prot_A-nodosum_M_contig88.88.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig88.88.1
Unique Nameprot_A-nodosum_M_contig88.88.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length137
Homology
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BLAST of mRNA_A-nodosum_M_contig88.88.1 vs. uniprot
Match: D7FYA3_ECTSI (TFIIIC_sub6 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA3_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.940e-35
Identity = 58/98 (59.18%), Postives = 79/98 (80.61%), Query Frame = 0 
Query:   38 EYEEEEVYVMVELPPDIDGEELLSASAVTVQGVGTSNPTLRVGGEVFAGKTEPIVGTTVVFKTPPPGAAGSRPLELACYSNMRMNFNNPGERRRKKPK 135
            EY+EE+VY++V+LPP +DGE LLSAS+V+V+G+GT  P L+VG EV+ G  EPI+GTT+ F TP PGA+G  PLELAC+SNM+M F+ P  RR+++ K
Sbjct:    6 EYDEEDVYIVVDLPPAVDGEALLSASSVSVKGIGTKTPQLKVGEEVYEGNAEPIIGTTMAFTTPKPGASGREPLELACFSNMKMAFSQPPARRQRRSK 103
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BLAST of mRNA_A-nodosum_M_contig88.88.1 vs. uniprot
Match: A0A316VSJ4_9BASI (TFIIIC_sub6 domain-containing protein n=1 Tax=Ceraceosorus guamensis TaxID=1522189 RepID=A0A316VSJ4_9BASI)

HSP 1 Score: 51.2 bits (121), Expect = 8.240e-5
Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 0 
Query:   46 VMVELPPDIDGEELLSASAVTVQGVGTSNPTLRVGGEVFAGKTEPIVGTTVVFKT--PPPGAAGS--RPLELACYSNM 119
            V++++ PD  G  L SA  V++ G+ TS P +R+GG +F GK + ++GT ++F    PP GA     RP++L+  SN+
Sbjct:   96 VVMDVGPDA-GRLLKSAREVSLTGLETSTPLVRIGGTLFVGKWDELLGTELLFSVQKPPSGAKTRTVRPIDLSASSNL 172
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig88.88.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYA3_ECTSI2.940e-3559.18TFIIIC_sub6 domain-containing protein n=1 Tax=Ecto... [more]
A0A316VSJ4_9BASI8.240e-538.46TFIIIC_sub6 domain-containing protein n=1 Tax=Cera... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.40.4370coord: 31..126
e-value: 4.6E-11
score: 44.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
IPR019481Transcription factor TFIIIC, triple barrel domainPFAMPF10419TFIIIC_sub6coord: 40..124
e-value: 1.5E-9
score: 37.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig88contigA-nodosum_M_contig88:812977..868823 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig88.88.1mRNA_A-nodosum_M_contig88.88.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig88 812345..869013 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig88.88.1 ID=prot_A-nodosum_M_contig88.88.1|Name=mRNA_A-nodosum_M_contig88.88.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=137bp
MMADGAGEANGAAQRTGGQLDDGEVGEKVCQDSVEGGEYEEEEVYVMVEL
PPDIDGEELLSASAVTVQGVGTSNPTLRVGGEVFAGKTEPIVGTTVVFKT
PPPGAAGSRPLELACYSNMRMNFNNPGERRRKKPKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019481TFIIIC_triple_barrel