prot_A-nodosum_M_contig8841.2.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8841.2.1
Unique Nameprot_A-nodosum_M_contig8841.2.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length186
Homology
BLAST of mRNA_A-nodosum_M_contig8841.2.1 vs. uniprot
Match: D8LTR4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR4_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 1.590e-107
Identity = 149/185 (80.54%), Postives = 166/185 (89.73%), Query Frame = 0
Query:    1 MELTGPQYVKTLPGSSPPIKYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIKEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGHLFG 185
            +ELTGPQYVKTL G+S P  YFDPL+ISSKFRAIDVKKFRESE+KHAR+AMLAF GMFVQELAHPLF+ G +D+GPAI HFQA++  FPLMPALLL+ +GI EGNNI+VGWVKQP+K GVADLK DYEPG+FGFDP+GL PKDEAG+  M TKELNNGRLAMIATIGVWAQELVDGKTILGHL G
Sbjct:   55 IELTGPQYVKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLKLGVADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLSG 239          
BLAST of mRNA_A-nodosum_M_contig8841.2.1 vs. uniprot
Match: A0A835Z091_9STRA (Fucoxanthin chlorophyll a/c binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z091_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.740e-57
Identity = 90/177 (50.85%), Postives = 120/177 (67.80%), Query Frame = 0
Query:    8 YVKTLPGSSPPIKYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIKEG--VADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGH 182
            + + + G++ P  +FDP+  SS      VKKFRE+EVKH R+AMLAF G+ +QE  HP F+ G  DLGPA +H Q +   FPL+   L   IG++E   I  GW K+  ++   VA+L ++Y PG+  FDP+ L PKD AG  +M+TKELNNGRLAMIAT+G+W QELVDG+TI GH
Sbjct:   42 FKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGH 218          
BLAST of mRNA_A-nodosum_M_contig8841.2.1 vs. uniprot
Match: A0A835ZAU2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAU2_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.100e-52
Identity = 86/181 (47.51%), Postives = 122/181 (67.40%), Query Frame = 0
Query:    9 VKTLPGSSPPIKYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELA-HPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIK-----EG-VADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGH 182
            ++ + G++ P+ ++DPL  +++    +++K+RE+E+KH R+AMLA  GM VQE   HP F T   DLGPA +H Q +   +P +P LLLV +G +E   I  GW KQ  K     EG VA+LK+DY PG+ GFDP+GL P+ E G+  ++ KE+NNGRLAMIA  G+WAQELVDG ++  H
Sbjct:   48 LQNMSGATAPVPFWDPLGFAAQVDGQELQKYREAELKHGRVAMLACLGMIVQEAGFHPFFGTAGADLGPAAFHLQKVGVNYPTLPLLLLVGVGAVESFTINKGWSKQDYKSSGLGEGFVANLKEDYFPGDLGFDPLGLYPQSEEGRRSIRNKEINNGRLAMIAIWGMWAQELVDGMSLYEH 228          
BLAST of mRNA_A-nodosum_M_contig8841.2.1 vs. uniprot
Match: A0A836CA40_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA40_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.460e-51
Identity = 84/180 (46.67%), Postives = 119/180 (66.11%), Query Frame = 0
Query:    9 VKTLPGSSPPIKYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIKEG------VADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGH 182
            ++ + G++ P+ Y+DPL  +SK    +++K+RE+E+KH R+AMLA  GM VQE  HP F+T  RD+GPA +H Q   + F  +P  L++ +G++E   I  GW KQ  KE       VA+LK+DY PG+ GFDP+GL P +   +  ++ KELNNGRLAMIA  G+WAQELVD  T+  H
Sbjct:   47 LENMSGATSPVPYWDPLGFASKVDDQELQKYREAELKHGRVAMLAALGMIVQENFHPFFNTAGRDIGPAAFHLQKTMEEFSFLPFALVLGVGLVELTTINKGWSKQDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPTNPRERTNIRNKELNNGRLAMIAIWGMWAQELVDHLTLAEH 226          
BLAST of mRNA_A-nodosum_M_contig8841.2.1 vs. uniprot
Match: A0A836CGF9_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF9_9STRA)

HSP 1 Score: 167 bits (423), Expect = 3.950e-49
Identity = 81/166 (48.80%), Postives = 115/166 (69.28%), Query Frame = 0
Query:   22 FDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQ-PIKEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQ-MKTKELNNGRLAMIATIGVWAQELVDGKTILGHLFG 185
            FDPL ++SK   I++K+++E E+KH R+AMLA  G  V E+ HPLF   + ++GP+I HFQ I +  P    L +  IG+ E +NI+ GWVKQ PI++G+A LK +Y  G+FGFDP+ L P  E  + + M+ KELNNGRLAM A +G+WAQELV+GK +  ++ G
Sbjct:   48 FDPLGLASKVSDIELKRYQECELKHGRVAMLAVLGSLVAEVFHPLFPM-SFEIGPSIRHFQIIEREVPYFWILAMFGIGVFEADNIYRGWVKQDPIRDGIASLKDNYIVGDFGFDPLNLGPTSEPQKFELMRAKELNNGRLAMFAILGIWAQELVNGKGVFENILG 212          
BLAST of mRNA_A-nodosum_M_contig8841.2.1 vs. uniprot
Match: A0A835YMD9_9STRA (Fucoxanthin chlorophyll a/c protein, LI818 clade n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD9_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.070e-48
Identity = 81/180 (45.00%), Postives = 114/180 (63.33%), Query Frame = 0
Query:    9 VKTLPGSSPPIKYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIKEG------VADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGH 182
            ++ + G++ P+ Y+DP  +++K    +++K+RE+E+KH R+AMLA  GM VQE  HP F T  RD+GPA +H Q   K F  +P  L+  +G +E   I  GW +   KE       VA+LK+DY PG+ GFDP+GL P     +  ++ KELNNGRLAMIA  G+WAQELVDG  +  H
Sbjct:   45 LEEMSGATAPVPYWDPAGLAAKVDDQELQKYREAELKHGRVAMLATLGMVVQENFHPFFGTAGRDIGPAAFHLQETMKEFDALPLALVCGVGAVEFLTIDKGWSRSDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPSSPEERTNIRNKELNNGRLAMIAIWGMWAQELVDGLPLAEH 224          
BLAST of mRNA_A-nodosum_M_contig8841.2.1 vs. uniprot
Match: A0A7S3YG15_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG15_HETAK)

HSP 1 Score: 162 bits (409), Expect = 9.270e-47
Identity = 81/173 (46.82%), Postives = 110/173 (63.58%), Query Frame = 0
Query:    9 VKTLPGSSPPIKYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGW--VKQPIKEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTI 179
            V+ LPG  PP+ +FDPL IS       +KKFRE+E+KH R+AMLA  G+ + E  +PLFD   + LG  IYHFQ   ++ P    ++L  I ++EG  I   W  V+    + +ADL+ DYEPG+ GFDP+GL P D A   +M+TKEL NGRLAM+   G+ AQEL+ G+ I
Sbjct:   58 VEDLPGVLPPVGFFDPLGISQGKNENAIKKFREAELKHGRIAMLASVGILLAERFNPLFD--GKILGAGIYHFQQADQLLPYFWVIVLFAIALIEGQTILTAWDSVEDSQNKPIADLRADYEPGDLGFDPLGLAPSDPAALAEMRTKELQNGRLAMLGIAGIVAQELLTGQPI 228          
BLAST of mRNA_A-nodosum_M_contig8841.2.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 6.720e-45
Identity = 90/183 (49.18%), Postives = 110/183 (60.11%), Query Frame = 0
Query:    5 GPQYVKTLPGSSPPI---KYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIKEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGHLF 184
            G  YV TLPG+  P    K FDPL +S      D+KK+RE+E+KH R+AMLA  G+ V E  HPLF  G   +GPAI HFQ IS  FP   A  L+ +  +E N I   +       G   LK+DY PG+ GFDP+ L P  EA    MKTKELNNGRLAMI   G+ AQELV+G+ IL + F
Sbjct:   44 GSDYVATLPGA--PFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLF-MGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFF 223          
BLAST of mRNA_A-nodosum_M_contig8841.2.1 vs. uniprot
Match: A0A7R9U0X8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0X8_9STRA)

HSP 1 Score: 156 bits (394), Expect = 9.790e-45
Identity = 83/172 (48.26%), Postives = 111/172 (64.53%), Query Frame = 0
Query:    9 VKTLPGSSPPIKYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGW--VKQPIKEG--VADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDG 176
            + ++PGSS P   FDPL +S+    + +KK++E+E+KH R+AMLA  G+ VQE  HPLF  G    GPAI+ FQ +  V+PL        +  +EG  I  GW  +++    G  VA LK+DY PG+ GFDP+GL PKDEAG  +M+TKELN+ RLAMI   G+ AQELV G
Sbjct:   33 LSSIPGSSSPFPGFDPLGLSTDLDDMTLKKYQEAELKHGRIAMLAALGILVQESFHPLF--GGAISGPAIFEFQQVDNVYPLFWVAFGTAVAFVEGTTINQGWESIRETKARGADVAGLKEDYTPGDIGFDPLGLCPKDEAGFAEMRTKELNHCRLAMIGVAGMVAQELVLG 202          
BLAST of mRNA_A-nodosum_M_contig8841.2.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.930e-43
Identity = 85/180 (47.22%), Postives = 108/180 (60.00%), Query Frame = 0
Query:    5 GPQYVKTLPGSSPPI---KYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIKEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILG 181
            G  YV TLPG+  P    K FDPL++S      D+KK+RE+E+KH R+AMLA  G+ V E  HPLF  G   +GPA+ HFQ IS  +P      L+ +  +E N I   +       G   LK+DY PG+ GFDP+ L P+DEA    MKTKELNNGRLAMI   G+  QEL++   ILG
Sbjct:   44 GSDYVATLPGA--PFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLF-MGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8841.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTR4_ECTSI1.590e-10780.54Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A835Z091_9STRA1.740e-5750.85Fucoxanthin chlorophyll a/c binding protein n=1 Ta... [more]
A0A835ZAU2_9STRA2.100e-5247.51Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A836CA40_9STRA2.460e-5146.67Light harvesting complex protein n=2 Tax=Tribonema... [more]
A0A836CGF9_9STRA3.950e-4948.80Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A835YMD9_9STRA1.070e-4845.00Fucoxanthin chlorophyll a/c protein, LI818 clade n... [more]
A0A7S3YG15_HETAK9.270e-4746.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7G7Q9_ECTSI6.720e-4549.18Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A7R9U0X8_9STRA9.790e-4548.26Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
D7G7Q6_ECTSI1.930e-4347.22Light harvesting complex protein n=2 Tax=Ectocarpu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 1..185
e-value: 1.1E-40
score: 141.7
NoneNo IPR availablePANTHERPTHR21649:SF125CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTICcoord: 6..183
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 7..183
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 10..172
e-value: 2.7E-34
score: 119.0
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 6..183

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8841contigA-nodosum_M_contig8841:18120..20389 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8841.2.1mRNA_A-nodosum_M_contig8841.2.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8841 18039..21329 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8841.2.1 ID=prot_A-nodosum_M_contig8841.2.1|Name=mRNA_A-nodosum_M_contig8841.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=186bp
MELTGPQYVKTLPGSSPPIKYFDPLDISSKFRAIDVKKFRESEVKHARLA
MLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIG
ILEGNNIFVGWVKQPIKEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQM
KTKELNNGRLAMIATIGVWAQELVDGKTILGHLFG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln