prot_A-nodosum_M_contig887.7.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig887.7.1
Unique Nameprot_A-nodosum_M_contig887.7.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length123
Homology
BLAST of mRNA_A-nodosum_M_contig887.7.1 vs. uniprot
Match: D8LTD5_ECTSI (Polyadenylate-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 4.670e-33
Identity = 74/89 (83.15%), Postives = 81/89 (91.01%), Query Frame = 0
Query:   33 GFQAAPATNESLTAAAAFAAAPPEKQ-NMIGERLYPLIHEGEPQLAGKITGMLLEMDKGELLHLLESPEALQAKINEALQVLSEHQAQD 120
            G QAAPATNESL+AAA  AAAPPEKQ NMIGERLYPLI+EG+P LAGKITGMLLEMD GELLHLLESP++L AKINEALQVLSEHQ ++
Sbjct:  600 GPQAAPATNESLSAAA-LAAAPPEKQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPDSLAAKINEALQVLSEHQQEN 687          
BLAST of mRNA_A-nodosum_M_contig887.7.1 vs. uniprot
Match: A0A7R9U8R0_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8R0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.780e-28
Identity = 59/83 (71.08%), Postives = 68/83 (81.93%), Query Frame = 0
Query:   37 APATNESLTAAAAFAAAPPEKQNMIGERLYPLIHEGEPQLAGKITGMLLEMDKGELLHLLESPEALQAKINEALQVLSEHQAQ 119
            AP    +LT +A  AA+P +++NMIGERLYPLI   +PQLAGKITGMLLEMD  ELLHLLESP+ALQAKINEALQVL +HQ Q
Sbjct:   45 APPVEAALTPSALAAASPTQQKNMIGERLYPLIMGTQPQLAGKITGMLLEMDNSELLHLLESPDALQAKINEALQVLEKHQQQ 127          
BLAST of mRNA_A-nodosum_M_contig887.7.1 vs. uniprot
Match: A0A7R9W8W3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W8W3_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.600e-27
Identity = 56/78 (71.79%), Postives = 63/78 (80.77%), Query Frame = 0
Query:   41 NESLTAAAAFAAAPPEKQNMIGERLYPLIHEGEPQLAGKITGMLLEMDKGELLHLLESPEALQAKINEALQVLSEHQA 118
            NE+LTA+A  +A P  ++NMIGERLYPLIH  +P LAGKITGMLLEMD  ELLHLLESP+AL AKI EALQVL  H A
Sbjct:   36 NEALTASALASATPEMQKNMIGERLYPLIHHSQPDLAGKITGMLLEMDNSELLHLLESPDALNAKIQEALQVLEAHNA 113          
BLAST of mRNA_A-nodosum_M_contig887.7.1 vs. uniprot
Match: A0A7S2RUB9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RUB9_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.700e-27
Identity = 59/80 (73.75%), Postives = 67/80 (83.75%), Query Frame = 0
Query:   38 PATNESLTAAAAFAAAPPEKQNMIGERLYPLIHEGEPQLAGKITGMLLEMDKGELLHLLESPEALQAKINEALQVLSEHQ 117
            PA +E LTAAA  +A+P  ++NMIGERLYPLIH  EP+LAGKITGMLLEMD  ELLHLLESP+AL+AKI EALQVL  HQ
Sbjct:  227 PAPHEPLTAAALASASPDVQKNMIGERLYPLIHHSEPELAGKITGMLLEMDNSELLHLLESPDALKAKIGEALQVLENHQ 306          
BLAST of mRNA_A-nodosum_M_contig887.7.1 vs. uniprot
Match: K0RXK8_THAOC (PABC domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXK8_THAOC)

HSP 1 Score: 107 bits (267), Expect = 3.850e-27
Identity = 58/80 (72.50%), Postives = 63/80 (78.75%), Query Frame = 0
Query:   41 NESLTAAAAFAAAPPEKQNMIGERLYPLIHEGEPQLAGKITGMLLEMDKGELLHLLESPEALQAKINEALQVLSEHQAQD 120
            NE LT AA  +A P  ++NMIGERLYPLIH+ +P LAGKITGMLLEMD  ELLHLLESPEAL AKI EALQVL  H A D
Sbjct:   27 NEQLTPAALASATPEIQKNMIGERLYPLIHQTQPDLAGKITGMLLEMDNSELLHLLESPEALGAKIQEALQVLDAHNAAD 106          
BLAST of mRNA_A-nodosum_M_contig887.7.1 vs. uniprot
Match: G4ZHX5_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4ZHX5_PHYSP)

HSP 1 Score: 108 bits (270), Expect = 4.050e-26
Identity = 61/85 (71.76%), Postives = 69/85 (81.18%), Query Frame = 0
Query:   36 AAPATN---ESLTAAAAFAAAPPEKQNMIGERLYPLIHEGEPQLAGKITGMLLEMDKGELLHLLESPEALQAKINEALQVLSEHQ 117
            AAP  N   E LT+AA  AA+P  ++NMIGERLYPLIH  +P+LAGKITGMLLEMD GELLHLLESPEAL+AKI+EAL VL  HQ
Sbjct:  232 AAPVQNAGPEPLTSAALAAASPEIQKNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKISEALAVLEAHQ 316          
BLAST of mRNA_A-nodosum_M_contig887.7.1 vs. uniprot
Match: A0A7S1Y0F8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0F8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 9.410e-26
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 0
Query:   51 AAAPPEKQNMIGERLYPLIHEGEPQLAGKITGMLLEMDKGELLHLLESPEALQAKINEALQVLSEHQAQ 119
            AA+P  ++NMIGERLYPLI + +PQLAGKITGMLLEMD  ELLHLLESP+ALQAKI EALQVL +HQ Q
Sbjct:   44 AASPAAQKNMIGERLYPLIMQSQPQLAGKITGMLLEMDNSELLHLLESPDALQAKIAEALQVLEKHQQQ 112          
BLAST of mRNA_A-nodosum_M_contig887.7.1 vs. uniprot
Match: A0A2D4BDJ5_PYTIN (Polyadenylate-binding protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDJ5_PYTIN)

HSP 1 Score: 110 bits (274), Expect = 1.340e-25
Identity = 57/77 (74.03%), Postives = 66/77 (85.71%), Query Frame = 0
Query:   42 ESLTAAAAFAAAPPEKQNMIGERLYPLIHEGEPQLAGKITGMLLEMDKGELLHLLESPEALQAKINEALQVLSEHQA 118
            E LT+AA  AA+P  ++NMIGERLYPLIH  +P+LAGKITGMLLEMD GELLHLLESPEAL+AKI EA+QVL  HQ+
Sbjct:  551 EPLTSAALAAASPETQKNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKIQEAIQVLEAHQS 627          
BLAST of mRNA_A-nodosum_M_contig887.7.1 vs. uniprot
Match: K3X8Z0_GLOUD (Polyadenylate-binding protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X8Z0_GLOUD)

HSP 1 Score: 109 bits (273), Expect = 1.840e-25
Identity = 57/77 (74.03%), Postives = 66/77 (85.71%), Query Frame = 0
Query:   42 ESLTAAAAFAAAPPEKQNMIGERLYPLIHEGEPQLAGKITGMLLEMDKGELLHLLESPEALQAKINEALQVLSEHQA 118
            E LT+AA  AA+P  ++NMIGERLYPLIH  +P+LAGKITGMLLEMD GELLHLLESPEAL+AKI EA+QVL  HQ+
Sbjct:  554 EPLTSAALAAASPDVQKNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKIQEAIQVLEAHQS 630          
BLAST of mRNA_A-nodosum_M_contig887.7.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.920e-25
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 0
Query:   42 ESLTAAAAFAAAPPEKQNMIGERLYPLIHEGEPQLAGKITGMLLEMDKGELLHLLESPEALQAKINEALQVLSEH 116
            ESLTA A  AA+P  ++NMIGERLYPLIHE +P+LAGKITGMLLEMD GELLHLLESP++L+AKI EALQVL  H
Sbjct:  593 ESLTAQALAAASPEMQKNMIGERLYPLIHESQPELAGKITGMLLEMDNGELLHLLESPDSLKAKIQEALQVLEAH 667          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig887.7.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTD5_ECTSI4.670e-3383.15Polyadenylate-binding protein n=2 Tax=Ectocarpus T... [more]
A0A7R9U8R0_9STRA2.780e-2871.08Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9W8W3_9STRA1.600e-2771.79Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2RUB9_9STRA1.700e-2773.75Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
K0RXK8_THAOC3.850e-2772.50PABC domain-containing protein n=1 Tax=Thalassiosi... [more]
G4ZHX5_PHYSP4.050e-2671.76Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A7S1Y0F8_9STRA9.410e-2676.81Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2D4BDJ5_PYTIN1.340e-2574.03Polyadenylate-binding protein n=2 Tax=Pythium TaxI... [more]
K3X8Z0_GLOUD1.840e-2574.03Polyadenylate-binding protein n=2 Tax=Pythiaceae T... [more]
A0A835YVH9_9STRA1.920e-2576.00Polyadenylate-binding protein n=1 Tax=Tribonema mi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002004Polyadenylate-binding protein/Hyperplastic disc proteinSMARTSM00517poly_2coord: 53..116
e-value: 5.4E-32
score: 122.3
IPR002004Polyadenylate-binding protein/Hyperplastic disc proteinPFAMPF00658PABPcoord: 51..113
e-value: 3.8E-28
score: 97.3
IPR002004Polyadenylate-binding protein/Hyperplastic disc proteinPROSITEPS51309PABCcoord: 41..118
score: 19.6668
NoneNo IPR availableGENE3D1.10.1900.10coord: 38..122
e-value: 2.6E-31
score: 109.5
NoneNo IPR availablePANTHERPTHR24012:SF805POLYADENYLATE-BINDING PROTEINcoord: 41..116
NoneNo IPR availablePANTHERPTHR24012RNA BINDING PROTEINcoord: 41..116
IPR036053PABC (PABP) domainSUPERFAMILY63570PABC (PABP) domaincoord: 38..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig887contigA-nodosum_M_contig887:121578..123931 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig887.7.1mRNA_A-nodosum_M_contig887.7.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig887 119134..124471 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig887.7.1 ID=prot_A-nodosum_M_contig887.7.1|Name=mRNA_A-nodosum_M_contig887.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=123bp
MYLYLLLNSCKVQVHEGEDAKEKGNEGKSRGFGFQAAPATNESLTAAAAF
AAAPPEKQNMIGERLYPLIHEGEPQLAGKITGMLLEMDKGELLHLLESPE
ALQAKINEALQVLSEHQAQDGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002004PABP_HYD
IPR036053PABP-dom