prot_A-nodosum_M_contig892.5.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig892.5.1
Unique Nameprot_A-nodosum_M_contig892.5.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length154
Homology
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BLAST of mRNA_A-nodosum_M_contig892.5.1 vs. uniprot
Match: A0A6H5KLU7_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU7_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 5.560e-5
Identity = 35/94 (37.23%), Postives = 43/94 (45.74%), Query Frame = 0 
Query:   21 RHRLREVQDRQIVSVCLGIEHMMKIRNKTEK------------------------DGRKRSGQDQGPHHHDERVCRLCQSTRRVLSTARAHASQ 90
            + RL+E+Q+ Q+ SVCLGIEH+M  R K  K                        D R     D   H H    CRLC+ST RVLSTA  H  +
Sbjct:   19 KRRLQEIQELQVASVCLGIEHLMNKRRKCAKGAATRVRPAPPAGQQQARLSRESGDARDSCSSDGRDHQHP---CRLCESTLRVLSTALLHVKR 109
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig892.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLU7_9PHAE5.560e-537.23C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig892contigA-nodosum_M_contig892:81153..89081 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig892.5.1mRNA_A-nodosum_M_contig892.5.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig892 80345..89087 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig892.5.1 ID=prot_A-nodosum_M_contig892.5.1|Name=mRNA_A-nodosum_M_contig892.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=154bp
MCAWNMRSANRQTCFVLRTNRHRLREVQDRQIVSVCLGIEHMMKIRNKTE
KDGRKRSGQDQGPHHHDERVCRLCQSTRRVLSTARAHASQKHDGRNCEAC
RMWAMVKARCASLRIAIGAGSDENTTIDGGEAAGAAGPSRPAVAPEGWGS
SCE*
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