISPYHLNPFGSFVQSIPKKLKHRFIEHGVEVFMCGAIVYGTYTAHKKGFDQLHKDHRD 99
            R D+ P L K+WKT++HTDG V+R +SPY       +   +PK++  R  E   ++    A +YG     K  +  +   HRD
Sbjct:   16 RYDVSPHLVKLWKTHKHTDGQVIRQLSPYEQKVIQPWAGHLPKEIIWRVTEGAWDILPALAALYGVVAWGKWYYADICHHHRD 98
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig918.9.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K0D2_9PHAE1.950e-4875.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6P4_ECTSI6.650e-1377.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CT33_9STRA4.890e-833.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036642Cytochrome b-c1 complex subunit 8 superfamilyGENE3D1.20.5.210coord: 25..99
e-value: 2.0E-6
score: 29.8
IPR020101Cytochrome b-c1 complex subunit 8, plantsPFAMPF10890Cyt_b-c1_8coord: 38..98
e-value: 2.6E-5
score: 24.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig918contigA-nodosum_M_contig918:86154..98334 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig918.9.1mRNA_A-nodosum_M_contig918.9.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig918 86154..98334 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig918.9.1 ID=prot_A-nodosum_M_contig918.9.1|Name=mRNA_A-nodosum_M_contig918.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=100bp
MAFRMTGRVLGALQKERNDIQPALRKVWKTYEHTDGLVMRTISPYHLNPF
GSFVQSIPKKLKHRFIEHGVEVFMCGAIVYGTYTAHKKGFDQLHKDHRD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036642Cyt_bc1_su8_sf
IPR020101Cyt_b-c1_8-plants