prot_A-nodosum_M_contig892.4.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig892.4.2
Unique Nameprot_A-nodosum_M_contig892.4.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length317
Homology
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BLAST of mRNA_A-nodosum_M_contig892.4.2 vs. uniprot
Match: D8LIC1_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC1_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.860e-19
Identity = 51/75 (68.00%), Postives = 63/75 (84.00%), Query Frame = 0 
Query:  232 ETRQVKIARYLAKRNRRCWVK--TSSYESRKKVANGRLRHKGRFLPLISDFIPIAELQRRQRAMMKEMQEKAARA 304
            + R+ K+ARYLAK+ RRCW K   SSY+SR++VAN R RHKGRFLPL S+F+PIAELQRRQRA+M +M+EKAA A
Sbjct:  255 QVRRQKVARYLAKKQRRCWSKPAASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRQRALMVQMREKAAAA 329
[Close]
BLAST of mRNA_A-nodosum_M_contig892.4.2 vs. uniprot
Match: A0A6H5KKD0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD0_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.650e-19
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 0 
Query:  232 ETRQVKIARYLAKRNRRCWVK--TSSYESRKKVANGRLRHKGRFLPLISDFIPIAELQRRQRAMMKEMQEKAA 302
            + R+ K+ARYLAK+ RRCW K   SSY+SR++VAN R RHKGRFLPL S+F+PIAELQRRQRA+M +M+EKAA
Sbjct:  256 QVRRQKVARYLAKKQRRCWSKPAASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRQRALMVQMREKAA 328
[Close]
BLAST of mRNA_A-nodosum_M_contig892.4.2 vs. uniprot
Match: A0A6H5KZS0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZS0_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.220e-18
Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 0 
Query:  232 ETRQVKIARYLAKRNRRCWVKTSSYESRKKVANGRLRHKGRFLPLISDFIPIAELQRRQRAMMKEMQEKAARA 304
            + R+ K+ARYLAK+ RR W K S Y+SR++VAN R RHKGRFLPL S+F+PIAE+QRRQR +M +M+EKAA A
Sbjct:  303 QVRRQKVARYLAKKQRRRWSKASCYQSRQRVANSRPRHKGRFLPLESEFVPIAEVQRRQRVLMAQMREKAAAA 375
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig892.4.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIC1_ECTSI1.860e-1968.00CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KKD0_9PHAE3.650e-1968.49CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KZS0_9PHAE6.220e-1864.38CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 283..307
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 295..316
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..27
IPR010402CCT domainPFAMPF06203CCTcoord: 234..274
e-value: 5.4E-15
score: 55.2
IPR010402CCT domainPROSITEPS51017CCTcoord: 234..276
score: 10.427066

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig892contigA-nodosum_M_contig892:43130..44326 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig892.4.2mRNA_A-nodosum_M_contig892.4.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig892 33293..44700 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig892.4.2 ID=prot_A-nodosum_M_contig892.4.2|Name=mRNA_A-nodosum_M_contig892.4.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=317bp
MKRGPPSSGALQPNPAFQTNKSSSGKPTAELAAAEPGELQPMDFDGGLGG
DQGGTENIADSIDEFLDFLALASSGPVAGTDGMKIPESDLDLAWLDNFDN
LPPASPISEVVVTSTDRENISPPSEDLSPAAVLSMTPSEREPTSVAAEAA
VAVVAAVSAAAEAAAAFFDPAACGALAQPYDGGLAMVAPTVTSAAEGEGD
GTGRYVNVEPAIPRRDTTADEGGGYALMNRGETRQVKIARYLAKRNRRCW
VKTSSYESRKKVANGRLRHKGRFLPLISDFIPIAELQRRQRAMMKEMQEK
AARADQDEGAPSSHIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain