prot_A-nodosum_M_contig91.71.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig91.71.1
Unique Name	prot_A-nodosum_M_contig91.71.1
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	525

Homology

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BLAST of mRNA_A-nodosum_M_contig91.71.1 vs. uniprot
Match: D8LCH8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH8_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 4.570e-38
Identity = 102/242 (42.15%), Postives = 130/242 (53.72%), Query Frame = 0

Query:  138 HLAPSDAGNTVQ--DKATSRRLFH---PDGLQSR-SWPRSRRGFTSPAPVRRAASARPPAPAEVRPRPDRVENFHHALDNEVVHQAFGEFCRRTLSSENVEFVRQVRDLDGLSSAKGTTAKQLRDKLCFIADTFLGTESDTEVNVRGSFREDALCAIEAALDASKNN------------CRGDGRGEG-----PWAWVLATAATDALVHLARDVHPLILDGLWPRFLVSDEFKRMMNTKEMR 356
            HLA + A N +   D  T   +F    P G+ S  SWP++     S      +AS           R  R ENFH A+DN +V+ AF  FC + LSSENVEFV QVR+++ L   + TTA  LR+KL  +A  F+   S TEVNV+GS R  ALCAI AAL+A+ ++             RG    E        AW LA  A +AL  LA +VH +I DGLWPRFLVS+EF  MMN +  R
Sbjct:   37 HLAANTAANVINHDDPTTYNNIFENSPPRGVFSAASWPKAAAAAGS------SASGSNQCGGRSSHRGRREENFHAAMDNRLVYMAFSSFCNKNLSSENVEFVLQVREVNQLLEMEETTAGDLREKLRQVAVAFVNPNSATEVNVKGSTRASALCAIGAALEAAGHDGCXXXXXXXXXXXRGSAGKESCCPGTSCAWALAEEAIEALARLAEEVHSVIFDGLWPRFLVSEEFHAMMNIERRR 272

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig91.71.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig91.71.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LCH8_ECTSI	4.570e-38	42.15	RGS domain-containing protein n=1 Tax=Ectocarpus s...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016137	RGS domain	SMART	SM00315	RGS_3	coord: 204..350 e-value: 0.0059 score: 18.9
IPR016137	RGS domain	PFAM	PF00615	RGS	coord: 205..349 e-value: 2.0E-7 score: 31.3
IPR016137	RGS domain	PROSITE	PS50132	RGS	coord: 204..350 score: 14.513694
IPR044926	RGS, subdomain 2	GENE3D	1.10.167.10		coord: 190..355 e-value: 5.2E-14 score: 54.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 483..506
IPR036305	RGS domain superfamily	SUPERFAMILY	48097	Regulator of G-protein signaling, RGS	coord: 197..352

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig91	contig	A-nodosum_M_contig91:922387..947270 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig91.71.1	mRNA_A-nodosum_M_contig91.71.1	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig91 922133..950035 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig91.71.1 ID=prot_A-nodosum_M_contig91.71.1|Name=mRNA_A-nodosum_M_contig91.71.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=525bp
MLPPQEEKTPGLSTSTSLVSSRPWSMRSEILGSAGDVRHEESTGGVDGAG
ESTVVSVSPLVGAPVGFFLDGATTNVKIDEILKNQLQPEEEQNCAPSTVY
KQQPRSGRYKRRAVLLGRVRRLLSHPRAASRPESVKPHLAPSDAGNTVQD
KATSRRLFHPDGLQSRSWPRSRRGFTSPAPVRRAASARPPAPAEVRPRPD
RVENFHHALDNEVVHQAFGEFCRRTLSSENVEFVRQVRDLDGLSSAKGTT
AKQLRDKLCFIADTFLGTESDTEVNVRGSFREDALCAIEAALDASKNNCR
GDGRGEGPWAWVLATAATDALVHLARDVHPLILDGLWPRFLVSDEFKRMM
NTKEMRTTGFTDLDGRIIVNSEPSHRSHKAWTMKRELASAFSWRASRDIS
EAFPERSESTSTCGGLDAMEAAQASSDLTSTTQPPVTRRRCVSSFRGPAV
FYGRQQQQEQQQQEQQRAVARVGRGGNAFGGLPNWSGAGSMKKDTDRPSS
AINSPTRCIRGIRQSASRRALSWR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016137	RGS
IPR044926	RGS_subdomain_2
IPR036305	RGS_sf