prot_A-nodosum_M_contig8874.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8874.1.1
Unique Nameprot_A-nodosum_M_contig8874.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length305
Homology
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BLAST of mRNA_A-nodosum_M_contig8874.1.1 vs. uniprot
Match: A0A6H5KYY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.770e-7
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0 
Query:   46 GGRAGRRRSFGEFVRATLTGDSQTRLRDHLFDLHTASPAPP 86
            GGR  RRRSFGE +R+ +TG+S+ RLRDHLFD  TASPAPP
Sbjct:  283 GGRPSRRRSFGEIIRSVVTGNSEVRLRDHLFDFSTASPAPP 323
[Close]
BLAST of mRNA_A-nodosum_M_contig8874.1.1 vs. uniprot
Match: D8LDS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS5_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.520e-6
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0 
Query:   47 GRAGRRRSFGEFVRATLTGDSQTRLRDHLFDLHTASPAPP 86
            GR  RRRSFGE +R+ +TG+S+ RLRDHLFD  TASPAPP
Sbjct:  285 GRPSRRRSFGEIIRSAVTGNSEVRLRDHLFDFSTASPAPP 324
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8874.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYY1_9PHAE4.770e-770.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDS5_ECTSI1.520e-670.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..216
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..135

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8874contigA-nodosum_M_contig8874:17718..18632 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8874.1.1mRNA_A-nodosum_M_contig8874.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8874 17718..18632 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8874.1.1 ID=prot_A-nodosum_M_contig8874.1.1|Name=mRNA_A-nodosum_M_contig8874.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=305bp
VALEGQAPASGLAGSGVSSRKDSSSEGDHLVGSGGSTPVAARGVGGGRAG
RRRSFGEFVRATLTGDSQTRLRDHLFDLHTASPAPPPTLYISDSTELRSD
SIRSSSPSADKGHETEDRKSSPSTGSSDDYRTKKALKKPATKHSGGKSPP
GERTRYPTRRRPPESSPEGVRGSDGGGDEAAGRLNGRSSGGVRRRNGSAR
RATSTDNANTDGGGSFGYTVGETPNMRAKRLMEWRRKRSDQMETQAAALR
RRGTRGAGADVATGPSTRIVTRQGSGVIGRANSALNRGFRHVERFRSHVS
GAGAG
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