prot_A-nodosum_M_contig897.13.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig897.13.1
Unique Nameprot_A-nodosum_M_contig897.13.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length111
Homology
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BLAST of mRNA_A-nodosum_M_contig897.13.1 vs. uniprot
Match: A0A6H5K2N6_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N6_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.960e-28
Identity = 65/99 (65.66%), Postives = 81/99 (81.82%), Query Frame = 0 
Query:   13 ETAAATAEASMVAPRLLPVLETPLTIQESFAAEMARVEAELNSKLEMARAELSRNTEAYKQYRARAHTAIKNSGASQREAEARITQAHRELATERELVR 111
            +T    A+A +    +LPVLETP+T+Q+SF AE++RV  +L +KLE ARAEL+RNTEAYKQYRARAHTAIKNSGASQR+ EARI QAH+ELA E+E +R
Sbjct: 2711 DTTVVNAQAPVAVAPVLPVLETPMTLQQSFGAELSRVRGDLEAKLEEARAELTRNTEAYKQYRARAHTAIKNSGASQRDTEARIAQAHKELAAEQEAMR 2809
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BLAST of mRNA_A-nodosum_M_contig897.13.1 vs. uniprot
Match: D8LEJ5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ5_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 9.240e-28
Identity = 64/96 (66.67%), Postives = 79/96 (82.29%), Query Frame = 0 
Query:   16 AATAEASMVAPRLLPVLETPLTIQESFAAEMARVEAELNSKLEMARAELSRNTEAYKQYRARAHTAIKNSGASQREAEARITQAHRELATERELVR 111
            A  A+A +    +LPVLETP+T+Q+SF AE++RV  +L  KLE ARAEL+RNTEAYKQYRARAHTAIKNSGASQR+ EARI QAH+EL+ E+E +R
Sbjct: 2521 AVNAQAPVAVAPVLPVLETPMTLQQSFGAELSRVRGDLEGKLEEARAELTRNTEAYKQYRARAHTAIKNSGASQRDTEARIAQAHKELSAEQEAMR 2616
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig897.13.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2N6_9PHAE1.960e-2865.66GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LEJ5_ECTSI9.240e-2866.67GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 89..109
NoneNo IPR availableCOILSCoilCoilcoord: 57..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig897contigA-nodosum_M_contig897:120916..121596 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig897.13.1mRNA_A-nodosum_M_contig897.13.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig897 120914..121596 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig897.13.1 ID=prot_A-nodosum_M_contig897.13.1|Name=mRNA_A-nodosum_M_contig897.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=111bp
SRLERAEGDAGEETAAATAEASMVAPRLLPVLETPLTIQESFAAEMARVE
AELNSKLEMARAELSRNTEAYKQYRARAHTAIKNSGASQREAEARITQAH
RELATERELVR
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