prot_A-nodosum_M_contig886.8.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig886.8.2
Unique Name	prot_A-nodosum_M_contig886.8.2
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	814

Homology

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BLAST of mRNA_A-nodosum_M_contig886.8.2 vs. uniprot
Match: A0A6H5L7I3_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7I3_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 1.340e-64
Identity = 211/572 (36.89%), Postives = 268/572 (46.85%), Query Frame = 0

Query:  323 EFPVNLECPMCFNPLAVVALFACGHGACWECAHDWCGRGTTPTMDCPACHVSIPRNGFRRCIVLDQVVENAVMASGLDDAEWHGRLQRGRDLARRAEASRRSAREVQRSAEETIAKQAAELERLRQEAKSRSLGR-GRRSHEGFSPSMADFGFHLVGNGH-------DRLESSSITASPGTSSFEDSLFRPRHPRTDPTASMSRGEAAAXXXXXXXASLRVLPSDPGGV---------RPMLQTSSSPSS--FGLAMDNPWFSLRPSLPSRQQAGVSMSAMRLGHEAYGRSSASTRSY----ASPIVRGVDLAAGAALNSEHERRYPTG-------QHRAHPSRPSESAAGDAVTPGTRAR---NAALSSLYAFREDRRNSAMSGATLP----------PGRRLQPQVPSARSSRKRYSPRSSRGMSASAXXXXXXXXXXXXXXXXXXMEAGPAAVATSAAVGSPTP-PDRFGLGSPSNDLAV-----------------------SRFEGVDSD--------------LDALDMISSHDDFGARPSEWDDVLAAVSMPLQEGDDSQPQTRG 813
            E P  LEC +CFNPLAV ALFACGHG+CWECAHDWC R T+ TMDCP CHVS+PR+ FRRC+VLD+VV+ AV A+G+DD EW  R++RG+ LAR AE  RRS R+ QRSAE+TIA+QAAELE+LR+EAKSR +GR   R+ EG + SMA+FGF ++  G+       D  + +S  +                                XXXXXXX +  + PS   GV          P+   +++  S  FG A  +PWFSLRPS PSR   G      R+  E  GRS +S RS     A     G+   A AAL S H      G           HP R S S        G R R   ++A +      +    SA +G  L           PGR    QVP ARS RK +      G  ASA                    AG AA     +   P P  +  GL  P                              R  G  +               LD  D+++ HDD  +R SEWDDVLA++S P+Q  DD++  + G
Sbjct:  299 ELPRILECAVCFNPLAVAALFACGHGSCWECAHDWCSRETSSTMDCPTCHVSVPRSDFRRCVVLDEVVDRAVTAAGMDDDEWRARVERGQKLAREAEGRRRSLRDAQRSAEDTIAEQAAELEKLREEAKSRRVGRRALRAQEGSTSSMAEFGFGVLNGGNLTGGRRRDFFDPASQRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGMPPSAAYGVVGPRGHAHRHPLSAAAAAAGSSGFGHAEGDPWFSLRPSQPSRGATGAMAPGRRMARETAGRSGSSGRSAGNSAAXXXXMGLGQPAAAALKSVHGHGRAGGGGTNWRSSAYLHPGRSSLSGGAGXXXXGGRTRLHGSSARADPRGGTDVNVGSAAAGTPLDGGNLTNPVGGPGRSFTVQVP-ARSIRKTHGLSGLHGGGASASGG----------------HAGSAAAVVGTSTSYPNPLANGLGLAPPXXXXXXXXXXXXXXXXXXXXXXGDGLPFGGRTHGRAAXXXXXXXXXXXXAPMLDLGDLMAGHDDASSR-SEWDDVLASISTPMQATDDARSNSPG 852

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig886.8.2 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig886.8.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5L7I3_9PHAE	1.340e-64	36.89	RING-type domain-containing protein n=2 Tax=Ectoca...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 429..453
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 421..464
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 686..709
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 485..499
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 617..651
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 485..522
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 421..460
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 669..709
None	No IPR available	CDD	cd16449	RING-HC	coord: 330..371 e-value: 6.24797E-8 score: 47.4621
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 317..392
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 310..404 e-value: 2.6E-10 score: 41.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 330..372 score: 10.512376

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig886	contig	A-nodosum_M_contig886:75693..105965 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig886.8.2	mRNA_A-nodosum_M_contig886.8.2	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig886 73457..106005 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig886.8.2 ID=prot_A-nodosum_M_contig886.8.2|Name=mRNA_A-nodosum_M_contig886.8.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=814bp
MDQLWEVAERDLHDGPSGDEEVGYNRNEERMEVDGEQKEEGEEEEENEET
ESWDDDVEGQHSQDEEEQPQSMKRHRRKRPRQDSGGDSGGPSAEQGESGE
VFEEDDGHQEVIEIFDDDEEARSSTGRGSRGCDLSDFSSPLPPGDNPAAT
ASATATAAMEPSRPFTTAVVARAGDLFSQTGVSSPPTLNFSPTSSSSSSN
SSSTKKDACSDPTGTSRVEPSRQPGRKPSLPDSSRRHAWRSRAVPSRAKS
PLGEARGEGKRDGNRLGEKMPAAKQSWSESRGSGEQSAEAELSSGQASSR
LVRLANNTPATRAATTATTTAPEFPVNLECPMCFNPLAVVALFACGHGAC
WECAHDWCGRGTTPTMDCPACHVSIPRNGFRRCIVLDQVVENAVMASGLD
DAEWHGRLQRGRDLARRAEASRRSAREVQRSAEETIAKQAAELERLRQEA
KSRSLGRGRRSHEGFSPSMADFGFHLVGNGHDRLESSSITASPGTSSFED
SLFRPRHPRTDPTASMSRGEAAAAATAAAAASLRVLPSDPGGVRPMLQTS
SSPSSFGLAMDNPWFSLRPSLPSRQQAGVSMSAMRLGHEAYGRSSASTRS
YASPIVRGVDLAAGAALNSEHERRYPTGQHRAHPSRPSESAAGDAVTPGT
RARNAALSSLYAFREDRRNSAMSGATLPPGRRLQPQVPSARSSRKRYSPR
SSRGMSASAAAMSIAGATASSSSSSFSMEAGPAAVATSAAVGSPTPPDRF
GLGSPSNDLAVSRFEGVDSDLDALDMISSHDDFGARPSEWDDVLAAVSMP
LQEGDDSQPQTRG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING