prot_A-nodosum_M_contig883.21.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig883.21.2
Unique Nameprot_A-nodosum_M_contig883.21.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length255
Homology
BLAST of mRNA_A-nodosum_M_contig883.21.2 vs. uniprot
Match: A0A6H5JNV3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNV3_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 1.630e-96
Identity = 154/219 (70.32%), Postives = 185/219 (84.47%), Query Frame = 0
Query:   37 AASLGRPSKMFRRRTHLSMEV-IANNPVRNSRVYGRQSDEGKTDKSVPDMNEEILESGVESVRCVISIKGLDEQLGIMSTEAALKRAQEEGLDLVMISQEADPPVVKIIDYGKFKYKQNQRKKDNKAKQKATELKEVKMSYKIETHDYDVRLKNANKFIMQGNRVRVVVQFRGREQSHMDLGNVLLDRVSNDLKGIALMEPKRREGNRLSMIVYPKPTT 254
            A S+    +  RR T  +M +   NNP+  S+VYGR   +G +    PDMNEEI  SG+E VRCVIS+KG+DEQLGIMST+ AL+RA +EGLDLVMI+++A+PPVVKIIDYGKFKYKQ++RKKDNKAK KATE+KEVKMSYKIETHDY VRL+NA KF+ QG+RVR+VV FRGREQSHMDLGNVLLD+V+NDL+G+AL+EPKRREGNRLSMIV+PKPTT
Sbjct:   73 AVSVVPREQQRRRATQPAMALDTTNNPI-TSKVYGRADTKGGS--KTPDMNEEIAASGIEEVRCVISVKGMDEQLGIMSTQQALQRASDEGLDLVMITKDAEPPVVKIIDYGKFKYKQDRRKKDNKAKHKATEMKEVKMSYKIETHDYMVRLRNAQKFVKQGHRVRIVVTFRGREQSHMDLGNVLLDKVTNDLEGLALVEPKRREGNRLSMIVFPKPTT 288          
BLAST of mRNA_A-nodosum_M_contig883.21.2 vs. uniprot
Match: A0A836C915_9STRA (Translation initiation factor IF-3, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C915_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.030e-53
Identity = 108/192 (56.25%), Postives = 134/192 (69.79%), Query Frame = 0
Query:   65 NSRVYGRQSDEGKTDKSV----PDMNEEILESGVESVRCVISIKGLDEQLGIMSTEAALKRAQEEGLDLVMISQEADPPVVKIIDYGKFKYKQNQRKKDNKAKQKATELKEVKMSYKIETHDYDVRLKNANKFIMQGNRVRVVVQFRGREQSHMDLGNVLLDRVSNDLKGIALMEPK-RREGNRLSMIVYPK 251
            NS +YGR    G T K V    P MN EI    V  VR  I+    DEQLGIM T  AL +AQE G+DL+MI++ A+PPV KIID+GK KY   ++KKD+K   K +E+KEVKMSYKIE HDY VRL+NA KFI QG+RV+VVVQFRGREQ HMDLG+ LL ++  D +G    + + +REGNRLS+I+ PK
Sbjct:   79 NSSMYGRGR--GSTRKPVEEDKPMMNSEIR---VPKVRVSIAKPEGDEQLGIMDTAEALAKAQELGVDLIMIAENAEPPVCKIIDFGKLKYMSEKKKKDSKKNAKQSEMKEVKMSYKIEDHDYQVRLRNAKKFIAQGDRVKVVVQFRGREQQHMDLGHELLTKIVADCEGTVATDGRPKREGNRLSLILAPK 265          
BLAST of mRNA_A-nodosum_M_contig883.21.2 vs. uniprot
Match: A0A6V1LHA9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LHA9_HETAK)

HSP 1 Score: 171 bits (432), Expect = 6.570e-49
Identity = 91/170 (53.53%), Postives = 126/170 (74.12%), Query Frame = 0
Query:   82 VPDMNEEILESGVESVRCVISIKGLDEQLGIMSTEAALKRAQEEGLDLVMISQEADPPVVKIIDYGKFKYKQNQRKKDNKAKQKATELKEVKMSYKIETHDYDVRLKNANKFIMQGNRVRVVVQFRGREQSHMDLGNVLLDRVSNDLKGIALMEPKRREGNRLSMIVYPK 251
            +P MNEEI    +  V  V +    DE LGI+S + AL++A+E   DLV+I+++ADPPV KI++Y +F Y Q +++K+  + Q+A ELKEVKMSYKIE HDY+VR K A KF+  G+RV+++VQFRGREQ HMDLG  LL R+S D++ +AL EP RREGNRL+M++ P+
Sbjct:   58 LPPMNEEITAPQLRVV--VANPAASDEALGILSLQEALEKAEELDQDLVLIAEKADPPVAKIMNYSRFLYNQQKKQKEQMSAQRAKELKEVKMSYKIEKHDYEVRAKAATKFLKGGHRVKLLVQFRGREQQHMDLGRDLLGRLSGDVEDLALPEPIRREGNRLTMLLTPR 225          
BLAST of mRNA_A-nodosum_M_contig883.21.2 vs. uniprot
Match: W7TKZ8_9STRA (Translation initiation factor if-3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKZ8_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.020e-48
Identity = 95/179 (53.07%), Postives = 126/179 (70.39%), Query Frame = 0
Query:   77 KTDKSVPDMNEEILESGVESVRCVISI-KGLDEQLGIMSTEAALKRAQEEGLDLVMISQEADPPVVKIIDYGKFKYKQNQRKKDNKAKQKATELKEVKMSYKIETHDYDVRLKNANKFIMQGNRVRVVVQFRGREQSHMDLGNVLLDRVSNDLKGIALMEPK-RREGNRLSMIVYPKPT 253
            + D + P MN+ +L     +VR VIS  +  DE  G+M+T  AL +A+E GLDL+MIS+ ADPPVVKIIDYGKFKY   ++KK+     K TE+KEVKMSYKIE HDY VR+K   +F+ +G++V+V++QFRGREQ H+DLG+ LL +V  DLK +A+ E   RREG RL  +  PK T
Sbjct:  156 EVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEXXXXAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKKT 334          
BLAST of mRNA_A-nodosum_M_contig883.21.2 vs. uniprot
Match: A0A7S2H9R6_9STRA (Translation initiation factor IF-3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H9R6_9STRA)

HSP 1 Score: 165 bits (417), Expect = 6.980e-47
Identity = 88/166 (53.01%), Postives = 116/166 (69.88%), Query Frame = 0
Query:   85 MNEEILESGVESVRCVISIKGLDEQLGIMSTEAALKRAQEEGLDLVMISQEADPPVVKIIDYGKFKYKQNQRKKDNKAKQKATELKEVKMSYKIETHDYDVRLKNANKFIMQGNRVRVVVQFRGREQSHMDLGNVLLDRVSNDLKGIALMEPKRREGNRLSMIVYP 250
            MN+EI +S +  V  + +  G DE LG+M+   A+++A E  LDLV+IS  +DPPV KI+DYGK KY+  ++KKDN  K K  E+KEVKMSYKI+THDY VR K A KF+  G+RV+ VVQFRGREQ H++LG  LL ++S D K  A  +  RREGNR+ M + P
Sbjct:   63 MNDEIKQSPIRVV--LANAAGGDEMLGVMTNTEAMEKANEANLDLVLISPGSDPPVCKIVDYGKLKYQMERKKKDNLKKTKVNEMKEVKMSYKIDTHDYMVRQKAAIKFLKSGSRVKAVVQFRGREQQHINLGQELLKKLSEDCKEFATSDRPRREGNRVVMFINP 226          
BLAST of mRNA_A-nodosum_M_contig883.21.2 vs. uniprot
Match: A0A7S3KWM0_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWM0_9STRA)

HSP 1 Score: 159 bits (402), Expect = 7.800e-44
Identity = 91/174 (52.30%), Postives = 122/174 (70.11%), Query Frame = 0
Query:   83 PDMNEEILESGVESVRCVI--SIKGLDEQLGIMSTEAALKRAQEEG-LDLVMISQEADPPVVKIIDYGKFKYKQNQRKKDNKAKQKATELKEVKMSYKIETHDYDVRLKNANKFIMQGNRVRVVVQFRGREQSHMDLGNVLLDRVSNDLKGIALMEPK-RREGNRLSMIVYPKP 252
            P MN+EI +S    +R VI  S  G DE LG+MS + AL RAQ EG LDL++I+  +DPPV KI+DY K++Y Q ++ K+ K   KA+ELKEVKMSYKI+ HDY VR KNA KF+ QG+RV+  V FRGRE  H +LG  LLD+++ +L  +A  E + +REG  LS+I+ P+P
Sbjct:   57 PTMNDEITQS---ELRVVIASSSGGKDEALGVMSRKDALARAQAEGGLDLILINDSSDPPVCKIVDYSKYRYMQEKKAKEIKKNSKASELKEVKMSYKIDIHDYSVRKKNAAKFLQQGDRVKCTVMFRGREVQHDNLGFELLDKMAEELSNLAAKEGRPKREGRNLSLILGPRP 227          
BLAST of mRNA_A-nodosum_M_contig883.21.2 vs. uniprot
Match: A0A1Z5JUP4_FISSO (Translation initiation factor IF-3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUP4_FISSO)

HSP 1 Score: 155 bits (392), Expect = 2.060e-42
Identity = 92/189 (48.68%), Postives = 128/189 (67.72%), Query Frame = 0
Query:   66 SRVYGRQSDEGKTDKSVPDMNEEILESGVESVRCVISIKG-LDEQLGIMSTEAALKRAQE-EGLDLVMISQEADPPVVKIIDYGKFKYKQNQRKKDNKAKQKATELKEVKMSYKIETHDYDVRLKNANKFIMQGNRVRVVVQFRGREQSHMDLGNVLLDRVSNDLKGIALMEPK-RREGNRLSMIVYPK 251
            +R++ RQ ++   +  VP MNEEI     + +R + S+ G  DE LGIMS   AL +A+E  GLDL++I+ +ADPPV KI DY K++Y   ++ K+ K   KATE+KEVKMSYKI+ HDYDVR K+A KFI QGNRV+  V FRGRE  H +LG  LL++++ DL  + + E + +REG  +S+I  PK
Sbjct:   33 TRLFARQQNQPAIE--VPVMNEEIK---AKEIRVIASVTGGKDEALGIMSLVDALAKAKELGGLDLILINDKADPPVCKIADYSKYRYMLEKKAKELKKNSKATEIKEVKMSYKIDVHDYDVRKKSAIKFIKQGNRVKATVMFRGREVQHDNLGFDLLEKLAVDLSSVCIKESRPKREGRNISIIFSPK 216          
BLAST of mRNA_A-nodosum_M_contig883.21.2 vs. uniprot
Match: L8N0J6_9CYAN (Translation initiation factor IF-3 n=13 Tax=Cyanobacteria TaxID=1117 RepID=L8N0J6_9CYAN)

HSP 1 Score: 151 bits (381), Expect = 2.770e-42
Identity = 78/173 (45.09%), Postives = 125/173 (72.25%), Query Frame = 0
Query:   80 KSVPDMNEEILESGVESVRCVISIKGLDEQLGIMSTEAALKRAQEEGLDLVMISQEADPPVVKIIDYGKFKYKQNQRKKDNKAKQKATELKEVKMSYKIETHDYDVRLKNANKFIMQGNRVRVVVQFRGREQSHMDLGNVLLDRVSNDLKGIA-LMEPKRREGNRLSMIVYPK 251
            K +P +NE I    +     VI ++G  EQLGI++ + ALK A+E+ LDLV++S +ADPPV +I+DYGKFK++Q ++ ++ + KQ  +++KEVKM YKIE HDY VR+ +A +F+ +G++V+  V FRGRE  H+DL  VLL+R+++DL+ +A + +  +REG  ++M++ PK
Sbjct:    7 KDLPQINERIRYPKIR----VIDMEG--EQLGILTPKEALKMAEEKELDLVLVSDKADPPVCRIMDYGKFKFEQEKKAREARKKQHTSDVKEVKMRYKIEEHDYKVRINHAERFLKEGDKVKATVMFRGREIQHVDLAEVLLNRMASDLESVAEIQQYPKREGRNITMLMAPK 173          
BLAST of mRNA_A-nodosum_M_contig883.21.2 vs. uniprot
Match: A0A7S2KJ44_9STRA (Translation initiation factor IF-3 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJ44_9STRA)

HSP 1 Score: 154 bits (389), Expect = 7.970e-42
Identity = 78/151 (51.66%), Postives = 114/151 (75.50%), Query Frame = 0
Query:  104 KGLDEQLGIMSTEAALKRAQEEG-LDLVMISQEADPPVVKIIDYGKFKYKQNQRKKDNKAKQKATELKEVKMSYKIETHDYDVRLKNANKFIMQGNRVRVVVQFRGREQSHMDLGNVLLDRVSNDLKGIALMEPK-RREGNRLSMIVYPKP 252
            KG D+ LG+MS ++A++ AQE G LDL+MI+  +DPPV KI+DY K+++++ ++ K+ K   KATE+KEVKMSYKI+ HDY+VR K ANKFI+QGNRV+  + F+GRE  H  LG  LLD+++ DL+ + +ME + +R+G  LS ++ PKP
Sbjct:   78 KGKDDPLGVMSRDSAIQLAQEMGGLDLIMINPNSDPPVCKIVDYSKYRFEKEKKAKELKKNSKATEVKEVKMSYKIDVHDYEVRRKAANKFILQGNRVKCSIMFKGREIQHDKLGFELLDKLAADLEDVCVMEGRPKRDGRNLSCVITPKP 228          
BLAST of mRNA_A-nodosum_M_contig883.21.2 vs. uniprot
Match: UPI000A0242F9 (translation initiation factor IF-3 n=1 Tax=Clostridium massiliamazoniense TaxID=1347366 RepID=UPI000A0242F9)

HSP 1 Score: 149 bits (376), Expect = 1.520e-41
Identity = 82/168 (48.81%), Postives = 114/168 (67.86%), Query Frame = 0
Query:   85 MNEEILESGVESVRCVISIKGLDEQLGIMSTEAALKRAQEEGLDLVMISQEADPPVVKIIDYGKFKYKQNQRKKDNKAKQKATELKEVKMSYKIETHDYDVRLKNANKFIMQGNRVRVVVQFRGREQSHMDLGNVLLDRVSNDLKGIALME-PKRREGNRLSMIVYPK 251
            MNEEI E  +        I G  EQLG+MS++ ALK A+E+ LDLVMIS  A PPV KI+DYGKF Y+Q ++ K+ K KQK   +KE+++S  IE HD D++ KNA KF++ GN+V++ V+FRGRE  H  +GNV+LD+  N L+   ++E P + EG  + MI+ PK
Sbjct:   10 MNEEIREKEIRV------ISGDGEQLGLMSSKEALKIAEEKDLDLVMISPNAKPPVCKIMDYGKFLYEQTKKDKEAKKKQKVINIKEIRVSPTIEEHDIDIKAKNARKFLIDGNKVKITVRFRGREAEHSAVGNVILDKFFNKLEEHCIIEKPAKLEGRNMIMILAPK 171          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig883.21.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNV3_9PHAE1.630e-9670.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C915_9STRA1.030e-5356.25Translation initiation factor IF-3, C-terminal dom... [more]
A0A6V1LHA9_HETAK6.570e-4953.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TKZ8_9STRA1.020e-4853.07Translation initiation factor if-3 n=2 Tax=Monodop... [more]
A0A7S2H9R6_9STRA6.980e-4753.01Translation initiation factor IF-3 n=1 Tax=Dictyoc... [more]
A0A7S3KWM0_9STRA7.800e-4452.30Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1Z5JUP4_FISSO2.060e-4248.68Translation initiation factor IF-3 n=2 Tax=Fistuli... [more]
L8N0J6_9CYAN2.770e-4245.09Translation initiation factor IF-3 n=13 Tax=Cyanob... [more]
A0A7S2KJ44_9STRA7.970e-4251.66Translation initiation factor IF-3 n=1 Tax=Leptocy... [more]
UPI000A0242F91.520e-4148.81translation initiation factor IF-3 n=1 Tax=Clostri... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019814Translation initiation factor 3, N-terminalPFAMPF05198IF3_Ncoord: 85..159
e-value: 2.1E-22
score: 79.2
IPR036788Translation initiation factor 3 (IF-3), C-terminal domain superfamilyGENE3D3.30.110.10coord: 159..252
e-value: 1.2E-27
score: 97.8
IPR036788Translation initiation factor 3 (IF-3), C-terminal domain superfamilySUPERFAMILY55200Translation initiation factor IF3, C-terminal domaincoord: 167..252
IPR019815Translation initiation factor 3, C-terminalPFAMPF00707IF3_Ccoord: 168..251
e-value: 2.2E-26
score: 91.6
IPR001288Translation initiation factor 3TIGRFAMTIGR00168TIGR00168coord: 100..251
e-value: 2.1E-49
score: 165.3
IPR001288Translation initiation factor 3PANTHERPTHR10938TRANSLATION INITIATION FACTOR IF-3coord: 60..252
IPR001288Translation initiation factor 3HAMAPMF_00080IF_3coord: 78..253
score: 23.696476
IPR036787Translation initiation factor 3 (IF-3), N-terminal domain superfamilyGENE3D3.10.20.80coord: 76..158
e-value: 1.9E-23
score: 84.2
IPR036787Translation initiation factor 3 (IF-3), N-terminal domain superfamilySUPERFAMILY54364Translation initiation factor IF3, N-terminal domaincoord: 97..161
NoneNo IPR availablePANTHERPTHR10938:SF0TRANSLATION INITIATION FACTOR IF-3, MITOCHONDRIALcoord: 60..252

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig883contigA-nodosum_M_contig883:139157..148672 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig883.21.2mRNA_A-nodosum_M_contig883.21.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig883 138377..148717 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig883.21.2 ID=prot_A-nodosum_M_contig883.21.2|Name=mRNA_A-nodosum_M_contig883.21.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=255bp
MFVRRFGGGGGDAPGGAAAAVPNAAAQAPSSLYLGRAASLGRPSKMFRRR
THLSMEVIANNPVRNSRVYGRQSDEGKTDKSVPDMNEEILESGVESVRCV
ISIKGLDEQLGIMSTEAALKRAQEEGLDLVMISQEADPPVVKIIDYGKFK
YKQNQRKKDNKAKQKATELKEVKMSYKIETHDYDVRLKNANKFIMQGNRV
RVVVQFRGREQSHMDLGNVLLDRVSNDLKGIALMEPKRREGNRLSMIVYP
KPTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019814Translation_initiation_fac_3_N
IPR036788T_IF-3_C_sf
IPR019815Translation_initiation_fac_3_C
IPR001288Translation_initiation_fac_3
IPR036787T_IF-3_N_sf